Phage RBP Database

Genbank accession

URG13985.1 [GenBank]

Protein name

tail fiber protein

RBP type

TSP

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,97

Protein sequence

MADNFSGIKISQLDDPNRINDNDIIPFTNDDMGDKQTRKIKLSALRDQLNYDNAFLTVQEGLANTIPGQIFHVYVDDTQLEVYAYLNSNGAAEIVQDAQGNPFKGQTAKALDFIRGELGLTMIGHVSSFARLREIKPPFEGAIVELLGWNEGSTYGGGRFQGNLSTGADDNGIVAAGDGFQWRRINVDEGINPEWFGYVNGSGNDVSTTLKQAIAQAVNLKRPVVFRDGAQMSLAVAGIEIPVGVDLTVANGGRAYFEITHEIETTGQFLVKSKNRISGLVFNYPKQTKDINAKPIVRYGPIFVGAGFYSSFTGINVGNAYYGFKIGGNDEGSASYITMKDINGAPIYRGISLDRVLDIPRISDIHWNYNMYLNSDQDYAPSLKQWIHENGEAFHFGRVDFAEVQRIFAFGYSKGIFLRGERYAGSADSIRFTGCDMDICVNPIYAQNFSGQLVIRNGKFTGNGNNLNGLTAPANGCFNYFQRVSPYARVILDSVTMNNYDRDAIRTGNDTVISNSKIYSYGLDKQQRAAVAIITDSNASLTVDACYFDATGQQNRGITGISTTGQLLITNGTQILNASLEGYRWLTGFALVEEGCRIDGPSRNINTFITNVRRTMYTDNLPTAGGGWIRGDKAMLTNPGIGTQATQGTYTILGWIRITASNAEGTNHVLGVDWLEIRSQIEPVPKFSSAGSVRPAVTAIGYYFFDTTLGKPIYLKSANPAVWVDGNGNPV

Physico‐chemical properties

protein length:	731 AA
molecular weight:	79911,53960 Da
isoelectric point:	5,49027
aromaticity:	0,10670
hydropathy:	-0,23694

Domain architecture

URG13985.1

1 731 aa

RBD 126–186 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR059934
RBD

IPR059934

URG13985.1

1731 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1164
ATT

DC_1164 DC_0941

URG13985.1

1731 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR059934	RBD	DC_0541	126	186	InterPro cluster	Phage tail protein-like, small four-stranded beta-sheet domain	C-terminal	Low	Positional only	683 proteins / 690 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

URG13985.1

1 731 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	205	205	0,9943
Central domain	206	611	407	0,9930
C-terminal	612	731	119	0,9875

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pectobacterium phage vB_ParM-25 [NCBI] · taxon 2939654

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host No host information

Genbank protein accession

URG13985.1 [NCBI]

Genbank nucleotide accession

ON375847.1 [NCBI]

CDS location

range 28666 -> 30861
strand +

CDS

ATGGCCGATAATTTCAGCGGTATTAAGATTAGTCAGTTAGACGATCCTAATCGTATTAACGACAACGATATCATCCCGTTCACTAACGATGACATGGGCGATAAACAAACACGTAAAATAAAGTTAAGTGCCCTACGTGATCAGCTCAATTACGATAACGCTTTCCTAACCGTGCAGGAAGGTTTAGCCAACACTATCCCAGGACAGATCTTCCACGTATACGTTGACGACACTCAGTTAGAAGTCTACGCGTACCTTAACAGTAATGGTGCAGCAGAGATCGTCCAAGATGCGCAGGGTAATCCTTTTAAAGGACAAACCGCCAAAGCGCTGGACTTCATTCGTGGTGAGTTAGGACTTACCATGATCGGTCACGTAAGTTCCTTTGCACGACTGCGCGAAATCAAACCTCCTTTCGAAGGTGCTATTGTAGAACTTCTGGGTTGGAACGAGGGCTCCACTTACGGCGGTGGTCGTTTCCAAGGCAATCTGTCTACGGGAGCTGACGACAACGGTATTGTTGCGGCAGGCGACGGTTTCCAATGGCGTCGCATTAATGTCGACGAAGGCATTAACCCAGAGTGGTTCGGTTACGTGAATGGTTCAGGTAATGACGTATCCACTACGTTGAAACAAGCCATTGCTCAGGCGGTTAACCTGAAACGTCCTGTTGTATTCCGCGATGGGGCTCAAATGAGTCTAGCGGTAGCAGGGATTGAAATTCCAGTAGGCGTTGATCTTACTGTGGCTAACGGTGGGAGAGCTTACTTTGAAATCACTCACGAAATCGAAACAACCGGACAGTTCCTTGTCAAAAGTAAAAACCGAATCTCCGGACTTGTCTTCAACTACCCGAAACAAACGAAAGACATCAATGCTAAGCCGATTGTGCGTTACGGACCTATTTTTGTCGGTGCTGGATTTTATTCTTCTTTCACGGGAATAAACGTAGGTAACGCATACTACGGATTTAAGATCGGCGGTAATGACGAAGGCTCCGCATCGTACATCACGATGAAAGACATTAACGGCGCCCCTATCTATCGTGGAATTTCACTTGACCGCGTTCTGGACATCCCTCGTATTTCTGATATCCATTGGAACTACAACATGTACCTGAACTCCGATCAGGACTACGCACCATCTCTGAAACAGTGGATCCATGAGAATGGTGAGGCGTTCCATTTTGGTCGTGTTGACTTTGCTGAGGTACAACGTATCTTTGCATTCGGGTACAGTAAAGGTATCTTCCTGAGAGGTGAGCGTTATGCGGGGAGCGCTGATTCCATTCGCTTCACGGGTTGCGATATGGACATCTGTGTTAACCCTATCTACGCTCAGAACTTTAGTGGTCAGTTAGTTATTCGTAACGGTAAGTTCACGGGTAACGGTAATAACCTGAATGGGTTGACTGCGCCGGCTAACGGTTGTTTCAACTACTTCCAACGCGTGTCTCCGTATGCACGAGTCATCTTGGATTCAGTTACCATGAACAACTACGACCGCGATGCTATTCGTACGGGTAACGACACGGTCATCAGTAACAGTAAGATCTACTCTTACGGCTTGGACAAACAGCAACGTGCAGCAGTAGCTATCATTACCGATAGCAATGCGTCGTTGACTGTAGATGCTTGTTACTTCGATGCTACTGGTCAACAGAACCGCGGCATTACAGGTATCAGTACTACCGGTCAGTTGTTAATCACTAACGGTACTCAAATCCTTAACGCTTCGTTAGAAGGGTATCGTTGGTTAACCGGTTTTGCGCTAGTTGAAGAAGGTTGTCGTATCGATGGTCCATCTCGTAACATCAACACGTTCATCACCAATGTCCGTCGCACTATGTACACGGATAATCTCCCTACCGCAGGCGGTGGATGGATTCGCGGCGATAAAGCGATGTTGACTAACCCCGGTATCGGTACCCAGGCAACCCAGGGCACCTACACTATCCTGGGCTGGATACGCATCACTGCCTCTAATGCCGAAGGTACCAACCACGTATTAGGTGTTGACTGGTTAGAGATCAGATCTCAAATTGAACCTGTCCCTAAGTTCAGTTCAGCAGGTAGCGTACGACCAGCGGTAACTGCCATTGGCTATTACTTCTTCGACACCACATTAGGTAAACCAATTTATCTCAAATCTGCTAACCCAGCTGTTTGGGTTGATGGCAACGGTAACCCTGTTTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)