Phage RBP Database

Genbank accession

GENB_1b6fb8b110c9 [GenBank]

Protein name

tail spike protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Seq2Symm

C3 confidence 0,973

C3	0,973
C1	0,045
C6	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MFIRDLQGNEYFLQGIVKHDQELNGDERIDIDIEYTDINSEFLDKQDDLKMWIILFEGKEYRIISSKQTGFGNKYQISVTAVLYMLDWLNTSRIYQRIDESLTVTEAFNIVFNDTPFTYSTVESAPSNSFEGIGEGETRLEIFKTFIDRYGYEFNIVGNVVYLQNRLGNDANFEYRYKVNTQDITKEVDASEMWTHAKGFGNYSDDDENTDVIDKAKLKREYTSPLADIIGIREAPPIRDGRVTQQATMDANLKKIVDESVQISFTADIYDMSQQGYNYQHAVIGDRVFLVDERIGLDTEIRVVKISKSVNDLEQILDMEITFGTGNMADQYGSNLSTAARDIADLIQGRKSLPFQALDIISKSMVTKIQNTTSEIIYDTNGQHFMDKKNNNNIMTMNSSGLLLSTDGGKTAKTAITAEGIVANTITTGTLNTNLISIRGGDNTDFIEMTNQYIFVHGQYYRNWKNINRKERGYVRIGEGMIRFRNEDTQSSVYMSHFGISTQIDASLASGTLNFFDDAYSDNAQGVTLNSVNGVAALTSDNNRVYVESKDSANINSMVAPVYIRPNVTTSEGLNEFSFTLANTGGATSTNGYLMYGSSSGYKYGAGLRFTKNQNGKTVSVVDGDYATGGETTIESGIGSFNKVDRRSGNDYLYIVGDYYMQVGNDASRRVASDAIYKRTYSAGANMVITEEGTLGRSTSASKYKLSIENQYTEPNDQLEHSKNILNLDVKSWFDKAESEIVSKECEEGCRISDDAFKLKRHVGLIAEDVESVGLSEYVDYNTEGGVESIQYDRLWVHLIPIIKEQQKRLEELENGTTN

Physico‐chemical properties

protein length:	819 AA
molecular weight:	91936,89260 Da
isoelectric point:	4,72488
aromaticity:	0,09768
hydropathy:	-0,48376

Domain architecture

GENB_1b6fb8b110c9

1 819 aa

STR 85–168 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:3.55.50.40
STR

G3DSA:3.55.50.40

GENB_1b6fb8b110c9

1819 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1564
ATT

DC_1564 DC_0661

GENB_1b6fb8b110c9

1819 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:3.55.50.40	STR	G3DSA:3.55.50.40	85	168	Merged direct domain	G3DSA:3.55.50.40	Central	Low	Positional only	63 proteins / 63 hits

Proteins with similar domain architecture

Phage

Staphylococcus phage Lyfv1 [NCBI] · taxon 3464058

Viruses

Host No host information

Genbank protein accession

PX375451.1_CDS_[17929..20388] [NCBI]

Genbank nucleotide accession

PX375451.1 [NCBI]

CDS location

range 17929 -> 20388
strand +

CDS

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)