Protein

View in Explore
Genbank accession
QPB08156.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,81
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADRFPLIVNAVSKKIEELVAGDNLELTSNGIIIGGDTGSGKYLTSDGTQVLWGSPGDVFLNQSQTLTNKTLESCALSGTLNSITNLPNSSLINSGITINGSTVALGGSITTPDNNTTYTISAQDSISASQKIIRITGSDTSTDDVVITAGTNMNIARSGDEIILSSTYIDTNTVTRLQAYSGGALQDGDITIRGAGSTIVTQDTQTKTLFITSTDDDTITRLRATAGQVYNSGDFTFLAGGATSVVQGVDGNGDPTITYSSTNTVTRLKGGGSGTFTSGDVTITGGTNVTVSQAGSTVTVASVDTNDVTKIAANSESLAFGDFRLLASGATNISTSVNNGVKEITISSVNTDTGAAATASGGVQKSGNDFRLKNNANFTGNTVLKWDSGNSQLANSIILDDGSTITIGGDLVVEGTQTTLNTTTLVVEDNIIELRKGPSITASDGGIQVNLTTDSNENVVTYRQLQWYNAGGYWRSFDGSVSNRFVTENETQVLTNKTLTSPTLTAPILGAATASSINGLQIATTASATLDIASAKTLDVNRDLVLTSDNNSASITVNFRNGGNVAYTSDTLATFASTTSTQLRGLITDTTGLDRLVFQTNPTILTGITTTSPGFTLLNSGATAITAFGAAASIDMGAAGGTFTINQNLVVNEDLTVGSGIADTITINGILNSENADILIRGSATDPMRVGRGIGEVSTNTALGVRAINSVSSGSQNTAIGFESLFTTNTGAANTAIGNRALRANGIGSNNIAIGRDALLVNLSGDKNIAIGNNAMESMSTGSANVCIGHYAGYGITGTGNVLIGPADDENSTNATYVPPNIGGSRQLVIGSGTEAWIRGDANFNLTLPNNLTVDGDATISGNLVVNGDVTSINSNVIQVDDKEIELASVVATTFSAVTVDNTSTITSITINTADAGLIPGMEVNSTTGGISVPAGTTIVSISGNTATLSAAVTGSGTAIFTSPGATDLTADQGGIRVRGTTDKRIFYDHSRTDKYWVMTENLELNFGKKLVIGNQLMLNSTTLGSTIVNSSLTSVGTLTGLDVDGAITLGGVITEKTFNNFSTTLTPSANVLTLNLSAANTILGTPATTAINEWAFTNAGLSNGQSKTVTLILSSNTAATYGDACSVDGNAVTNGVQWSGGSPPIATSNTDILTFVIVRDNAGVVQVFGQGNTDFS
Physico‐chemical
properties
protein length:1178 AA
molecular weight: 120449,34620 Da
isoelectric point:4,30887
aromaticity:0,04669
hydropathy:0,01791

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPB08156.1
1 1178
Domain Start End Length (AA) Confidence
N-terminal 1 658 658 0,5350
Central domain 659 876 219 0,7622
C-terminal 877 1178 301 0,7893
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-658
Central
659-876
C-terminal
877-1178

