Protein

View in Explore
Genbank accession
YP_009859395.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect
Probability 0,68
Protein sequence
MASRKEMMGMDTETLRMLGLEAGLSFEPGLSKSKMVIQLETHQASGWLDVNSQLLHADAEGGFDHMQGFTGHEEQSISDAARVAQSLAGAGYTETFHSIMGGGRDHHVDALHQYMQKLGVSADDVWMHMPKANPNIPPQNFNMLKGYLNNHWDDYQDIMPPLEGHYAGDIMGEYATNKGSVADSYNHLASMYLNKAAYNNPHAYEKDASIVATRLASAMGNQFLEVGYAAATGAKVGYHSILPQLGSDVVRGTQYPREPLNAAGLPLGATGSAVQGNRAHYSLVASLLGRPEGADEASSAIRQEVSSTMKSLASSHKGGGETGMNPYRHETSEHDLLLDSATRYVGIEEARSGYANLDDTSYNRNNIQAVIENSWDKMDAQAASAPSGVPNPDLRLPRRAEIGTQWSADLNEPMSWNAARSRREGAAIADLDAAHANFRDVADGNRGASPIKYHNMEQGSDEWFKFREQYDITGSTVGGFLGSNSYTRPWAQFMDKLGVTRNETAPNSFQEKMFAMGHKREDEARIRVSKELGQDIQQVGAITNDMFPGMMYSPDGLIGDDTLWEHKAPERAGKFADLNAGDHPDYMDQVQLGMLLSGRKKTLFSQTIGQQTQNQWIEQDPDWYNRNQTRLDSVLNRMQAGRDFLSNHADLPQDELKAGVRKAVTGEGIWKDVRQKSDRGYSPNAGTEADPFLIGGRRSYNDAAQGGSDYEPNFVTSANTGLVPVGGNGAETGMALAVKQGVLAAREEVKRGEASGNAAGFDAGGADADFDDLGMPRGFSRRAFDRANSDGAGGGGGNGGGRNGAGPGAFDNFGNGIASGLASGSLHGLQGGFQRELANMGPVGQTLLAGIGAASIGGEVISTMNDYLGNSQDFGSTNPIQFDAQQQGLEMLGLNKGQAQRANETVHSIYNRMANGDPSGAAQISVATRGLLTLADVRESGGDPIKLAAMFKSKAQARGWSPERIAGAAEMSGLGGFARAANTSDEIQAAAEGLDDTRGRQDTSDFASSVRRDNAVRAAVSPDYFIQRYGAQDYNALVGGLSGGMAKAYGAMDKAEQLTHANSLAEATQMLESNGRDYDDKGNPLTSPTGAKYSMQVLPSTARDPGYGVKPAQSDTPEEYNRVGRELLDKMVGKYAGDYDKAAAAYTDGSGTVDRAVKQWGNDWLKHMPAQAQKRVADLHKLAAGANGFAGGSTGPSVGTIQVNVNATVNGKQATATATVGGQSQTHTINVGGAVSQKR
Physico‐chemical
properties
protein length:1239 AA
molecular weight: 132124,17690 Da
isoelectric point:5,38631
aromaticity:0,07103
hydropathy:-0,57595

