Protein

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Genbank accession
AZF94519.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAFDGSIKSLLQGVSQQVPRERLDGQVSVQLNRLSDVVNGNRRRPGARYLADVPTTSQYDNRVFASYVDVQDTANHVIINTETGQLVVLSEDFTTTLHSSTQAYLVASAASAVQTASLRGYLYIANTEKAPAKVYGSTTQQDPAKTGLYFVRTPAFQKDYDITIGNSTGTYLYQYTTPEASATDAVAHSKPSYIIGQLVALINAATGTHGVTATQYDAYMFLKSNTASLSVTTNAGSTYATASNQSRVNLVSDLPARLPAVGNGALIAVGTTERNFVWYQYDYTTSVWKEAGVYGSPTGFSNMPIRISLDGAYTVETPAYEGRLSGSDATNEDPGFIDNGVTGFGAYQGRLVILAGPEVCMSAAGNPLRWYRSTVTALLTEDPINIFSGAATSTNFRHCVQFNKDLLLFARSCQAVVPSSNVAITPQTAQIVITSGYTTDTLAQPGVVGRSVLYSMPRTEHFAGVLEIIPSNTTDSQYTSNDITAHIPRYLPGRIRSIVSSTTSNSSAFICTGDNHSLFIQDYLWSGDEKVQSAWHQWTLPYPIVCTWFVRDRVYIGMRDGTAILVVTIEPQAGTTIDSYVRPFSDVYLRVTITDRQFVLPTRLRDAVAAGENLFITFADTSMGGMWVGYESINPLTFVVTTVRGVPDGEYFVGLRYTSVLSPTPPLVRDSNGVVIGTSRTLLTRYELTLKDSGAFNAVITDSSRTLTDGTYSSLVYSSTELLPNNPTAASLGRTIIPVRAQAQDTVATFEVDADTDLCILDVEYVLQYRARRSRI
Physico‐chemical
properties
protein length:776 AA
molecular weight: 84359,46500 Da
isoelectric point:5,42553
aromaticity:0,09665
hydropathy:-0,08054

Domains

Domains [InterPro]
DC_0058
STR
1–776
DC_0058
IPR058003
TTP
4–776
IPR058003
AZF94519.1
1 776
Architecture
STR
STR 1-776
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AZF94519.1
1 776
Domain Start End Length (AA) Confidence
N-terminal 1 138 138 0,9731
Central domain 139 339 202 0,1561
C-terminal 340 776 436 0,1593
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-138
Central
139-339
C-terminal
340-776

