Protein

View in Explore
Genbank accession
QPB08156.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,81
TF
Evidence RBPdetect2
Probability 0,71
Seq2Symm
C3 confidence 0,992 truncated
C3 0,992
C1 0,064
D3 0,003
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MADRFPLIVNAVSKKIEELVAGDNLELTSNGIIIGGDTGSGKYLTSDGTQVLWGSPGDVFLNQSQTLTNKTLESCALSGTLNSITNLPNSSLINSGITINGSTVALGGSITTPDNNTTYTISAQDSISASQKIIRITGSDTSTDDVVITAGTNMNIARSGDEIILSSTYIDTNTVTRLQAYSGGALQDGDITIRGAGSTIVTQDTQTKTLFITSTDDDTITRLRATAGQVYNSGDFTFLAGGATSVVQGVDGNGDPTITYSSTNTVTRLKGGGSGTFTSGDVTITGGTNVTVSQAGSTVTVASVDTNDVTKIAANSESLAFGDFRLLASGATNISTSVNNGVKEITISSVNTDTGAAATASGGVQKSGNDFRLKNNANFTGNTVLKWDSGNSQLANSIILDDGSTITIGGDLVVEGTQTTLNTTTLVVEDNIIELRKGPSITASDGGIQVNLTTDSNENVVTYRQLQWYNAGGYWRSFDGSVSNRFVTENETQVLTNKTLTSPTLTAPILGAATASSINGLQIATTASATLDIASAKTLDVNRDLVLTSDNNSASITVNFRNGGNVAYTSDTLATFASTTSTQLRGLITDTTGLDRLVFQTNPTILTGITTTSPGFTLLNSGATAITAFGAAASIDMGAAGGTFTINQNLVVNEDLTVGSGIADTITINGILNSENADILIRGSATDPMRVGRGIGEVSTNTALGVRAINSVSSGSQNTAIGFESLFTTNTGAANTAIGNRALRANGIGSNNIAIGRDALLVNLSGDKNIAIGNNAMESMSTGSANVCIGHYAGYGITGTGNVLIGPADDENSTNATYVPPNIGGSRQLVIGSGTEAWIRGDANFNLTLPNNLTVDGDATISGNLVVNGDVTSINSNVIQVDDKEIELASVVATTFSAVTVDNTSTITSITINTADAGLIPGMEVNSTTGGISVPAGTTIVSISGNTATLSAAVTGSGTAIFTSPGATDLTADQGGIRVRGTTDKRIFYDHSRTDKYWVMTENLELNFGKKLVIGNQLMLNSTTLGSTIVNSSLTSVGTLTGLDVDGAITLGGVITEKTFNNFSTTLTPSANVLTLNLSAANTILGTPATTAINEWAFTNAGLSNGQSKTVTLILSSNTAATYGDACSVDGNAVTNGVQWSGGSPPIATSNTDILTFVIVRDNAGVVQVFGQGNTDFS
Physico‐chemical
properties
protein length:1178 AA
molecular weight: 120449,34620 Da
isoelectric point:4,30887
aromaticity:0,04669
hydropathy:0,01791

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
QPB08156.1
1 1178 aa
Domain Start End Length (AA) Confidence
N-terminal 1 658 658 0,5350
Central domain 659 876 219 0,7622
C-terminal 877 1178 301 0,7893
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Synechococcus phage S-H9-1 [NCBI] · taxon 2783674
Uroviricota Caudoviricetes Pantevenvirales Scyllavirus Scyllavirus aitchnine
Host
Synechococcus sp. MW02 [NCBI] · taxon 1620844
Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus

Coding sequence (CDS)