Domains

Domains [InterPro]
IPR011604
443–646
IPR011604 G3DSA:1.10.530.10
IPR011335
452–638
IPR011335 IPR023346
cd00254
1082–1159
cd00254
IPR008258
1086–1160
IPR008258
YP_009859395.1
1 1239
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage vB_PagM_SSEM1
[NCBI] 		2721760 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009859395.1 [NCBI]
Genbank nucleotide accession
NC_048875 [NCBI]
CDS location
range 39788 -> 43507
strand +
CDS
ATGGCTAGCAGAAAAGAAATGATGGGCATGGATACGGAAACTCTCCGTATGCTTGGTCTTGAGGCCGGATTATCTTTTGAGCCCGGACTCTCGAAGTCCAAAATGGTTATACAACTGGAAACTCATCAAGCTTCCGGTTGGTTAGATGTGAACAGCCAACTTCTTCATGCAGATGCGGAAGGCGGCTTTGACCACATGCAGGGCTTTACAGGTCACGAAGAACAATCCATTTCTGACGCTGCAAGAGTTGCACAATCGTTGGCTGGTGCTGGTTACACTGAAACATTCCATTCAATCATGGGTGGCGGTCGTGACCATCATGTTGATGCACTTCATCAATACATGCAGAAACTTGGTGTCTCTGCTGATGATGTTTGGATGCACATGCCAAAGGCGAATCCCAATATTCCGCCTCAGAATTTCAACATGCTGAAAGGTTATTTAAATAACCATTGGGATGATTATCAGGATATTATGCCTCCACTTGAGGGGCATTATGCTGGTGATATCATGGGCGAGTATGCTACGAATAAAGGCAGTGTTGCTGATTCGTACAACCATCTTGCATCCATGTATTTAAATAAAGCTGCTTACAACAATCCACATGCCTATGAAAAGGATGCGTCAATTGTTGCAACGCGTTTGGCTTCGGCAATGGGAAATCAATTCCTCGAAGTTGGCTATGCTGCTGCAACTGGTGCGAAGGTTGGATATCATTCTATTCTTCCACAACTTGGCTCTGATGTTGTTCGTGGTACTCAGTATCCTCGCGAACCTTTGAATGCTGCTGGTTTACCTTTGGGTGCAACTGGTTCTGCTGTTCAGGGAAATCGTGCACATTATTCTTTGGTTGCTTCTTTGCTCGGTCGTCCAGAAGGTGCTGATGAAGCATCAAGTGCGATTCGTCAGGAAGTAAGCTCAACAATGAAGTCTCTGGCATCGTCACATAAAGGCGGTGGTGAAACAGGAATGAATCCTTATCGCCACGAAACGTCAGAGCATGACTTATTGCTTGATAGTGCGACACGTTATGTTGGTATCGAAGAAGCTCGTTCAGGTTATGCAAACTTGGATGACACCTCATACAATCGCAACAACATTCAAGCTGTAATCGAAAACAGTTGGGACAAGATGGATGCTCAGGCAGCGTCTGCACCATCTGGTGTTCCCAATCCAGACCTGCGTTTACCACGTCGTGCGGAGATTGGTACTCAATGGAGTGCTGATTTAAACGAACCAATGTCGTGGAATGCTGCTCGCTCTCGTCGCGAGGGTGCCGCCATTGCAGATTTGGATGCTGCTCATGCAAACTTCCGTGATGTTGCTGATGGAAATCGTGGTGCAAGCCCGATTAAGTATCACAACATGGAACAAGGAAGTGATGAGTGGTTCAAGTTCCGTGAACAATATGATATTACCGGCTCAACAGTTGGTGGTTTCTTAGGTTCAAACAGTTATACCCGTCCGTGGGCACAGTTCATGGACAAACTTGGAGTGACAAGGAACGAAACAGCTCCCAATTCATTCCAAGAAAAGATGTTTGCCATGGGACACAAGCGAGAAGATGAAGCTCGCATCCGTGTTTCCAAAGAACTCGGTCAGGATATCCAGCAAGTTGGTGCAATAACCAACGACATGTTCCCCGGAATGATGTATTCACCAGATGGATTAATTGGTGATGACACTTTATGGGAACACAAAGCTCCTGAACGTGCTGGCAAGTTTGCAGATTTGAATGCAGGCGACCATCCAGACTACATGGACCAAGTTCAATTGGGCATGTTGCTTTCTGGACGCAAGAAAACTTTGTTCTCGCAGACGATTGGACAGCAAACACAGAATCAATGGATTGAACAAGACCCGGATTGGTACAACAGAAACCAAACTCGTCTTGATTCTGTGCTCAACCGTATGCAAGCTGGTCGTGACTTCCTCTCAAACCATGCTGACCTTCCTCAAGATGAATTGAAAGCCGGTGTTCGTAAAGCTGTAACAGGCGAAGGAATCTGGAAAGATGTTCGTCAGAAATCAGACCGTGGCTATTCTCCAAATGCTGGTACAGAAGCTGACCCATTCTTAATTGGCGGTCGTCGTTCTTATAATGACGCTGCTCAAGGTGGCTCAGATTACGAACCTAACTTTGTGACTAGTGCCAATACTGGCCTCGTACCAGTGGGCGGTAACGGCGCTGAGACGGGCATGGCGCTTGCGGTTAAGCAGGGCGTACTGGCGGCAAGGGAAGAGGTAAAACGCGGCGAGGCTTCGGGTAACGCGGCAGGATTTGATGCTGGTGGTGCCGATGCGGACTTTGACGATTTGGGTATGCCTCGCGGCTTCTCGCGTCGGGCGTTCGACCGGGCCAACAGTGATGGTGCTGGCGGTGGCGGTGGAAACGGCGGTGGACGCAATGGCGCTGGCCCAGGTGCGTTTGACAACTTCGGCAATGGGATTGCATCGGGTTTGGCAAGCGGCTCACTGCATGGGCTACAGGGCGGATTCCAGCGTGAGCTAGCAAACATGGGGCCGGTTGGTCAAACCCTATTAGCTGGTATCGGAGCGGCGTCAATTGGTGGTGAAGTCATTTCAACAATGAATGACTATCTTGGAAACTCGCAGGACTTTGGTTCTACGAATCCAATCCAGTTTGATGCTCAACAGCAAGGACTTGAAATGCTCGGCCTTAACAAAGGTCAGGCACAACGAGCAAATGAAACTGTTCATTCGATTTACAACAGGATGGCGAACGGCGACCCAAGTGGTGCTGCTCAAATCTCAGTTGCAACTCGCGGGCTGTTAACTCTTGCTGATGTTCGAGAAAGTGGTGGCGACCCAATCAAGCTGGCTGCGATGTTTAAGTCGAAAGCTCAAGCTCGTGGTTGGAGTCCAGAACGAATTGCCGGTGCTGCTGAAATGTCAGGACTCGGTGGATTTGCTCGCGCTGCTAACACCAGTGATGAAATCCAAGCTGCTGCCGAAGGTCTTGATGATACTCGTGGTCGTCAGGATACAAGCGACTTCGCTTCATCTGTTCGTAGGGATAATGCTGTTCGTGCTGCTGTATCTCCTGACTACTTTATTCAAAGATATGGTGCTCAGGATTACAATGCGTTGGTTGGTGGTTTGTCTGGTGGCATGGCGAAAGCTTATGGCGCAATGGATAAAGCTGAACAACTTACTCATGCAAACTCGCTTGCAGAAGCAACACAAATGCTTGAGTCAAATGGTCGTGATTATGATGATAAAGGTAATCCGTTAACCAGTCCTACTGGTGCCAAATACTCAATGCAAGTTCTTCCTTCTACTGCACGTGACCCTGGTTATGGAGTTAAGCCTGCTCAAAGTGATACGCCAGAAGAATACAATCGTGTTGGTCGAGAACTTCTCGACAAGATGGTTGGTAAGTATGCTGGTGATTATGACAAGGCGGCTGCTGCATATACTGATGGTTCAGGTACTGTAGACAGGGCTGTTAAACAGTGGGGCAATGACTGGCTTAAACATATGCCAGCACAAGCTCAGAAACGAGTTGCTGATTTACATAAATTGGCGGCTGGTGCAAATGGATTTGCTGGTGGTTCTACTGGACCATCTGTTGGAACCATTCAAGTTAATGTCAATGCAACTGTTAATGGCAAACAGGCAACTGCAACTGCAACTGTCGGTGGTCAATCTCAGACGCACACTATTAATGTTGGTGGCGCTGTTTCTCAGAAGCGTTAA

Tertiary structure

PDB ID
9f56c253f194afd621b2333914ae780e7b57fa15d8066680ccf8da4a2dcf6116
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2679
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pantoea agglomerans bacteriophage vB_PagM_SSEM1 Truncaite,L., Alijosius,L., Petrauskaite,E. and Simoliunas,E. 2012-05 — GenBank