Protein

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Genbank accession
UKH48608.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAVAIIGPKFYAWDRNGKPLAFGKVYTYQARTNNPKATYQSEDGIVENTNPVILNGEGYANIYLDGSYKVVVKDSDDNEIWTADPVTSAQAEEWVNCLAAEYVSTTVFRVNGSFTDKYEAGRRVRIDNNTAEYAYSTIIDSSFAAGQTSVTISDAVITTGIQGVCVSIVGNESTGNVSVENVTQLIASQFNPGQAVKVKGYYVAGDVGDLNYLIYSLQGYRDYLGDQAWNPDDAGDHLLSNGNVAILQRDSDHVSLLKLGFTNDAITDELWDKAKAYADYYKIAWGLSDIECTISSTRELPQYGLVGAGQITGDIVKVTRNREKFHQRGGRFVCSTFWVSGAQYIKTEWIWAQTKFLFDGNAPDYGVFWCSFGKHQGDHEVDLNKGQSLNECNFQFIRGGFHVYGSKDNYVGPGTPFDEFNLNAIEMIDTTGADITAEDGTTGWHVLNESRSNQHNTIRQWYAEGSANRSIRGRWHVLMAYVDSPANSPYALPATSHVLFNPDNSVRNQSDYFAAAPENLAKGGCWNILNASSKGEPLCMFSSGGATGNVVADATEPTGIGYKYGGASSLDFSSYRIKLSKPKTGRYTIFFWMHHVNGSQSIQVENDGSAQAHALSVYHDQGDGWRLYRISSAARSDGIDDELTIFHRSPDSEFYLGAVWATPTKTALLPWVYPEEMIEAVSTDGIVATIPEALPVGGIIKNLAVSGNPGSSSWRKQSSTEIVETPSEVPKLKSRFYPEVTAPANVATPIARISVSGFNSQGSGEIEVFIRNTQSSPDFIGGSGYFRAALALLKDGDGGVLNENIQTFGAAWIQKNGGTTPPTFQLTQVDGNTWDVEVVTPAGVGDSIVSSKVRLFDLGGDFTFDDLP
Physico‐chemical
properties
protein length:868 AA
molecular weight: 94619,58700 Da
isoelectric point:4,86658
aromaticity:0,11175
hydropathy:-0,30530

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UKH48608.1
1 868
Domain Start End Length (AA) Confidence
N-terminal 1 96 96 0,9872
Central domain 97 521 426 0,6884
C-terminal 522 868 346 0,9200
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-96
Central
97-521
C-terminal
522-868