Genbank protein accession
QPB08156.1 [NCBI]
Genbank nucleotide accession
MW117966 [NCBI]
CDS location
range 74175 -> 77711
strand -
CDS
ATGGCAGATCGTTTCCCATTAATTGTTAATGCCGTCTCCAAGAAAATTGAAGAACTTGTAGCAGGTGACAATCTAGAGTTGACATCCAATGGTATTATCATTGGCGGAGATACTGGATCAGGAAAATATTTGACCAGTGATGGAACACAGGTATTGTGGGGATCTCCTGGAGATGTCTTTTTAAATCAAAGTCAAACCCTAACAAATAAGACTTTGGAATCTTGTGCCCTGTCTGGCACGTTGAATAGCATTACAAACCTTCCAAATTCGTCTCTTATTAATAGTGGTATTACCATAAATGGATCTACTGTTGCTCTGGGTGGAAGCATAACAACTCCAGACAATAATACAACTTATACTATTTCAGCTCAAGATAGTATTAGTGCTTCTCAAAAAATCATTCGTATTACTGGCAGCGATACTTCTACAGACGATGTTGTTATTACTGCTGGAACAAACATGAACATTGCCAGAAGTGGCGATGAAATTATTTTATCTTCGACTTATATTGATACGAATACTGTAACAAGACTCCAAGCATATAGTGGAGGTGCTTTACAAGACGGGGACATTACGATAAGAGGTGCTGGATCTACTATTGTTACACAAGATACTCAAACAAAAACTCTCTTCATTACATCTACAGATGATGATACGATTACCAGATTGAGAGCAACGGCAGGACAAGTTTATAACTCTGGTGATTTTACTTTCCTTGCGGGCGGTGCAACCAGTGTTGTGCAAGGAGTAGATGGCAATGGAGATCCAACAATTACTTACAGTTCTACTAATACTGTAACTAGATTAAAAGGTGGTGGTTCTGGAACATTTACCTCAGGTGATGTAACAATCACTGGAGGAACTAATGTAACAGTATCTCAGGCAGGATCTACTGTTACTGTTGCTTCCGTAGATACTAATGATGTAACAAAAATTGCTGCTAATTCTGAAAGTCTTGCCTTCGGTGACTTTAGATTGCTAGCATCTGGAGCTACAAATATCTCTACATCAGTCAATAATGGTGTAAAAGAAATTACTATTAGCTCTGTCAACACTGATACTGGTGCCGCAGCAACTGCTTCTGGTGGTGTTCAAAAATCTGGTAATGATTTTAGATTAAAAAACAACGCAAACTTTACTGGAAACACTGTTCTCAAATGGGATAGTGGAAACTCTCAGCTAGCAAATAGTATTATTTTAGATGATGGATCTACGATAACTATTGGTGGAGATTTGGTTGTCGAGGGAACACAGACCACTCTGAACACAACCACTCTTGTAGTGGAAGATAATATTATTGAACTTAGAAAAGGACCAAGTATCACTGCTTCCGATGGTGGTATTCAAGTCAACTTAACAACTGATTCAAATGAAAATGTTGTAACTTACAGACAACTTCAATGGTATAATGCTGGTGGATATTGGAGATCTTTTGATGGTTCTGTTTCTAATAGATTTGTAACGGAGAATGAAACTCAAGTTCTTACAAACAAAACTCTTACGTCTCCAACATTAACAGCTCCAATTCTTGGTGCTGCCACAGCATCATCTATTAATGGATTGCAAATTGCAACCACTGCTTCGGCAACTCTTGACATTGCTTCTGCCAAAACATTAGATGTCAATAGAGATCTTGTTTTAACTTCTGATAATAACTCTGCATCTATCACAGTTAACTTTAGGAATGGCGGTAACGTAGCATATACATCAGACACACTTGCTACGTTTGCATCTACAACATCCACTCAGTTGAGAGGTTTGATTACTGACACGACTGGTCTTGATCGTCTTGTATTCCAAACCAACCCAACTATACTTACTGGAATTACTACTACTTCACCTGGATTTACGCTGTTAAATTCTGGTGCCACTGCTATTACAGCATTTGGAGCAGCTGCTTCTATTGATATGGGTGCTGCTGGTGGTACGTTTACCATCAATCAGAATCTAGTTGTTAATGAAGATCTAACAGTGGGTTCTGGTATTGCTGATACTATTACTATCAACGGTATTCTTAACTCTGAGAACGCTGATATTTTAATTCGTGGTAGTGCTACCGATCCAATGAGAGTTGGACGTGGTATTGGTGAAGTTAGTACAAACACTGCCTTGGGTGTGAGAGCAATTAATTCTGTATCCTCTGGTTCTCAGAATACAGCGATTGGTTTTGAATCTTTATTTACCACAAATACTGGTGCTGCTAACACTGCAATTGGTAATAGAGCACTGAGAGCAAATGGTATTGGATCTAACAACATTGCTATTGGTCGTGATGCTCTACTGGTAAATCTTTCTGGTGATAAGAACATCGCTATTGGTAACAATGCGATGGAAAGCATGAGCACAGGTAGTGCCAACGTTTGTATTGGTCACTATGCTGGTTACGGTATCACTGGTACTGGTAACGTTCTCATCGGTCCTGCTGATGATGAGAACTCAACTAACGCAACTTATGTACCACCTAACATTGGTGGCAGCAGACAGTTAGTTATTGGTTCTGGTACTGAAGCATGGATTCGTGGTGACGCTAACTTCAATCTTACATTACCTAATAACCTGACAGTAGATGGTGATGCTACTATCTCTGGTAATTTAGTTGTTAATGGAGATGTCACATCAATTAACTCTAACGTCATTCAAGTAGATGATAAAGAGATTGAACTTGCCTCTGTTGTAGCTACAACATTCTCCGCTGTAACCGTCGATAATACTTCTACAATTACTAGTATTACTATTAATACAGCTGATGCAGGTTTGATTCCTGGAATGGAGGTCAACTCCACAACAGGTGGTATTAGTGTTCCTGCAGGAACAACTATTGTGAGTATTAGTGGAAATACTGCTACTCTCTCAGCTGCTGTTACAGGAAGTGGAACTGCAATCTTCACTTCTCCTGGTGCAACGGATCTGACAGCAGATCAAGGTGGCATTCGTGTCAGGGGAACTACAGACAAGCGAATTTTCTACGATCACTCCAGAACTGATAAGTATTGGGTGATGACTGAGAACCTTGAACTCAACTTCGGTAAGAAGCTAGTTATTGGTAACCAGTTGATGCTCAACAGCACCACCCTTGGTTCTACAATTGTCAATTCTTCACTAACATCTGTTGGTACACTGACTGGACTAGATGTTGATGGTGCTATCACTCTTGGTGGTGTGATTACTGAAAAGACATTCAATAATTTCAGTACGACTCTTACTCCATCTGCTAACGTTCTAACTCTAAACCTTTCTGCTGCCAACACAATTCTTGGAACACCAGCAACAACAGCAATCAATGAGTGGGCATTTACTAATGCTGGTCTAAGCAATGGTCAGTCCAAGACAGTAACTCTCATTCTATCTTCTAACACTGCTGCTACATATGGTGACGCTTGTAGTGTTGATGGCAACGCAGTTACTAATGGTGTTCAGTGGTCTGGAGGTTCGCCACCAATTGCCACATCAAACACAGACATTCTCACGTTTGTTATCGTCCGAGATAATGCGGGTGTCGTTCAGGTATTCGGACAAGGCAACACAGACTTCAGCTGA

Genome Context

Tertiary structure

QPB08156.1
ColabFold structure
Source ColabFold
pLDDT 27.4
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-H9-1 from the Yellow Sea, China Jiang,T. 2019-04-04 — GenBank