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage Ekidair
[NCBI] 		2489626 Uroviricota > Caudoviricetes > Autographivirales > Corkvirinae > Phimunavirus
Host Pectobacterium atrosepticum
[NCBI] 		29471 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZF94519.1 [NCBI]
Genbank nucleotide accession
MK095201 [NCBI]
CDS location
range 31945 -> 34275
strand -
CDS
ATGGCCTTCGATGGCAGTATAAAGAGTCTGCTTCAAGGTGTCTCTCAACAGGTACCCCGCGAGCGCCTAGATGGACAAGTATCTGTACAGTTGAACCGTTTATCCGATGTGGTGAACGGTAACCGTAGACGCCCCGGCGCTCGGTACTTAGCAGATGTACCAACCACCTCACAATACGATAACCGTGTATTCGCGTCGTACGTAGATGTACAGGACACAGCGAACCACGTTATTATTAACACAGAGACAGGGCAGTTAGTTGTTCTATCCGAAGATTTCACTACCACCTTACACAGTAGCACACAGGCGTATCTAGTAGCCTCTGCTGCCTCTGCTGTACAGACAGCCTCACTAAGGGGTTACCTGTACATTGCAAACACTGAGAAGGCTCCTGCGAAGGTTTACGGGAGTACTACACAACAAGACCCAGCTAAGACTGGCTTGTACTTCGTGCGTACACCTGCGTTCCAGAAAGATTATGATATTACTATCGGTAATAGCACAGGAACGTACTTGTACCAGTACACCACCCCGGAGGCATCCGCCACAGACGCTGTAGCGCATTCTAAGCCGAGTTATATCATTGGGCAGCTTGTTGCATTAATTAATGCTGCGACTGGCACACACGGCGTTACAGCCACACAGTACGATGCTTACATGTTCCTTAAGAGTAACACGGCCTCTTTGTCTGTGACTACTAATGCCGGTAGCACCTATGCTACAGCTAGTAACCAGTCCCGAGTTAATCTTGTGTCTGACTTACCCGCACGACTACCAGCAGTTGGTAATGGTGCATTGATAGCAGTGGGTACCACGGAACGCAACTTCGTATGGTACCAGTATGACTACACTACATCAGTGTGGAAAGAGGCAGGTGTGTACGGTAGTCCCACAGGCTTCTCTAATATGCCTATACGTATCTCGCTGGATGGTGCATACACAGTAGAGACCCCCGCGTATGAGGGACGTTTATCAGGCTCAGACGCGACTAATGAAGACCCCGGCTTTATTGATAACGGGGTAACTGGATTTGGTGCATACCAAGGCCGCTTAGTAATTCTAGCGGGGCCGGAAGTATGCATGAGTGCAGCAGGTAACCCGTTACGTTGGTACCGCAGTACAGTAACCGCGTTGCTGACTGAGGACCCTATCAATATCTTCTCAGGCGCTGCTACCAGTACTAACTTCCGACACTGTGTACAGTTCAACAAGGACTTGCTACTATTTGCTCGTTCATGTCAGGCTGTAGTGCCTAGTAGCAACGTGGCTATCACTCCGCAAACTGCTCAGATAGTAATCACGTCGGGTTACACTACCGACACTCTGGCACAGCCGGGTGTGGTGGGGCGTTCTGTACTGTACAGCATGCCGCGTACCGAACACTTTGCAGGTGTCTTGGAGATTATCCCAAGCAACACTACAGACTCCCAGTACACCTCGAATGATATTACCGCCCATATCCCAAGGTACTTGCCGGGACGTATCCGCAGTATTGTGTCTAGTACTACTAGCAACTCCAGCGCATTCATTTGTACAGGGGATAATCATAGCCTGTTCATTCAGGATTACCTATGGTCTGGGGATGAGAAGGTACAGAGTGCGTGGCATCAGTGGACGCTTCCATACCCTATCGTGTGTACATGGTTCGTTCGTGACCGCGTGTACATTGGTATGCGGGATGGTACTGCTATCCTCGTGGTGACTATTGAGCCGCAGGCGGGTACCACGATAGACAGTTACGTACGGCCGTTCTCTGATGTGTACCTACGCGTCACCATCACAGACAGGCAGTTTGTCCTCCCTACGCGTTTGCGAGATGCAGTGGCTGCCGGAGAGAACCTGTTCATTACCTTTGCTGATACCAGTATGGGTGGTATGTGGGTGGGGTATGAAAGTATCAACCCCCTTACGTTTGTGGTAACTACCGTGCGTGGGGTTCCAGATGGTGAGTACTTCGTGGGCTTACGATACACGAGTGTGCTTAGTCCTACACCGCCACTGGTCCGTGACTCTAACGGCGTCGTTATAGGTACGAGCAGAACACTACTAACGCGATACGAGCTAACCCTGAAGGACTCCGGGGCATTCAATGCCGTAATAACGGATAGCTCGCGTACGCTGACGGATGGGACATACTCCAGTCTTGTGTATAGCAGTACTGAGCTATTACCTAACAACCCAACAGCTGCATCATTGGGTAGGACTATTATCCCTGTACGCGCACAGGCGCAAGACACAGTAGCTACCTTTGAGGTGGATGCTGATACCGACCTGTGTATTCTTGATGTTGAGTACGTCCTACAGTACCGAGCACGGAGGAGTAGAATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0e0ae4ac1a68a0f59a8a37a5a9b1af7b286273b2a6a8827224f0077b25ca5e85
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2936
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel 6-phage cocktail reduces Pectobacterium atrosepticum soft rot infection in potato tubers under simulated storage conditions Carstens,A.B. 2019-05-01 — GenBank