Protein

View in Explore
Genbank accession
QIG68651.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNADLAHGPNSSAWVIGDAVVDNNGIYRKIGASGTGSWSRVSDLPFSFIVASDVGAGTPNAIQATTEIPVSESSLVILFVFEANTGSPVTVSFNGGSALTIKTRSNENVAVGGLTAGPVIGVKQGTTFRLLNDEAIAALIYAARDDAEAARDAAEDARDAAAASAAIASSLASTFIIAENTFASRTAAMAWSPVAGPDYIRTAGYAAAGDKGGALYKKVGSEPSHPGKFSITLSGSSVVWYEIADAVLTPQMFGAIADGVVDCAPALNAAIQVANARGGGMVFVPRGDHLVKSTVSMAGCSNITLAGGGWGSKIIASADLNGSDSSTKNNIIGALNFSGPVTSTAGYPQQNLTVRDLLIDGTLQSASGVPEDQFVGFSLAGFEVLNVDFVRVFNCKFVKCYGNGVVFGTQNPRQLNGSFQNGLRGCVAENNVFEECVRGLLPQYATTTSPDGLAGSVMQAGSTYGCVIKNNLVTNPGGPFLNIFNSEEAMVVGNTIKGQGTTPVGSHPTTDMIFQQPVGMIKSDFGLLNSTIADNLFVNSGGILLLGNMGSGFFNDNIPTAGPINCVIRGNRILNPPGNQSMPAFTVGASGTVYTNPYSQSIRVLIAGGTGVVVTYRRGTDGSFVAATLGPSGGITLYAGDAITVTYTTAPSSMGVLLSPNAAYSGITLVGGSVTGNSGVAMRNLIEGNVIVSPGQSCIRLTDCYHNVVRGNYLEAPGLTTAAAFIFITNALDQSGTGCIDNEFSDNHHIDQRSPIFARANIEEVRVGATARSFSNRFVSNRLESCVTSMVILTSQTNYVSGNFGPGWKSPVLTPPAVPASGVELTNPFAYDCFALVLGGTISAIAIGPAGATQTYGATGGLVPVRAGEVIKITYTVAPTVFNWFAS
Physico‐chemical
properties
protein length:887 AA
molecular weight: 91264,67990 Da
isoelectric point:5,14446
aromaticity:0,07892
hydropathy:0,18794

Domains

Domains [InterPro]
DC_1788
STR
1–540
DC_1788 DC_1620 IPR006626 DC_1620
IPR011050
STR
241–719
IPR011050
IPR012334
STR
251–604
IPR012334 IPR012334
IPR024535
ENZ
253–333
IPR024535 IPR006626 IPR006626 IPR006626 IPR006626
QIG68651.1
1 887
Architecture
STR
RBD
STR 1-801 | RBD 802-887
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG68651.1
1 887
Domain Start End Length (AA) Confidence
N-terminal 1 261 261 0,9863
Central domain 262 607 347 0,9941
C-terminal 608 887 279 0,2604
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-261
Central
262-607
C-terminal
608-887

