Protein

View in Explore
Genbank accession
QIG68651.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
TF
Evidence Phold
Probability 1,00
Protein sequence
MNADLAHGPNSSAWVIGDAVVDNNGIYRKIGASGTGSWSRVSDLPFSFIVASDVGAGTPNAIQATTEIPVSESSLVILFVFEANTGSPVTVSFNGGSALTIKTRSNENVAVGGLTAGPVIGVKQGTTFRLLNDEAIAALIYAARDDAEAARDAAEDARDAAAASAAIASSLASTFIIAENTFASRTAAMAWSPVAGPDYIRTAGYAAAGDKGGALYKKVGSEPSHPGKFSITLSGSSVVWYEIADAVLTPQMFGAIADGVVDCAPALNAAIQVANARGGGMVFVPRGDHLVKSTVSMAGCSNITLAGGGWGSKIIASADLNGSDSSTKNNIIGALNFSGPVTSTAGYPQQNLTVRDLLIDGTLQSASGVPEDQFVGFSLAGFEVLNVDFVRVFNCKFVKCYGNGVVFGTQNPRQLNGSFQNGLRGCVAENNVFEECVRGLLPQYATTTSPDGLAGSVMQAGSTYGCVIKNNLVTNPGGPFLNIFNSEEAMVVGNTIKGQGTTPVGSHPTTDMIFQQPVGMIKSDFGLLNSTIADNLFVNSGGILLLGNMGSGFFNDNIPTAGPINCVIRGNRILNPPGNQSMPAFTVGASGTVYTNPYSQSIRVLIAGGTGVVVTYRRGTDGSFVAATLGPSGGITLYAGDAITVTYTTAPSSMGVLLSPNAAYSGITLVGGSVTGNSGVAMRNLIEGNVIVSPGQSCIRLTDCYHNVVRGNYLEAPGLTTAAAFIFITNALDQSGTGCIDNEFSDNHHIDQRSPIFARANIEEVRVGATARSFSNRFVSNRLESCVTSMVILTSQTNYVSGNFGPGWKSPVLTPPAVPASGVELTNPFAYDCFALVLGGTISAIAIGPAGATQTYGATGGLVPVRAGEVIKITYTVAPTVFNWFAS
Physico‐chemical
properties
protein length:887 AA
molecular weight: 91264,67990 Da
isoelectric point:5,14446
aromaticity:0,07892
hydropathy:0,18794