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-H9-1
[NCBI] 		2783674 Uroviricota > Caudoviricetes > Pantevenvirales > Scyllavirus > Scyllavirus aitchnine
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPB08156.1 [NCBI]
Genbank nucleotide accession
MW117966 [NCBI]
CDS location
range 74175 -> 77711
strand -
CDS
ATGGCAGATCGTTTCCCATTAATTGTTAATGCCGTCTCCAAGAAAATTGAAGAACTTGTAGCAGGTGACAATCTAGAGTTGACATCCAATGGTATTATCATTGGCGGAGATACTGGATCAGGAAAATATTTGACCAGTGATGGAACACAGGTATTGTGGGGATCTCCTGGAGATGTCTTTTTAAATCAAAGTCAAACCCTAACAAATAAGACTTTGGAATCTTGTGCCCTGTCTGGCACGTTGAATAGCATTACAAACCTTCCAAATTCGTCTCTTATTAATAGTGGTATTACCATAAATGGATCTACTGTTGCTCTGGGTGGAAGCATAACAACTCCAGACAATAATACAACTTATACTATTTCAGCTCAAGATAGTATTAGTGCTTCTCAAAAAATCATTCGTATTACTGGCAGCGATACTTCTACAGACGATGTTGTTATTACTGCTGGAACAAACATGAACATTGCCAGAAGTGGCGATGAAATTATTTTATCTTCGACTTATATTGATACGAATACTGTAACAAGACTCCAAGCATATAGTGGAGGTGCTTTACAAGACGGGGACATTACGATAAGAGGTGCTGGATCTACTATTGTTACACAAGATACTCAAACAAAAACTCTCTTCATTACATCTACAGATGATGATACGATTACCAGATTGAGAGCAACGGCAGGACAAGTTTATAACTCTGGTGATTTTACTTTCCTTGCGGGCGGTGCAACCAGTGTTGTGCAAGGAGTAGATGGCAATGGAGATCCAACAATTACTTACAGTTCTACTAATACTGTAACTAGATTAAAAGGTGGTGGTTCTGGAACATTTACCTCAGGTGATGTAACAATCACTGGAGGAACTAATGTAACAGTATCTCAGGCAGGATCTACTGTTACTGTTGCTTCCGTAGATACTAATGATGTAACAAAAATTGCTGCTAATTCTGAAAGTCTTGCCTTCGGTGACTTTAGATTGCTAGCATCTGGAGCTACAAATATCTCTACATCAGTCAATAATGGTGTAAAAGAAATTACTATTAGCTCTGTCAACACTGATACTGGTGCCGCAGCAACTGCTTCTGGTGGTGTTCAAAAATCTGGTAATGATTTTAGATTAAAAAACAACGCAAACTTTACTGGAAACACTGTTCTCAAATGGGATAGTGGAAACTCTCAGCTAGCAAATAGTATTATTTTAGATGATGGATCTACGATAACTATTGGTGGAGATTTGGTTGTCGAGGGAACACAGACCACTCTGAACACAACCACTCTTGTAGTGGAAGATAATATTATTGAACTTAGAAAAGGACCAAGTATCACTGCTTCCGATGGTGGTATTCAAGTCAACTTAACAACTGATTCAAATGAAAATGTTGTAACTTACAGACAACTTCAATGGTATAATGCTGGTGGATATTGGAGATCTTTTGATGGTTCTGTTTCTAATAGATTTGTAACGGAGAATGAAACTCAAGTTCTTACAAACAAAACTCTTACGTCTCCAACATTAACAGCTCCAATTCTTGGTGCTGCCACAGCATCATCTATTAATGGATTGCAAATTGCAACCACTGCTTCGGCAACTCTTGACATTGCTTCTGCCAAAACATTAGATGTCAATAGAGATCTTGTTTTAACTTCTGATAATAACTCTGCATCTATCACAGTTAACTTTAGGAATGGCGGTAACGTAGCATATACATCAGACACACTTGCTACGTTTGCATCTACAACATCCACTCAGTTGAGAGGTTTGATTACTGACACGACTGGTCTTGATCGTCTTGTATTCCAAACCAACCCAACTATACTTACTGGAATTACTACTACTTCACCTGGATTTACGCTGTTAAATTCTGGTGCCACTGCTATTACAGCATTTGGAGCAGCTGCTTCTATTGATATGGGTGCTGCTGGTGGTACGTTTACCATCAATCAGAATCTAGTTGTTAATGAAGATCTAACAGTGGGTTCTGGTATTGCTGATACTATTACTATCAACGGTATTCTTAACTCTGAGAACGCTGATATTTTAATTCGTGGTAGTGCTACCGATCCAATGAGAGTTGGACGTGGTATTGGTGAAGTTAGTACAAACACTGCCTTGGGTGTGAGAGCAATTAATTCTGTATCCTCTGGTTCTCAGAATACAGCGATTGGTTTTGAATCTTTATTTACCACAAATACTGGTGCTGCTAACACTGCAATTGGTAATAGAGCACTGAGAGCAAATGGTATTGGATCTAACAACATTGCTATTGGTCGTGATGCTCTACTGGTAAATCTTTCTGGTGATAAGAACATCGCTATTGGTAACAATGCGATGGAAAGCATGAGCACAGGTAGTGCCAACGTTTGTATTGGTCACTATGCTGGTTACGGTATCACTGGTACTGGTAACGTTCTCATCGGTCCTGCTGATGATGAGAACTCAACTAACGCAACTTATGTACCACCTAACATTGGTGGCAGCAGACAGTTAGTTATTGGTTCTGGTACTGAAGCATGGATTCGTGGTGACGCTAACTTCAATCTTACATTACCTAATAACCTGACAGTAGATGGTGATGCTACTATCTCTGGTAATTTAGTTGTTAATGGAGATGTCACATCAATTAACTCTAACGTCATTCAAGTAGATGATAAAGAGATTGAACTTGCCTCTGTTGTAGCTACAACATTCTCCGCTGTAACCGTCGATAATACTTCTACAATTACTAGTATTACTATTAATACAGCTGATGCAGGTTTGATTCCTGGAATGGAGGTCAACTCCACAACAGGTGGTATTAGTGTTCCTGCAGGAACAACTATTGTGAGTATTAGTGGAAATACTGCTACTCTCTCAGCTGCTGTTACAGGAAGTGGAACTGCAATCTTCACTTCTCCTGGTGCAACGGATCTGACAGCAGATCAAGGTGGCATTCGTGTCAGGGGAACTACAGACAAGCGAATTTTCTACGATCACTCCAGAACTGATAAGTATTGGGTGATGACTGAGAACCTTGAACTCAACTTCGGTAAGAAGCTAGTTATTGGTAACCAGTTGATGCTCAACAGCACCACCCTTGGTTCTACAATTGTCAATTCTTCACTAACATCTGTTGGTACACTGACTGGACTAGATGTTGATGGTGCTATCACTCTTGGTGGTGTGATTACTGAAAAGACATTCAATAATTTCAGTACGACTCTTACTCCATCTGCTAACGTTCTAACTCTAAACCTTTCTGCTGCCAACACAATTCTTGGAACACCAGCAACAACAGCAATCAATGAGTGGGCATTTACTAATGCTGGTCTAAGCAATGGTCAGTCCAAGACAGTAACTCTCATTCTATCTTCTAACACTGCTGCTACATATGGTGACGCTTGTAGTGTTGATGGCAACGCAGTTACTAATGGTGTTCAGTGGTCTGGAGGTTCGCCACCAATTGCCACATCAAACACAGACATTCTCACGTTTGTTATCGTCCGAGATAATGCGGGTGTCGTTCAGGTATTCGGACAAGGCAACACAGACTTCAGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
16db87b44a4a21e1c307e1bd273685169a9780329652a8f6ea1d6afed454eeb8
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2747
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-H9-1 from the Yellow Sea, China Jiang,T. 2019-04-04 — GenBank