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_TM3_3_14B
[NCBI] 		2509575 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG68651.1 [NCBI]
Genbank nucleotide accession
MN988496.1 [NCBI]
CDS location
range 22 -> 2685
strand +
CDS
ATGAACGCCGATCTGGCGCATGGCCCCAATTCCTCGGCTTGGGTCATCGGTGATGCCGTCGTAGACAATAACGGCATATATCGGAAGATCGGGGCGTCTGGCACCGGTTCATGGTCGCGGGTTTCGGACCTGCCGTTCTCCTTTATCGTTGCTTCTGACGTCGGTGCCGGTACGCCCAATGCCATTCAGGCCACAACGGAGATCCCGGTATCGGAATCCTCGCTGGTTATCCTGTTCGTTTTTGAAGCCAACACTGGCAGCCCCGTCACTGTGTCTTTCAATGGCGGCTCCGCGCTGACGATCAAGACCCGCAGCAATGAAAATGTTGCTGTTGGCGGACTGACCGCGGGACCGGTGATTGGCGTCAAGCAGGGAACGACTTTCCGTCTGCTCAATGATGAGGCTATCGCGGCACTCATCTATGCGGCCAGGGATGATGCCGAGGCTGCGAGAGACGCTGCTGAAGATGCGCGTGACGCTGCGGCTGCGTCCGCCGCCATTGCATCGAGCCTGGCGTCGACATTCATCATTGCTGAAAACACCTTCGCCTCGCGCACTGCCGCGATGGCGTGGAGCCCCGTAGCAGGACCAGATTACATCCGCACAGCCGGCTATGCGGCTGCCGGGGATAAAGGCGGAGCTCTTTACAAGAAGGTTGGCAGTGAGCCTTCCCACCCAGGCAAGTTCTCCATCACTCTCTCGGGCAGCAGCGTCGTCTGGTATGAGATTGCCGATGCCGTCTTGACACCGCAGATGTTCGGCGCAATCGCCGACGGCGTGGTGGATTGCGCGCCTGCCCTGAATGCCGCGATACAGGTGGCGAATGCGCGCGGCGGCGGCATGGTTTTCGTCCCGCGTGGCGACCATCTGGTTAAGTCGACTGTATCGATGGCTGGATGCTCCAACATCACTCTCGCCGGTGGCGGCTGGGGCTCCAAGATTATCGCTTCGGCGGATCTGAATGGATCGGACAGCTCGACGAAAAACAACATCATCGGCGCGCTGAATTTCAGCGGACCGGTGACGTCGACCGCTGGCTATCCGCAGCAAAACCTAACGGTTCGTGATCTGCTCATCGATGGAACGCTCCAGAGCGCATCTGGCGTTCCAGAAGACCAGTTTGTTGGATTTTCGCTCGCTGGTTTCGAAGTCCTCAATGTCGACTTCGTGCGTGTTTTCAACTGCAAATTCGTGAAGTGCTACGGCAACGGCGTCGTCTTCGGCACGCAGAACCCGCGTCAGCTAAACGGTTCGTTTCAGAATGGACTCCGTGGCTGCGTCGCCGAAAACAATGTGTTTGAGGAATGCGTTCGTGGCCTGCTCCCGCAGTATGCCACGACGACATCACCAGACGGCTTGGCTGGCAGTGTTATGCAGGCTGGATCTACCTACGGATGCGTGATCAAAAACAACCTGGTAACCAACCCAGGCGGCCCGTTTCTGAATATATTCAATTCAGAAGAGGCGATGGTTGTGGGGAACACAATCAAGGGGCAGGGCACAACTCCCGTAGGCTCTCATCCGACGACTGATATGATTTTTCAGCAGCCGGTCGGGATGATCAAGTCGGATTTTGGTCTGCTCAATTCGACGATCGCCGATAACCTTTTTGTTAACAGTGGGGGTATCCTCCTGCTTGGCAATATGGGCAGTGGCTTCTTCAACGACAACATACCGACAGCCGGCCCGATCAATTGCGTCATACGTGGGAACAGGATTCTAAACCCACCTGGCAACCAGTCGATGCCTGCCTTCACGGTGGGCGCATCTGGAACTGTCTACACAAATCCATATAGCCAAAGCATTCGTGTTTTGATTGCGGGTGGTACTGGAGTTGTGGTCACATATCGCCGCGGCACCGATGGGAGTTTTGTGGCAGCCACGCTCGGGCCATCTGGCGGCATTACGCTATATGCTGGTGACGCGATAACTGTCACCTACACTACCGCACCGTCATCGATGGGCGTGCTGTTGTCGCCGAACGCCGCTTATTCCGGCATCACTCTAGTGGGCGGTTCCGTCACAGGCAATTCCGGCGTTGCCATGCGAAACCTCATAGAGGGGAACGTGATCGTATCCCCTGGTCAGTCGTGCATTCGGTTGACTGACTGCTATCACAACGTCGTGCGTGGCAATTATCTAGAGGCTCCAGGCCTCACCACTGCCGCAGCGTTCATCTTCATCACCAACGCGCTTGACCAGAGCGGCACTGGTTGCATCGATAACGAGTTCTCTGACAACCATCATATCGATCAACGCTCACCGATCTTTGCGAGAGCCAACATCGAAGAGGTCAGGGTTGGCGCAACCGCGCGCAGCTTCAGCAACCGCTTCGTAAGCAATCGTCTTGAATCTTGCGTCACGTCTATGGTGATTTTGACGTCTCAGACGAACTACGTGTCAGGCAACTTCGGCCCTGGTTGGAAGAGCCCGGTTCTTACGCCGCCTGCCGTTCCGGCATCGGGTGTCGAGCTGACAAACCCGTTTGCATACGACTGCTTTGCGCTGGTGCTTGGCGGAACGATAAGCGCCATCGCCATCGGCCCGGCAGGAGCAACGCAGACTTACGGGGCAACGGGCGGCCTCGTTCCGGTTAGGGCGGGCGAGGTCATCAAGATCACCTACACCGTGGCGCCTACCGTGTTCAACTGGTTTGCTTCGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
c44c83132a968c8f252a414797d1c56f22c596648f2e7a09d40782e1f6a97553
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2956
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank