Protein

View in Explore
Genbank accession
UXR08343.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Seq2Symm
C1 confidence 1,000
C1 1,000
C3 0,004
D6-D12 0,001
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MYINNGRINYNNEYGYRRGIYREPFYSDNADYNTNSKSYYDYLARFNGFIFELCDFVNGLADDIQKMKETYDALTLSNTDVTYTVGQKGDFDTLNHCFDYIENLIVQPKSIRVILLKDYMMREQLFLRDKRYNHITITSENDIVEAYETELNRQIEIKTNPIFRVKPLFYGINSTFPKIDFKLQNKDFSDTINCGFLMDNTTFEMTERGGSTHFNFIGLCGVNGSHIQTNYCDFSYNGNREQLEEYNKDQDMYGDGLRIFNSSLTGNYMTVNRCGEIGIHFSHGASGYIDFTEARFNGHHGLMVTTGSQASARNCKITDTIDDNVVSYASSDIDLRYSDCSNSQTTYGCIATRSSNINFDKGIANGCGASGIMANRGCSIDATGATASRNKWHGVIASNNSKVDFTSGNANENGLDGIQCTHGSTVQARLSTTNGNKRNGVLAYAGDVYCQLINCDGNGRRGLEATRGGYVAAYGAKVSRSKDDNVLAYGSVISVNEAVIERAGRNGIEATRGGQIFADRITITGSGDFGILAYASKVFAEASNISGTKNEPVYATRGGEITCFGSNISSNKTVYNVYNGSRIFTDKDHGYSTNVDPQTLSSKGLIILG
Physico‐chemical
properties
protein length:609 AA
molecular weight: 67366,72700 Da
isoelectric point:5,65198
aromaticity:0,10837
hydropathy:-0,46322

Domains

View on InterPro
Domain architecture
UXR08343.1
1 609 aa
STR 220–455 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
UXR08343.1
1 609 aa
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,2450
Central domain 11 588 579 0,9197
C-terminal 589 609 20 0,4896
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Staphylococcus phage vB_ScaM-V1SC05 [NCBI] · taxon 2983350
Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes
Host
Staphylococcus capitis [NCBI] · taxon 29388
cellular organisms Bacteria Bacillati Bacillota Bacilli Bacillales

Coding sequence (CDS)

Genbank protein accession
UXR08343.1 [NCBI]
Genbank nucleotide accession
OP297179.1 [NCBI]
CDS location
range 3725 -> 5554
strand +
CDS
ATGTATATAAATAACGGTCGAATCAATTATAATAATGAATACGGGTATCGTCGTGGGATATATCGTGAACCATTTTACAGTGATAATGCAGATTATAATACCAATTCAAAATCATATTATGATTATTTAGCGCGATTTAATGGTTTTATTTTTGAATTATGTGATTTTGTAAATGGACTAGCAGATGATATACAAAAAATGAAAGAAACATACGACGCATTAACATTATCAAATACAGATGTGACTTATACAGTAGGACAAAAAGGCGATTTTGACACATTGAATCATTGTTTTGATTACATTGAAAATTTAATTGTTCAACCTAAATCAATACGTGTCATTTTACTTAAAGATTACATGATGCGTGAACAATTATTCTTACGTGATAAACGTTATAATCATATTACGATTACATCAGAAAATGATATTGTTGAAGCCTATGAAACAGAATTAAACAGACAAATAGAAATTAAAACAAATCCTATTTTTAGAGTAAAACCACTATTTTATGGAATAAATTCAACATTCCCTAAAATTGATTTTAAACTACAAAATAAAGACTTTTCAGATACCATTAATTGTGGTTTCTTAATGGATAATACAACGTTTGAAATGACTGAACGTGGTGGTTCAACACACTTTAATTTTATTGGGTTATGTGGTGTTAATGGTTCACATATTCAAACCAACTATTGTGATTTTTCATACAATGGTAATCGTGAACAATTAGAAGAGTATAATAAAGACCAAGATATGTATGGTGACGGTTTAAGAATATTTAACTCATCATTAACAGGTAACTATATGACAGTTAATCGTTGTGGTGAAATTGGTATACATTTCTCACATGGTGCAAGTGGTTATATTGATTTTACCGAAGCAAGATTTAACGGACACCATGGTTTAATGGTGACAACAGGTTCACAAGCCAGTGCAAGAAACTGTAAAATTACAGATACCATTGATGATAATGTTGTAAGTTATGCGTCAAGTGATATTGATTTAAGATATTCAGATTGTTCGAATTCACAAACAACGTATGGGTGTATTGCTACACGTTCATCAAACATTAACTTTGATAAAGGGATTGCTAATGGTTGTGGTGCAAGTGGTATTATGGCAAACAGGGGTTGTTCTATTGACGCCACAGGTGCAACGGCTTCACGTAATAAATGGCATGGTGTCATTGCAAGTAATAACTCAAAAGTGGATTTCACAAGTGGTAATGCGAATGAAAACGGACTCGACGGAATCCAATGTACACATGGTTCAACTGTTCAAGCAAGATTATCAACAACCAATGGTAATAAAAGAAATGGTGTACTTGCCTATGCAGGTGATGTTTATTGCCAATTGATTAATTGTGATGGAAATGGTCGTCGTGGATTAGAAGCTACACGTGGTGGTTATGTCGCAGCGTACGGGGCAAAGGTTTCACGTTCAAAAGATGATAACGTACTTGCTTATGGTTCAGTCATTTCTGTCAATGAAGCAGTGATTGAACGTGCAGGTCGTAATGGTATTGAAGCCACACGTGGTGGTCAAATATTTGCAGATAGAATCACAATCACAGGTAGTGGTGATTTTGGTATTTTAGCTTATGCGTCTAAAGTGTTCGCCGAAGCGTCAAATATTTCAGGTACTAAAAACGAACCCGTTTATGCGACACGTGGTGGGGAAATAACATGCTTTGGTTCAAATATTTCAAGTAACAAAACAGTTTATAACGTGTATAATGGTAGTAGGATATTTACAGATAAAGACCATGGATATTCTACCAATGTTGACCCTCAAACATTATCAAGTAAAGGGTTGATTATTCTAGGGTAG

Genome Context

Tertiary structure

UXR08343.1
ESMFold structure
Source ESMFold
pLDDT 87.4
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
An innovative bacteriophage-based decontamination to control environmental colonization of intensive care units with Staphylococcus capitis: an in vitro proof-of-concept Chavignon,M. and Kolenda,C. 2022-11-16 — GenBank