Phage RBP Database

Genbank accession

WAQ79264.1 [GenBank]

Protein name

tail spike protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,99

Protein sequence

MNEMFSQGGKGSTGILTNKQAVARHFGVKQSEVVYFSTGAVLSGYKVIYDKASQRAYSLPADIGSGVTAVSLSPAGVLVHSAGNVDLGALAVERKEYINSPGSFTTGATLTVKNQRLIHNGEYYIWNGAFPKVVPASSTPENSGGVANDAWSKLSPLVKSEEVPYVRMPNAINTNVAANMDLMGRRVIYATDFGVTVDSADNADALWELGQYLSTQVTEPVKVIFPAGTSLVGSQYLTGSTGQGGSYKPSYEQRAWTDASAKGWFSIHMTDANIELEMSNWTLKINDGMRLGAFDPVTGSIAPDVVAETPDYSYMAYQGFLIKLYKAPNVVINGGTSDGNLASAVWGGKFGNTGYQIPCYNMWINQSAGARVYRHKYLNSPVDGLYHQSTGSFSFLDIVPRTVIEDCYWDSCGRNCYSLTGGANIDIINPVITRSGNKAGGIGTHYTGPEAGIDIEAEGGNPYNIRVINPKIVNTGKCAFQTVSVPGTVNDILVVGGVLHSMHSEGAVSNAGNARNIKFVGTTIIGSIIDTGWPAAMGFECYSFIDCELQNRYANDYADEYRLNFKVKEFKGNTITFGIPPTINTNHATINIEDQDATPFGLYAERFKENRLIVYGDASKVTFANGLGGIRNFKNAELYVSADGLTGGTLKITVDTSSAAMNGLSTNTANFNFDVAMDKDVGKNVWYARKVNRVAGVMTAVTDSLQDIGSKDGRFGTMYATKGIILRDVGDSTYKRLRSNNGVLEVVADNT

Physico‐chemical properties

protein length:	751 AA
molecular weight:	80709,62170 Da
isoelectric point:	5,89030
aromaticity:	0,09854
hydropathy:	-0,17004

Domain architecture

WAQ79264.1

1 751 aa

ATT 1–154 · STR 255–525 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:3.30.2020.50
ATT

G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR011050

G3DSA:3.30.2020.50
ATT

G3DSA:3.30.2020.50

IPR040775
RBD

IPR040775

WAQ79264.1

1751 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1280
ATT

DC_1280 DC_1849

WAQ79264.1

1751 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:3.30.2020.50	ATT	G3DSA:3.30.2020.50	1	96	Merged direct domain	G3DSA:3.30.2020.50	N-terminal	Low	Positional only	289 proteins / 289 hits
G3DSA:3.30.2020.50	ATT	G3DSA:3.30.2020.50	1	100	Merged direct domain	G3DSA:3.30.2020.50	N-terminal	Low	Positional only	289 proteins / 289 hits
IPR040775	RBD	DC_0821	91	154	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	97	153	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR011050	STR	IPR011050	255	525	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

WAQ79264.1

1 751 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	198	198	0,9925
Central domain	199	680	483	0,9830
C-terminal	681	751	70	0,9222

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Escherichia phage E20 [NCBI] · taxon 3003230

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Escherichia sp. [NCBI] · taxon 1884818

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

WAQ79264.1 [NCBI]

Genbank nucleotide accession

OP745616.1 [NCBI]

CDS location

range 61169 -> 63424
strand -

CDS

ATGAACGAAATGTTTTCACAAGGTGGTAAGGGTTCAACTGGAATCTTAACCAACAAACAAGCAGTAGCCCGTCACTTTGGGGTTAAGCAATCTGAGGTTGTTTACTTCTCTACTGGTGCTGTACTAAGCGGTTATAAAGTCATCTATGACAAAGCGTCACAGCGTGCTTACTCCTTACCTGCTGATATTGGTTCAGGTGTTACTGCTGTAAGTCTTAGTCCTGCTGGGGTATTAGTTCACTCTGCTGGTAATGTTGACTTAGGTGCTCTGGCTGTAGAACGTAAGGAGTATATTAACTCTCCCGGTTCATTTACTACTGGGGCTACCCTTACCGTTAAAAACCAAAGACTGATTCATAATGGTGAGTATTATATTTGGAATGGTGCATTCCCTAAAGTTGTCCCGGCATCCTCTACACCAGAAAACTCAGGTGGTGTAGCTAATGATGCCTGGAGTAAGTTAAGCCCATTAGTTAAGTCTGAAGAAGTTCCCTATGTTCGTATGCCTAATGCAATTAATACCAACGTAGCTGCTAACATGGATTTAATGGGTAGACGTGTAATCTATGCTACGGATTTTGGTGTAACTGTTGACTCTGCTGATAACGCAGACGCTCTTTGGGAATTGGGTCAATACTTAAGCACACAGGTAACTGAACCGGTTAAGGTGATATTCCCTGCTGGCACTAGTTTAGTAGGTTCCCAGTATCTCACTGGTTCTACTGGTCAGGGTGGTTCTTATAAACCTTCCTATGAGCAGCGTGCCTGGACAGATGCTTCTGCTAAAGGCTGGTTCTCCATTCATATGACGGATGCTAATATCGAACTGGAGATGAGTAACTGGACACTTAAGATTAATGACGGTATGCGTTTAGGGGCTTTTGATCCTGTTACTGGTTCTATTGCACCGGATGTTGTAGCTGAAACCCCTGATTATAGCTATATGGCTTACCAAGGTTTTCTTATTAAACTGTACAAAGCACCTAACGTCGTAATTAATGGTGGGACCAGTGATGGTAACTTAGCCTCTGCTGTATGGGGGGGTAAGTTTGGTAACACTGGTTATCAGATTCCTTGTTATAACATGTGGATTAACCAGTCAGCAGGTGCTCGTGTTTACCGACATAAATACCTTAATTCGCCTGTAGATGGCTTATATCATCAATCTACCGGTAGCTTCAGTTTCTTGGATATTGTTCCACGCACTGTTATTGAAGACTGTTACTGGGATTCCTGTGGGCGCAACTGCTACTCCCTGACTGGTGGAGCTAACATTGATATCATTAATCCAGTAATTACCCGCTCAGGCAATAAAGCTGGTGGGATTGGTACTCATTATACCGGACCGGAAGCAGGTATTGATATTGAAGCTGAAGGGGGAAACCCTTACAACATTCGTGTTATTAACCCTAAAATTGTTAACACCGGTAAGTGTGCATTCCAGACTGTATCCGTACCGGGGACTGTTAACGATATTCTGGTTGTGGGTGGCGTGCTACATAGTATGCACTCTGAGGGTGCTGTATCCAATGCTGGTAATGCCCGTAATATTAAGTTTGTAGGCACAACCATCATAGGCAGTATTATTGATACTGGCTGGCCTGCTGCTATGGGTTTTGAGTGTTATAGCTTTATTGATTGTGAACTTCAGAACAGATATGCAAATGATTATGCTGATGAGTATCGTTTGAATTTCAAAGTTAAAGAGTTTAAAGGGAATACTATTACATTTGGTATCCCACCCACCATTAACACTAACCATGCAACAATTAATATTGAAGATCAGGACGCTACTCCTTTCGGTCTTTACGCAGAACGATTCAAAGAGAATCGGTTAATTGTTTATGGTGATGCATCTAAAGTTACCTTTGCCAATGGTCTAGGTGGCATTCGTAACTTTAAGAATGCAGAGTTGTACGTTTCTGCTGATGGACTTACTGGAGGTACTCTCAAGATTACTGTTGATACTTCTAGTGCAGCAATGAATGGTTTATCTACCAATACTGCAAACTTTAACTTCGATGTTGCTATGGATAAAGATGTTGGCAAAAATGTCTGGTATGCCCGTAAAGTTAATCGTGTTGCAGGGGTTATGACAGCAGTAACAGATTCCTTGCAGGATATTGGTTCTAAGGATGGACGTTTCGGTACTATGTATGCTACCAAAGGGATTATACTCCGAGATGTGGGGGATAGTACTTACAAACGCCTTCGTTCTAATAACGGAGTACTTGAGGTAGTTGCTGATAACACCTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)