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_ValP_FGH
[NCBI] 		2911663 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UKH48608.1 [NCBI]
Genbank nucleotide accession
OL762410.1 [NCBI]
CDS location
range 29368 -> 31974
strand +
CDS
ATGGCAGTCGCAATTATCGGCCCTAAGTTTTACGCTTGGGACAGAAACGGCAAACCGCTGGCCTTTGGTAAAGTTTACACCTATCAGGCTCGCACCAATAACCCAAAGGCAACGTACCAGTCTGAAGACGGTATTGTTGAAAATACCAACCCGGTCATTCTTAACGGTGAAGGCTACGCCAACATTTACCTTGATGGCTCTTACAAGGTTGTGGTCAAAGACTCTGATGATAACGAGATCTGGACTGCTGACCCTGTTACAAGTGCTCAAGCTGAAGAGTGGGTGAATTGCTTGGCTGCTGAATACGTCAGCACCACAGTATTCCGTGTTAATGGTAGTTTCACCGACAAGTATGAGGCTGGTCGCCGTGTTCGTATTGACAACAACACCGCCGAGTATGCTTATTCAACCATCATCGACTCAAGCTTTGCCGCAGGGCAGACAAGTGTAACCATTTCTGATGCCGTTATCACAACTGGCATTCAGGGGGTTTGCGTGTCGATCGTCGGCAACGAATCAACTGGCAATGTTTCTGTTGAAAACGTAACTCAGCTTATTGCCTCTCAGTTCAATCCGGGCCAAGCCGTGAAGGTGAAAGGTTACTATGTTGCTGGTGATGTTGGTGATCTTAACTACTTGATTTACTCGCTTCAGGGTTATCGTGATTACCTTGGCGATCAGGCTTGGAACCCTGACGATGCTGGCGATCACTTGCTCAGCAATGGCAATGTGGCAATTCTTCAGCGAGACTCTGATCATGTTTCATTGCTGAAGCTTGGCTTTACCAATGACGCAATCACTGATGAGCTTTGGGATAAGGCAAAAGCCTATGCCGATTATTACAAGATTGCTTGGGGGCTTTCAGATATTGAATGCACCATTAGCTCAACCCGTGAGCTGCCTCAATATGGTTTGGTTGGCGCAGGTCAGATCACTGGCGATATTGTTAAAGTCACCCGCAACCGTGAGAAGTTCCACCAGCGCGGTGGTCGATTCGTGTGCTCTACCTTTTGGGTTTCAGGTGCTCAATACATCAAGACAGAATGGATTTGGGCTCAAACCAAGTTCCTGTTCGATGGTAACGCTCCTGACTATGGCGTCTTTTGGTGCTCATTTGGTAAGCACCAAGGCGATCACGAAGTCGATTTGAATAAAGGCCAGTCACTAAACGAGTGTAATTTCCAGTTTATTCGTGGCGGCTTCCATGTTTACGGAAGCAAAGACAACTATGTTGGCCCCGGCACTCCTTTCGATGAGTTCAACTTGAACGCCATTGAAATGATTGACACCACTGGCGCAGATATTACAGCAGAAGACGGCACAACTGGCTGGCATGTTCTTAACGAGTCACGAAGCAACCAGCACAACACTATTCGCCAATGGTACGCAGAAGGATCAGCTAACCGATCTATTCGTGGCCGCTGGCATGTTCTTATGGCCTATGTTGATAGCCCTGCAAACTCGCCTTACGCGCTGCCGGCAACAAGCCATGTTCTTTTCAACCCTGACAACTCAGTTCGTAACCAGTCTGATTACTTTGCGGCTGCTCCTGAGAACTTGGCTAAAGGTGGCTGTTGGAACATCTTGAACGCCAGCAGTAAAGGTGAGCCGCTTTGTATGTTTTCCTCTGGTGGCGCTACTGGCAATGTTGTTGCTGATGCCACTGAGCCTACCGGGATCGGTTACAAGTACGGCGGCGCGAGCTCGCTTGATTTCTCTTCATATCGAATTAAGTTGAGCAAGCCCAAGACCGGACGTTACACGATCTTCTTCTGGATGCACCACGTTAACGGTAGCCAGTCGATTCAGGTTGAGAATGATGGTTCTGCTCAAGCTCACGCACTGAGCGTTTATCATGATCAAGGGGACGGGTGGCGCTTGTATCGGATCAGTTCAGCCGCTCGAAGTGATGGTATTGACGATGAGTTAACTATCTTCCACCGCTCGCCTGACTCTGAGTTTTACCTTGGCGCTGTTTGGGCTACACCAACGAAGACCGCACTTCTTCCTTGGGTTTACCCTGAAGAAATGATTGAGGCCGTGTCTACTGATGGTATTGTTGCGACAATTCCAGAGGCGCTACCTGTTGGCGGTATTATCAAGAATCTTGCGGTTTCTGGTAATCCGGGATCTTCATCATGGCGCAAGCAAAGCTCAACCGAGATTGTTGAAACGCCTTCTGAGGTTCCAAAGCTGAAGTCACGCTTTTATCCAGAGGTTACGGCCCCGGCTAATGTGGCGACACCTATCGCAAGAATTTCAGTGAGTGGGTTCAACTCTCAAGGTTCTGGCGAGATTGAAGTGTTTATCCGAAATACTCAGTCTTCGCCTGATTTTATTGGTGGCTCTGGTTACTTCCGCGCTGCTCTTGCTTTGCTCAAGGATGGTGACGGCGGCGTTCTTAATGAAAACATTCAGACTTTTGGTGCTGCTTGGATTCAAAAGAATGGCGGGACTACGCCGCCAACCTTCCAGTTGACTCAGGTTGACGGCAATACTTGGGATGTTGAGGTGGTTACGCCTGCTGGCGTTGGTGATTCTATTGTTAGCTCAAAGGTTCGATTGTTCGACCTTGGCGGCGACTTCACCTTTGATGACTTGCCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4d56e606cd8c25369ea6fa4b2ae2f6530c2c0145d797b23d79dcd26c0ef618e9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3195
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete sequence of phage Podoviridae sp. vB_ValP_FGH Wang,P. and Wang,X. 2012-12-15 — GenBank