Phage RBP Database

Genbank accession

URG13985.1 [GenBank]

Protein name

tail fiber protein

RBP type

TSP

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,97

Seq2Symm

C3 confidence 1,000

C3	1,000
D3	0,020
C1	0,008

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MADNFSGIKISQLDDPNRINDNDIIPFTNDDMGDKQTRKIKLSALRDQLNYDNAFLTVQEGLANTIPGQIFHVYVDDTQLEVYAYLNSNGAAEIVQDAQGNPFKGQTAKALDFIRGELGLTMIGHVSSFARLREIKPPFEGAIVELLGWNEGSTYGGGRFQGNLSTGADDNGIVAAGDGFQWRRINVDEGINPEWFGYVNGSGNDVSTTLKQAIAQAVNLKRPVVFRDGAQMSLAVAGIEIPVGVDLTVANGGRAYFEITHEIETTGQFLVKSKNRISGLVFNYPKQTKDINAKPIVRYGPIFVGAGFYSSFTGINVGNAYYGFKIGGNDEGSASYITMKDINGAPIYRGISLDRVLDIPRISDIHWNYNMYLNSDQDYAPSLKQWIHENGEAFHFGRVDFAEVQRIFAFGYSKGIFLRGERYAGSADSIRFTGCDMDICVNPIYAQNFSGQLVIRNGKFTGNGNNLNGLTAPANGCFNYFQRVSPYARVILDSVTMNNYDRDAIRTGNDTVISNSKIYSYGLDKQQRAAVAIITDSNASLTVDACYFDATGQQNRGITGISTTGQLLITNGTQILNASLEGYRWLTGFALVEEGCRIDGPSRNINTFITNVRRTMYTDNLPTAGGGWIRGDKAMLTNPGIGTQATQGTYTILGWIRITASNAEGTNHVLGVDWLEIRSQIEPVPKFSSAGSVRPAVTAIGYYFFDTTLGKPIYLKSANPAVWVDGNGNPV

Physico‐chemical properties

protein length:	731 AA
molecular weight:	79911,53960 Da
isoelectric point:	5,49027
aromaticity:	0,10670
hydropathy:	-0,23694

Domain architecture

URG13985.1

1 731 aa

RBD 126–186 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR059934
RBD

IPR059934

URG13985.1

1731 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1164
ATT

DC_1164 DC_0941

URG13985.1

1731 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR059934	RBD	DC_0541	126	186	InterPro cluster	Phage tail protein-like, small four-stranded beta-sheet domain	C-terminal	Low	Positional only	683 proteins / 690 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

URG13985.1

1 731 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	205	205	0,9943
Central domain	206	611	407	0,9930
C-terminal	612	731	119	0,9875

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pectobacterium phage vB_ParM-25 [NCBI] · taxon 2939654

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host No host information

Genbank protein accession

URG13985.1 [NCBI]

Genbank nucleotide accession

ON375847.1 [NCBI]

CDS location

range 28666 -> 30861
strand +

CDS

ATGGCCGATAATTTCAGCGGTATTAAGATTAGTCAGTTAGACGATCCTAATCGTATTAACGACAACGATATCATCCCGTTCACTAACGATGACATGGGCGATAAACAAACACGTAAAATAAAGTTAAGTGCCCTACGTGATCAGCTCAATTACGATAACGCTTTCCTAACCGTGCAGGAAGGTTTAGCCAACACTATCCCAGGACAGATCTTCCACGTATACGTTGACGACACTCAGTTAGAAGTCTACGCGTACCTTAACAGTAATGGTGCAGCAGAGATCGTCCAAGATGCGCAGGGTAATCCTTTTAAAGGACAAACCGCCAAAGCGCTGGACTTCATTCGTGGTGAGTTAGGACTTACCATGATCGGTCACGTAAGTTCCTTTGCACGACTGCGCGAAATCAAACCTCCTTTCGAAGGTGCTATTGTAGAACTTCTGGGTTGGAACGAGGGCTCCACTTACGGCGGTGGTCGTTTCCAAGGCAATCTGTCTACGGGAGCTGACGACAACGGTATTGTTGCGGCAGGCGACGGTTTCCAATGGCGTCGCATTAATGTCGACGAAGGCATTAACCCAGAGTGGTTCGGTTACGTGAATGGTTCAGGTAATGACGTATCCACTACGTTGAAACAAGCCATTGCTCAGGCGGTTAACCTGAAACGTCCTGTTGTATTCCGCGATGGGGCTCAAATGAGTCTAGCGGTAGCAGGGATTGAAATTCCAGTAGGCGTTGATCTTACTGTGGCTAACGGTGGGAGAGCTTACTTTGAAATCACTCACGAAATCGAAACAACCGGACAGTTCCTTGTCAAAAGTAAAAACCGAATCTCCGGACTTGTCTTCAACTACCCGAAACAAACGAAAGACATCAATGCTAAGCCGATTGTGCGTTACGGACCTATTTTTGTCGGTGCTGGATTTTATTCTTCTTTCACGGGAATAAACGTAGGTAACGCATACTACGGATTTAAGATCGGCGGTAATGACGAAGGCTCCGCATCGTACATCACGATGAAAGACATTAACGGCGCCCCTATCTATCGTGGAATTTCACTTGACCGCGTTCTGGACATCCCTCGTATTTCTGATATCCATTGGAACTACAACATGTACCTGAACTCCGATCAGGACTACGCACCATCTCTGAAACAGTGGATCCATGAGAATGGTGAGGCGTTCCATTTTGGTCGTGTTGACTTTGCTGAGGTACAACGTATCTTTGCATTCGGGTACAGTAAAGGTATCTTCCTGAGAGGTGAGCGTTATGCGGGGAGCGCTGATTCCATTCGCTTCACGGGTTGCGATATGGACATCTGTGTTAACCCTATCTACGCTCAGAACTTTAGTGGTCAGTTAGTTATTCGTAACGGTAAGTTCACGGGTAACGGTAATAACCTGAATGGGTTGACTGCGCCGGCTAACGGTTGTTTCAACTACTTCCAACGCGTGTCTCCGTATGCACGAGTCATCTTGGATTCAGTTACCATGAACAACTACGACCGCGATGCTATTCGTACGGGTAACGACACGGTCATCAGTAACAGTAAGATCTACTCTTACGGCTTGGACAAACAGCAACGTGCAGCAGTAGCTATCATTACCGATAGCAATGCGTCGTTGACTGTAGATGCTTGTTACTTCGATGCTACTGGTCAACAGAACCGCGGCATTACAGGTATCAGTACTACCGGTCAGTTGTTAATCACTAACGGTACTCAAATCCTTAACGCTTCGTTAGAAGGGTATCGTTGGTTAACCGGTTTTGCGCTAGTTGAAGAAGGTTGTCGTATCGATGGTCCATCTCGTAACATCAACACGTTCATCACCAATGTCCGTCGCACTATGTACACGGATAATCTCCCTACCGCAGGCGGTGGATGGATTCGCGGCGATAAAGCGATGTTGACTAACCCCGGTATCGGTACCCAGGCAACCCAGGGCACCTACACTATCCTGGGCTGGATACGCATCACTGCCTCTAATGCCGAAGGTACCAACCACGTATTAGGTGTTGACTGGTTAGAGATCAGATCTCAAATTGAACCTGTCCCTAAGTTCAGTTCAGCAGGTAGCGTACGACCAGCGGTAACTGCCATTGGCTATTACTTCTTCGACACCACATTAGGTAAACCAATTTATCTCAAATCTGCTAACCCAGCTGTTTGGGTTGATGGCAACGGTAACCCTGTTTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)