Protein

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Genbank accession
YP_009201400.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,73
TF
Evidence RBPdetect2
Probability 0,82
Seq2Symm
C1 confidence 0,833
C1 0,833
C3 0,366
I 0,007
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MSGTNIFTHASDAAQYVYLQPFTSPGSAFESGGDVQSIMELFDDSALAPLPSLPYATTTEVGIVEYATQAEANALDDLLTVITPASLDGVDQFVSPATSTQLGNLQELRNTDLTRTYSSSDASRLLSYRRLNEMMTTRNALADDTTNESQGFAEFANLSETLAYNPDRFISPLRTWNLIKAEIPNPWAQATETYTGVLRTVAERDGYKSDGSIAITVKGLNYVKATTSKRGAFKLTQNNYDRNASDSDEYAITPGTIDNLIATPTKHGFFELPSSYVNDSTKATSAALGVDLNTLLGPDGGTITGVLKCDNIYTNIISRQKQSSYGGTYYTTVQEQREMFPNNQLDAKIGLEGRPVGSIFHCTSSVDPNEIFGGVWYKMRAGRTMMGQGIGDDGFTRRYYAAGSFSDIDRVQLYESNLPQHQHAGWGEAYTGSREGCIRYETHRSPYGVTYTCDEYNTVSYWRFGITGSRNNPGSKSTDRDNYMYYNEAVGGNEPHENMMPYYPVYIWRRVK
Physico‐chemical
properties
protein length:512 AA
molecular weight: 56657,84360 Da
isoelectric point:4,92524
aromaticity:0,10938
hydropathy:-0,52344

Domains

View on InterPro
Domain architecture
YP_009201400.1
1 512 aa
ATT 355–511 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009201400.1
1 512 aa
Domain Start End Length (AA) Confidence
N-terminal 1 305 305 0,9700
Central domain 306 501 197 0,0569
C-terminal 502 512 10 0,9974
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Vibrio phage ValKK3 [NCBI] · taxon 1610855
Uroviricota Caudoviricetes Pantevenvirales Schizotequatrovirus Schizotequatrovirus valkk3
Host
Vibrio alginolyticus NBRC 15630 = ATCC 17749 [NCBI] · taxon 1219076
Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio

Coding sequence (CDS)

Genbank protein accession
YP_009201400.1 [NCBI]
Genbank nucleotide accession
NC_028829 [NCBI]
CDS location
range 168535 -> 170073
strand -
CDS
ATGTCAGGAACAAACATATTCACGCACGCTAGTGATGCAGCGCAATATGTTTACCTACAGCCCTTCACATCGCCTGGTTCAGCGTTTGAGTCAGGCGGTGATGTGCAGAGTATAATGGAGCTATTTGACGATAGCGCATTAGCACCACTTCCGTCACTTCCGTATGCGACAACGACTGAGGTTGGTATTGTTGAGTACGCAACTCAAGCAGAAGCTAATGCACTTGACGACTTATTAACTGTAATCACACCAGCGTCACTAGACGGGGTTGACCAGTTCGTGTCTCCAGCAACCAGTACTCAGTTAGGTAATCTACAAGAATTGCGTAATACTGATTTGACAAGAACATATTCGTCATCAGATGCAAGTCGTTTGCTGTCATATCGCCGTCTAAATGAAATGATGACGACTCGTAATGCACTAGCAGATGACACAACAAACGAATCACAAGGTTTTGCTGAGTTTGCAAATCTAAGCGAAACTTTAGCATATAACCCTGACCGATTCATTTCTCCACTTAGAACGTGGAACTTAATTAAAGCAGAGATACCAAACCCTTGGGCTCAAGCGACAGAAACATACACGGGTGTGCTTCGTACTGTAGCAGAACGAGACGGGTATAAATCAGACGGTTCGATTGCAATTACAGTTAAAGGTCTTAATTACGTTAAAGCGACGACATCTAAGCGTGGTGCATTCAAATTAACACAGAACAACTATGACCGCAATGCAAGCGATTCAGATGAATATGCTATAACTCCCGGTACAATCGACAATCTAATAGCGACACCGACTAAACACGGGTTCTTTGAACTACCAAGCTCGTATGTAAACGACTCAACAAAAGCAACAAGTGCTGCACTTGGCGTTGATTTGAATACACTATTAGGCCCAGACGGTGGGACAATTACGGGTGTTTTGAAATGTGACAACATTTACACAAACATCATTTCTCGTCAAAAGCAGAGCAGTTATGGCGGAACATATTACACAACTGTTCAAGAGCAGAGGGAAATGTTCCCGAACAATCAATTAGACGCGAAGATCGGTCTTGAAGGGCGCCCTGTTGGTAGTATTTTTCACTGTACTTCATCAGTTGACCCGAATGAGATTTTCGGTGGCGTATGGTATAAGATGAGAGCAGGTCGAACTATGATGGGGCAGGGTATCGGTGATGATGGGTTCACTCGCAGATATTATGCAGCGGGTTCGTTTAGTGACATCGACCGTGTTCAGTTATACGAGAGTAATTTACCACAACACCAACATGCAGGTTGGGGTGAAGCATATACAGGCTCACGCGAGGGGTGTATTCGCTACGAAACGCATCGAAGTCCGTATGGTGTAACGTATACTTGTGATGAATATAATACTGTCAGTTACTGGAGATTCGGTATAACAGGTTCGCGTAATAATCCCGGTTCGAAATCTACTGATCGTGATAATTACATGTATTACAACGAAGCAGTTGGTGGTAATGAGCCGCATGAGAATATGATGCCATACTACCCAGTTTACATTTGGAGACGAGTTAAATGA

Genome Context

Tertiary structure

YP_009201400.1
ESMFold structure
Source ESMFold
pLDDT 62.1
Oligomeric state monomer
Download structure