Protein

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Genbank accession
AIF54342.1 [GenBank]
Protein name
collagen repeats protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MRKLYLANGNSKFKFSDTTTKIILTAFDNGIPVELTSNSKVRVKNDSGYLLDVSASIMNDEATITSGQLAQLPAGRYLLELWDTVSGGTAIYPSDGFLALQINENVTGLSGKVVSSITVDDFIEQFSGLSQQLKKQVSDAVANGLKGDKGDDGLSAYQVAVINGYKGSQTDWLASLVGAKGDKGDKGDPGKDFRIVKTFPSVAEMRGDGFSDGDFTMIASDVNDPDDGKLYVWNGNSFTFVADLSGSQGIKGDKGDKGDKGDKGDKGDQGLSAYQVAVNAGFHGGVDEWLASLVGAKGEKGERGKDAVINIISQADYDKLADKSGVYFIEG
Physico‐chemical
properties
protein length:331 AA
molecular weight: 35010,44590 Da
isoelectric point:4,66673
aromaticity:0,08459
hydropathy:-0,33716

Domains

Domains [InterPro]
IPR050149
144–304
IPR050149
AIF54342.1
1 331
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage Ld25A
[NCBI] 		1500734 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactobacillus delbrueckii
[NCBI] 		1584 Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIF54342.1 [NCBI]
Genbank nucleotide accession
KJ564036 [NCBI]
CDS location
range 15248 -> 16243
strand +
CDS
ATGAGAAAACTATATCTTGCCAACGGAAATAGCAAGTTCAAATTTTCAGATACTACAACAAAAATCATTTTGACTGCATTTGATAATGGTATCCCAGTAGAACTAACATCAAATTCAAAAGTCAGAGTCAAGAACGATTCCGGATATTTGCTGGATGTAAGTGCTAGTATCATGAACGACGAAGCTACTATTACTAGCGGACAGCTGGCGCAGTTGCCAGCCGGAAGATATCTGCTTGAACTGTGGGACACAGTAAGTGGTGGAACGGCTATCTATCCTAGTGATGGTTTTCTGGCGCTTCAAATCAACGAGAACGTCACTGGTCTTTCTGGGAAAGTCGTCAGCAGTATCACGGTTGATGACTTCATCGAGCAGTTCAGCGGTCTCAGTCAGCAACTTAAAAAACAAGTTTCTGACGCTGTAGCAAATGGCTTGAAGGGCGATAAGGGTGATGACGGACTATCCGCCTATCAAGTAGCAGTTATTAACGGCTATAAAGGTTCACAAACTGACTGGCTTGCTTCTCTGGTAGGAGCTAAAGGAGACAAGGGCGATAAAGGTGATCCGGGGAAAGACTTTAGAATCGTGAAGACTTTCCCGTCAGTTGCTGAAATGCGTGGCGATGGTTTCTCTGATGGCGATTTTACGATGATCGCCAGTGACGTCAACGATCCAGATGACGGCAAACTCTACGTGTGGAATGGCAACAGCTTTACCTTTGTAGCCGATTTAAGCGGGTCTCAAGGTATTAAGGGCGACAAGGGCGATAAGGGTGACAAAGGCGACAAGGGCGATAAAGGCGATCAAGGGCTGTCTGCTTATCAAGTTGCCGTTAATGCCGGCTTCCATGGCGGTGTTGATGAATGGCTTGCTTCTCTGGTTGGTGCTAAAGGTGAAAAAGGTGAGAGAGGCAAGGATGCCGTCATCAATATCATCTCGCAAGCCGATTATGATAAGCTGGCTGACAAGTCCGGTGTCTACTTCATTGAGGGGTGA

Tertiary structure

PDB ID
6558fd1b3b144dd733524a4270c5b00d78a71fa06883e042579ef925fb6f69c9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8384
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lactobacillus delbrueckii subsp. bulgaricus Group b Phages Casey,E.D., Mahony,J., O'Connell-Motherway,M., Bottacini,F., Cornelissen,A., Neve,H., Heller,K., Noben,J.-P., Dal Bello,F. and van Sinderen,D. 2014-09-15 — GenBank