Domains

Domains [InterPro]
IPR011050
241–719
IPR011050
IPR012334
251–604
IPR012334 IPR012334
IPR024535
253–333
IPR024535 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
QIG68651.1
1 887
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_TM3_3_14B
[NCBI] 		2509575 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG68651.1 [NCBI]
Genbank nucleotide accession
MN988496 [NCBI]
CDS location
range 22 -> 2685
strand +
CDS
ATGAACGCCGATCTGGCGCATGGCCCCAATTCCTCGGCTTGGGTCATCGGTGATGCCGTCGTAGACAATAACGGCATATATCGGAAGATCGGGGCGTCTGGCACCGGTTCATGGTCGCGGGTTTCGGACCTGCCGTTCTCCTTTATCGTTGCTTCTGACGTCGGTGCCGGTACGCCCAATGCCATTCAGGCCACAACGGAGATCCCGGTATCGGAATCCTCGCTGGTTATCCTGTTCGTTTTTGAAGCCAACACTGGCAGCCCCGTCACTGTGTCTTTCAATGGCGGCTCCGCGCTGACGATCAAGACCCGCAGCAATGAAAATGTTGCTGTTGGCGGACTGACCGCGGGACCGGTGATTGGCGTCAAGCAGGGAACGACTTTCCGTCTGCTCAATGATGAGGCTATCGCGGCACTCATCTATGCGGCCAGGGATGATGCCGAGGCTGCGAGAGACGCTGCTGAAGATGCGCGTGACGCTGCGGCTGCGTCCGCCGCCATTGCATCGAGCCTGGCGTCGACATTCATCATTGCTGAAAACACCTTCGCCTCGCGCACTGCCGCGATGGCGTGGAGCCCCGTAGCAGGACCAGATTACATCCGCACAGCCGGCTATGCGGCTGCCGGGGATAAAGGCGGAGCTCTTTACAAGAAGGTTGGCAGTGAGCCTTCCCACCCAGGCAAGTTCTCCATCACTCTCTCGGGCAGCAGCGTCGTCTGGTATGAGATTGCCGATGCCGTCTTGACACCGCAGATGTTCGGCGCAATCGCCGACGGCGTGGTGGATTGCGCGCCTGCCCTGAATGCCGCGATACAGGTGGCGAATGCGCGCGGCGGCGGCATGGTTTTCGTCCCGCGTGGCGACCATCTGGTTAAGTCGACTGTATCGATGGCTGGATGCTCCAACATCACTCTCGCCGGTGGCGGCTGGGGCTCCAAGATTATCGCTTCGGCGGATCTGAATGGATCGGACAGCTCGACGAAAAACAACATCATCGGCGCGCTGAATTTCAGCGGACCGGTGACGTCGACCGCTGGCTATCCGCAGCAAAACCTAACGGTTCGTGATCTGCTCATCGATGGAACGCTCCAGAGCGCATCTGGCGTTCCAGAAGACCAGTTTGTTGGATTTTCGCTCGCTGGTTTCGAAGTCCTCAATGTCGACTTCGTGCGTGTTTTCAACTGCAAATTCGTGAAGTGCTACGGCAACGGCGTCGTCTTCGGCACGCAGAACCCGCGTCAGCTAAACGGTTCGTTTCAGAATGGACTCCGTGGCTGCGTCGCCGAAAACAATGTGTTTGAGGAATGCGTTCGTGGCCTGCTCCCGCAGTATGCCACGACGACATCACCAGACGGCTTGGCTGGCAGTGTTATGCAGGCTGGATCTACCTACGGATGCGTGATCAAAAACAACCTGGTAACCAACCCAGGCGGCCCGTTTCTGAATATATTCAATTCAGAAGAGGCGATGGTTGTGGGGAACACAATCAAGGGGCAGGGCACAACTCCCGTAGGCTCTCATCCGACGACTGATATGATTTTTCAGCAGCCGGTCGGGATGATCAAGTCGGATTTTGGTCTGCTCAATTCGACGATCGCCGATAACCTTTTTGTTAACAGTGGGGGTATCCTCCTGCTTGGCAATATGGGCAGTGGCTTCTTCAACGACAACATACCGACAGCCGGCCCGATCAATTGCGTCATACGTGGGAACAGGATTCTAAACCCACCTGGCAACCAGTCGATGCCTGCCTTCACGGTGGGCGCATCTGGAACTGTCTACACAAATCCATATAGCCAAAGCATTCGTGTTTTGATTGCGGGTGGTACTGGAGTTGTGGTCACATATCGCCGCGGCACCGATGGGAGTTTTGTGGCAGCCACGCTCGGGCCATCTGGCGGCATTACGCTATATGCTGGTGACGCGATAACTGTCACCTACACTACCGCACCGTCATCGATGGGCGTGCTGTTGTCGCCGAACGCCGCTTATTCCGGCATCACTCTAGTGGGCGGTTCCGTCACAGGCAATTCCGGCGTTGCCATGCGAAACCTCATAGAGGGGAACGTGATCGTATCCCCTGGTCAGTCGTGCATTCGGTTGACTGACTGCTATCACAACGTCGTGCGTGGCAATTATCTAGAGGCTCCAGGCCTCACCACTGCCGCAGCGTTCATCTTCATCACCAACGCGCTTGACCAGAGCGGCACTGGTTGCATCGATAACGAGTTCTCTGACAACCATCATATCGATCAACGCTCACCGATCTTTGCGAGAGCCAACATCGAAGAGGTCAGGGTTGGCGCAACCGCGCGCAGCTTCAGCAACCGCTTCGTAAGCAATCGTCTTGAATCTTGCGTCACGTCTATGGTGATTTTGACGTCTCAGACGAACTACGTGTCAGGCAACTTCGGCCCTGGTTGGAAGAGCCCGGTTCTTACGCCGCCTGCCGTTCCGGCATCGGGTGTCGAGCTGACAAACCCGTTTGCATACGACTGCTTTGCGCTGGTGCTTGGCGGAACGATAAGCGCCATCGCCATCGGCCCGGCAGGAGCAACGCAGACTTACGGGGCAACGGGCGGCCTCGTTCCGGTTAGGGCGGGCGAGGTCATCAAGATCACCTACACCGTGGCGCCTACCGTGTTCAACTGGTTTGCTTCGTAG

Tertiary structure

PDB ID
c44c83132a968c8f252a414797d1c56f22c596648f2e7a09d40782e1f6a97553
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2531
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank