Protein

View in Explore

Genbank accession

YP_009859395.1 [GenBank]

Protein name

virion structural protein

RBP type

Evidence RBPdetect

Probability 0,68

Protein sequence

MASRKEMMGMDTETLRMLGLEAGLSFEPGLSKSKMVIQLETHQASGWLDVNSQLLHADAEGGFDHMQGFTGHEEQSISDAARVAQSLAGAGYTETFHSIMGGGRDHHVDALHQYMQKLGVSADDVWMHMPKANPNIPPQNFNMLKGYLNNHWDDYQDIMPPLEGHYAGDIMGEYATNKGSVADSYNHLASMYLNKAAYNNPHAYEKDASIVATRLASAMGNQFLEVGYAAATGAKVGYHSILPQLGSDVVRGTQYPREPLNAAGLPLGATGSAVQGNRAHYSLVASLLGRPEGADEASSAIRQEVSSTMKSLASSHKGGGETGMNPYRHETSEHDLLLDSATRYVGIEEARSGYANLDDTSYNRNNIQAVIENSWDKMDAQAASAPSGVPNPDLRLPRRAEIGTQWSADLNEPMSWNAARSRREGAAIADLDAAHANFRDVADGNRGASPIKYHNMEQGSDEWFKFREQYDITGSTVGGFLGSNSYTRPWAQFMDKLGVTRNETAPNSFQEKMFAMGHKREDEARIRVSKELGQDIQQVGAITNDMFPGMMYSPDGLIGDDTLWEHKAPERAGKFADLNAGDHPDYMDQVQLGMLLSGRKKTLFSQTIGQQTQNQWIEQDPDWYNRNQTRLDSVLNRMQAGRDFLSNHADLPQDELKAGVRKAVTGEGIWKDVRQKSDRGYSPNAGTEADPFLIGGRRSYNDAAQGGSDYEPNFVTSANTGLVPVGGNGAETGMALAVKQGVLAAREEVKRGEASGNAAGFDAGGADADFDDLGMPRGFSRRAFDRANSDGAGGGGGNGGGRNGAGPGAFDNFGNGIASGLASGSLHGLQGGFQRELANMGPVGQTLLAGIGAASIGGEVISTMNDYLGNSQDFGSTNPIQFDAQQQGLEMLGLNKGQAQRANETVHSIYNRMANGDPSGAAQISVATRGLLTLADVRESGGDPIKLAAMFKSKAQARGWSPERIAGAAEMSGLGGFARAANTSDEIQAAAEGLDDTRGRQDTSDFASSVRRDNAVRAAVSPDYFIQRYGAQDYNALVGGLSGGMAKAYGAMDKAEQLTHANSLAEATQMLESNGRDYDDKGNPLTSPTGAKYSMQVLPSTARDPGYGVKPAQSDTPEEYNRVGRELLDKMVGKYAGDYDKAAAAYTDGSGTVDRAVKQWGNDWLKHMPAQAQKRVADLHKLAAGANGFAGGSTGPSVGTIQVNVNATVNGKQATATATVGGQSQTHTINVGGAVSQKR

Physico‐chemical properties

protein length:	1239 AA
molecular weight:	132124,17690 Da
isoelectric point:	5,38631
aromaticity:	0,07103
hydropathy:	-0,57595

Domains

Domains [InterPro]

DC_0169
ATT
1–417

DC_0169 IPR011604 DC_0159 IPR023346 DC_0800

IPR011335
Unmapped
452–638

IPR011335 G3DSA:1.10.530.10

cd00254
ENZ
1082–1159

cd00254

IPR008258
ENZ
1086–1160

IPR008258

YP_009859395.1

1 1239

Architecture

ATT

STR

RBD

ATT 1-417 | STR 443-1164 | RBD 1165-1239

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0169	ATT	DC_0169	1	417	Novel HMM	DC_0169	N-terminal	Low	Positional only	46 proteins / 46 hits
IPR011604	STR	IPR011604	443	646	Merged direct domain	PD-(D/E)XK endonuclease-like domain superfamily	Central	Low	Positional only	46 proteins / 46 hits
IPR011335	Unmapped	-	452	638	InterPro	Restriction endonuclease type II-like	-	-	-	-
DC_0159	STR	DC_0159	646	1059	Novel HMM	DC_0159	Central	Low	Positional only	48 proteins / 48 hits
G3DSA:1.10.530.10	RBD	G3DSA:1.10.530.10	1051	1182	Merged direct domain	G3DSA:1.10.530.10	C-terminal	Low	Positional only	95 proteins / 95 hits
IPR023346	STR	IPR023346	1064	1164	Merged direct domain	Lysozyme-like domain superfamily	Central	Low	Positional only	29 proteins / 29 hits
cd00254	ENZ	DC_0010	1082	1159	InterPro cluster	cd00254	C-terminal	High	Text match	100 proteins / 142 hits
IPR008258	ENZ	DC_0010	1086	1160	InterPro cluster	Transglycosylase SLT domain 1	C-terminal	High	Text match	100 proteins / 142 hits
DC_0800	RBD	DC_0800	1183	1239	Novel HMM	DC_0800	C-terminal	Low	Positional only	42 proteins / 42 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Pantoea phage vB_PagM_SSEM1 [NCBI]	2721760	Uroviricota > Caudoviricetes > Chaseviridae > Loessnervirus > Loessnervirus SSEM1
Host	Pantoea agglomerans [NCBI]	549	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

YP_009859395.1 [NCBI]

Genbank nucleotide accession

NC_048875 [NCBI]

CDS location

range 39788 -> 43507
strand +

CDS

ATGGCTAGCAGAAAAGAAATGATGGGCATGGATACGGAAACTCTCCGTATGCTTGGTCTTGAGGCCGGATTATCTTTTGAGCCCGGACTCTCGAAGTCCAAAATGGTTATACAACTGGAAACTCATCAAGCTTCCGGTTGGTTAGATGTGAACAGCCAACTTCTTCATGCAGATGCGGAAGGCGGCTTTGACCACATGCAGGGCTTTACAGGTCACGAAGAACAATCCATTTCTGACGCTGCAAGAGTTGCACAATCGTTGGCTGGTGCTGGTTACACTGAAACATTCCATTCAATCATGGGTGGCGGTCGTGACCATCATGTTGATGCACTTCATCAATACATGCAGAAACTTGGTGTCTCTGCTGATGATGTTTGGATGCACATGCCAAAGGCGAATCCCAATATTCCGCCTCAGAATTTCAACATGCTGAAAGGTTATTTAAATAACCATTGGGATGATTATCAGGATATTATGCCTCCACTTGAGGGGCATTATGCTGGTGATATCATGGGCGAGTATGCTACGAATAAAGGCAGTGTTGCTGATTCGTACAACCATCTTGCATCCATGTATTTAAATAAAGCTGCTTACAACAATCCACATGCCTATGAAAAGGATGCGTCAATTGTTGCAACGCGTTTGGCTTCGGCAATGGGAAATCAATTCCTCGAAGTTGGCTATGCTGCTGCAACTGGTGCGAAGGTTGGATATCATTCTATTCTTCCACAACTTGGCTCTGATGTTGTTCGTGGTACTCAGTATCCTCGCGAACCTTTGAATGCTGCTGGTTTACCTTTGGGTGCAACTGGTTCTGCTGTTCAGGGAAATCGTGCACATTATTCTTTGGTTGCTTCTTTGCTCGGTCGTCCAGAAGGTGCTGATGAAGCATCAAGTGCGATTCGTCAGGAAGTAAGCTCAACAATGAAGTCTCTGGCATCGTCACATAAAGGCGGTGGTGAAACAGGAATGAATCCTTATCGCCACGAAACGTCAGAGCATGACTTATTGCTTGATAGTGCGACACGTTATGTTGGTATCGAAGAAGCTCGTTCAGGTTATGCAAACTTGGATGACACCTCATACAATCGCAACAACATTCAAGCTGTAATCGAAAACAGTTGGGACAAGATGGATGCTCAGGCAGCGTCTGCACCATCTGGTGTTCCCAATCCAGACCTGCGTTTACCACGTCGTGCGGAGATTGGTACTCAATGGAGTGCTGATTTAAACGAACCAATGTCGTGGAATGCTGCTCGCTCTCGTCGCGAGGGTGCCGCCATTGCAGATTTGGATGCTGCTCATGCAAACTTCCGTGATGTTGCTGATGGAAATCGTGGTGCAAGCCCGATTAAGTATCACAACATGGAACAAGGAAGTGATGAGTGGTTCAAGTTCCGTGAACAATATGATATTACCGGCTCAACAGTTGGTGGTTTCTTAGGTTCAAACAGTTATACCCGTCCGTGGGCACAGTTCATGGACAAACTTGGAGTGACAAGGAACGAAACAGCTCCCAATTCATTCCAAGAAAAGATGTTTGCCATGGGACACAAGCGAGAAGATGAAGCTCGCATCCGTGTTTCCAAAGAACTCGGTCAGGATATCCAGCAAGTTGGTGCAATAACCAACGACATGTTCCCCGGAATGATGTATTCACCAGATGGATTAATTGGTGATGACACTTTATGGGAACACAAAGCTCCTGAACGTGCTGGCAAGTTTGCAGATTTGAATGCAGGCGACCATCCAGACTACATGGACCAAGTTCAATTGGGCATGTTGCTTTCTGGACGCAAGAAAACTTTGTTCTCGCAGACGATTGGACAGCAAACACAGAATCAATGGATTGAACAAGACCCGGATTGGTACAACAGAAACCAAACTCGTCTTGATTCTGTGCTCAACCGTATGCAAGCTGGTCGTGACTTCCTCTCAAACCATGCTGACCTTCCTCAAGATGAATTGAAAGCCGGTGTTCGTAAAGCTGTAACAGGCGAAGGAATCTGGAAAGATGTTCGTCAGAAATCAGACCGTGGCTATTCTCCAAATGCTGGTACAGAAGCTGACCCATTCTTAATTGGCGGTCGTCGTTCTTATAATGACGCTGCTCAAGGTGGCTCAGATTACGAACCTAACTTTGTGACTAGTGCCAATACTGGCCTCGTACCAGTGGGCGGTAACGGCGCTGAGACGGGCATGGCGCTTGCGGTTAAGCAGGGCGTACTGGCGGCAAGGGAAGAGGTAAAACGCGGCGAGGCTTCGGGTAACGCGGCAGGATTTGATGCTGGTGGTGCCGATGCGGACTTTGACGATTTGGGTATGCCTCGCGGCTTCTCGCGTCGGGCGTTCGACCGGGCCAACAGTGATGGTGCTGGCGGTGGCGGTGGAAACGGCGGTGGACGCAATGGCGCTGGCCCAGGTGCGTTTGACAACTTCGGCAATGGGATTGCATCGGGTTTGGCAAGCGGCTCACTGCATGGGCTACAGGGCGGATTCCAGCGTGAGCTAGCAAACATGGGGCCGGTTGGTCAAACCCTATTAGCTGGTATCGGAGCGGCGTCAATTGGTGGTGAAGTCATTTCAACAATGAATGACTATCTTGGAAACTCGCAGGACTTTGGTTCTACGAATCCAATCCAGTTTGATGCTCAACAGCAAGGACTTGAAATGCTCGGCCTTAACAAAGGTCAGGCACAACGAGCAAATGAAACTGTTCATTCGATTTACAACAGGATGGCGAACGGCGACCCAAGTGGTGCTGCTCAAATCTCAGTTGCAACTCGCGGGCTGTTAACTCTTGCTGATGTTCGAGAAAGTGGTGGCGACCCAATCAAGCTGGCTGCGATGTTTAAGTCGAAAGCTCAAGCTCGTGGTTGGAGTCCAGAACGAATTGCCGGTGCTGCTGAAATGTCAGGACTCGGTGGATTTGCTCGCGCTGCTAACACCAGTGATGAAATCCAAGCTGCTGCCGAAGGTCTTGATGATACTCGTGGTCGTCAGGATACAAGCGACTTCGCTTCATCTGTTCGTAGGGATAATGCTGTTCGTGCTGCTGTATCTCCTGACTACTTTATTCAAAGATATGGTGCTCAGGATTACAATGCGTTGGTTGGTGGTTTGTCTGGTGGCATGGCGAAAGCTTATGGCGCAATGGATAAAGCTGAACAACTTACTCATGCAAACTCGCTTGCAGAAGCAACACAAATGCTTGAGTCAAATGGTCGTGATTATGATGATAAAGGTAATCCGTTAACCAGTCCTACTGGTGCCAAATACTCAATGCAAGTTCTTCCTTCTACTGCACGTGACCCTGGTTATGGAGTTAAGCCTGCTCAAAGTGATACGCCAGAAGAATACAATCGTGTTGGTCGAGAACTTCTCGACAAGATGGTTGGTAAGTATGCTGGTGATTATGACAAGGCGGCTGCTGCATATACTGATGGTTCAGGTACTGTAGACAGGGCTGTTAAACAGTGGGGCAATGACTGGCTTAAACATATGCCAGCACAAGCTCAGAAACGAGTTGCTGATTTACATAAATTGGCGGCTGGTGCAAATGGATTTGCTGGTGGTTCTACTGGACCATCTGTTGGAACCATTCAAGTTAATGTCAATGCAACTGTTAATGGCAAACAGGCAACTGCAACTGCAACTGTCGGTGGTCAATCTCAGACGCACACTATTAATGTTGGTGGCGCTGTTTCTCAGAAGCGTTAA

Genome Context

Tertiary structure

PDB ID

9f56c253f194afd621b2333914ae780e7b57fa15d8066680ccf8da4a2dcf6116

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,3435

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Complete genome sequence of Pantoea agglomerans bacteriophage vB_PagM_SSEM1	Truncaite,L., Alijosius,L., Petrauskaite,E. and Simoliunas,E.	2012-05	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature