Protein

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Genbank accession
UXR08343.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,90
Protein sequence
MYINNGRINYNNEYGYRRGIYREPFYSDNADYNTNSKSYYDYLARFNGFIFELCDFVNGLADDIQKMKETYDALTLSNTDVTYTVGQKGDFDTLNHCFDYIENLIVQPKSIRVILLKDYMMREQLFLRDKRYNHITITSENDIVEAYETELNRQIEIKTNPIFRVKPLFYGINSTFPKIDFKLQNKDFSDTINCGFLMDNTTFEMTERGGSTHFNFIGLCGVNGSHIQTNYCDFSYNGNREQLEEYNKDQDMYGDGLRIFNSSLTGNYMTVNRCGEIGIHFSHGASGYIDFTEARFNGHHGLMVTTGSQASARNCKITDTIDDNVVSYASSDIDLRYSDCSNSQTTYGCIATRSSNINFDKGIANGCGASGIMANRGCSIDATGATASRNKWHGVIASNNSKVDFTSGNANENGLDGIQCTHGSTVQARLSTTNGNKRNGVLAYAGDVYCQLINCDGNGRRGLEATRGGYVAAYGAKVSRSKDDNVLAYGSVISVNEAVIERAGRNGIEATRGGQIFADRITITGSGDFGILAYASKVFAEASNISGTKNEPVYATRGGEITCFGSNISSNKTVYNVYNGSRIFTDKDHGYSTNVDPQTLSSKGLIILG
Physico‐chemical
properties
protein length:609 AA
molecular weight: 67366,72700 Da
isoelectric point:5,65198
aromaticity:0,10837
hydropathy:-0,46322

Domains

Domains [InterPro]
DC_1478
STR
4–609
DC_1478
IPR012332
STR
220–451
IPR012332
IPR039448
ENZ
301–455
IPR039448
UXR08343.1
1 609
Architecture
STR
STR 4-609
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UXR08343.1
1 609
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,2450
Central domain 11 588 579 0,9197
C-terminal 589 609 20 0,4896
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-588
C-terminal
589-609

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_ScaM-V1SC05
[NCBI] 		2983350 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus capitis
[NCBI] 		29388 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UXR08343.1 [NCBI]
Genbank nucleotide accession
OP297179.1 [NCBI]
CDS location
range 3725 -> 5554
strand +
CDS
ATGTATATAAATAACGGTCGAATCAATTATAATAATGAATACGGGTATCGTCGTGGGATATATCGTGAACCATTTTACAGTGATAATGCAGATTATAATACCAATTCAAAATCATATTATGATTATTTAGCGCGATTTAATGGTTTTATTTTTGAATTATGTGATTTTGTAAATGGACTAGCAGATGATATACAAAAAATGAAAGAAACATACGACGCATTAACATTATCAAATACAGATGTGACTTATACAGTAGGACAAAAAGGCGATTTTGACACATTGAATCATTGTTTTGATTACATTGAAAATTTAATTGTTCAACCTAAATCAATACGTGTCATTTTACTTAAAGATTACATGATGCGTGAACAATTATTCTTACGTGATAAACGTTATAATCATATTACGATTACATCAGAAAATGATATTGTTGAAGCCTATGAAACAGAATTAAACAGACAAATAGAAATTAAAACAAATCCTATTTTTAGAGTAAAACCACTATTTTATGGAATAAATTCAACATTCCCTAAAATTGATTTTAAACTACAAAATAAAGACTTTTCAGATACCATTAATTGTGGTTTCTTAATGGATAATACAACGTTTGAAATGACTGAACGTGGTGGTTCAACACACTTTAATTTTATTGGGTTATGTGGTGTTAATGGTTCACATATTCAAACCAACTATTGTGATTTTTCATACAATGGTAATCGTGAACAATTAGAAGAGTATAATAAAGACCAAGATATGTATGGTGACGGTTTAAGAATATTTAACTCATCATTAACAGGTAACTATATGACAGTTAATCGTTGTGGTGAAATTGGTATACATTTCTCACATGGTGCAAGTGGTTATATTGATTTTACCGAAGCAAGATTTAACGGACACCATGGTTTAATGGTGACAACAGGTTCACAAGCCAGTGCAAGAAACTGTAAAATTACAGATACCATTGATGATAATGTTGTAAGTTATGCGTCAAGTGATATTGATTTAAGATATTCAGATTGTTCGAATTCACAAACAACGTATGGGTGTATTGCTACACGTTCATCAAACATTAACTTTGATAAAGGGATTGCTAATGGTTGTGGTGCAAGTGGTATTATGGCAAACAGGGGTTGTTCTATTGACGCCACAGGTGCAACGGCTTCACGTAATAAATGGCATGGTGTCATTGCAAGTAATAACTCAAAAGTGGATTTCACAAGTGGTAATGCGAATGAAAACGGACTCGACGGAATCCAATGTACACATGGTTCAACTGTTCAAGCAAGATTATCAACAACCAATGGTAATAAAAGAAATGGTGTACTTGCCTATGCAGGTGATGTTTATTGCCAATTGATTAATTGTGATGGAAATGGTCGTCGTGGATTAGAAGCTACACGTGGTGGTTATGTCGCAGCGTACGGGGCAAAGGTTTCACGTTCAAAAGATGATAACGTACTTGCTTATGGTTCAGTCATTTCTGTCAATGAAGCAGTGATTGAACGTGCAGGTCGTAATGGTATTGAAGCCACACGTGGTGGTCAAATATTTGCAGATAGAATCACAATCACAGGTAGTGGTGATTTTGGTATTTTAGCTTATGCGTCTAAAGTGTTCGCCGAAGCGTCAAATATTTCAGGTACTAAAAACGAACCCGTTTATGCGACACGTGGTGGGGAAATAACATGCTTTGGTTCAAATATTTCAAGTAACAAAACAGTTTATAACGTGTATAATGGTAGTAGGATATTTACAGATAAAGACCATGGATATTCTACCAATGTTGACCCTCAAACATTATCAAGTAAAGGGTTGATTATTCTAGGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
12edbb08da3db6a365c3774bbb25d019dde5a2906cf97fd6d727083126952e63
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8735
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
An innovative bacteriophage-based decontamination to control environmental colonization of intensive care units with Staphylococcus capitis: an in vitro proof-of-concept Chavignon,M. and Kolenda,C. 2022-11-16 — GenBank