Phage RBP Database

Genbank accession

YP_010083325.1 [GenBank]

Protein name

tail family protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,86

Protein sequence

MQSFVKIIDGYKEEVITDFNQLIFLDARAESPNTNDNSVTINGVDGILPGAISFAPFSLVLRFGYDGIDVIDLNLFEHWFRSVFNRRHPYYVITSQMPGVKYAVNTANVTSNLKDGSSTEIEVSLNVYKGYSESVNWTDSEFLFDSNWMFENGIPLDFTPKYTHTSNQFTIWNGSTDTINPRFKHDLKILINLNASGGFELVNYTTGDIFKYNKSIDKNTDFVLDGVYAYRDINRVGIDTNRGIITLAPGKNEFKIKGDVSDIKTTFKFPFIYR

Physico‐chemical properties

protein length:	274 AA
molecular weight:	31189,61160 Da
isoelectric point:	5,14304
aromaticity:	0,14234
hydropathy:	-0,26131

Domain architecture

YP_010083325.1

1 274 aa

STR 8–126 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR008841
STR

IPR008841

YP_010083325.1

1274 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0197
STR

DC_0197

YP_010083325.1

1274 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR008841	STR	DC_0499	8	126	InterPro cluster	Siphovirus-type tail component, RIFT-related domain	Central	Low	Positional only	178 proteins / 178 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_010083325.1

1 274 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	192	192	0,9413
Central domain	193	263	72	0,1222
C-terminal	264	274	10	0,2631

Note: Constraints were applied during segmentation.
Fixed 8 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Staphylococcus phage LH1 [NCBI] · taxon 1296641

Uroviricota Caudoviricetes Triavirus

Host

Staphylococcus aureus [NCBI] · taxon 1280

cellular organisms Bacteria Bacillati Bacillota Bacilli Bacillales

Genbank protein accession

YP_010083325.1 [NCBI]

Genbank nucleotide accession

NC_055041 [NCBI]

CDS location

range 14739 -> 15563
strand +

CDS

ATGCAATCTTTTGTAAAAATCATAGATGGTTACAAGGAAGAAGTAATAACAGATTTTAATCAGCTTATATTTTTAGATGCAAGGGCTGAAAGTCCAAACACCAATGATAACAGTGTAACTATTAACGGAGTAGATGGTATTTTACCGGGCGCAATTAGTTTTGCGCCTTTTTCATTAGTATTAAGGTTTGGCTATGATGGTATAGATGTTATAGATTTAAATTTATTTGAGCATTGGTTTAGATCTGTGTTTAATCGCAGACATCCTTATTATGTTATTACTTCTCAAATGCCTGGTGTTAAATATGCAGTGAATACAGCTAATGTTACATCTAATTTAAAAGATGGTTCTTCAACTGAAATTGAAGTAAGTTTAAATGTTTATAAAGGGTATTCTGAATCAGTTAATTGGACCGATAGCGAGTTCTTATTCGACTCTAATTGGATGTTTGAAAATGGAATTCCTCTTGATTTCACACCTAAATATACTCATACATCAAATCAATTTACTATTTGGAACGGTTCTACTGATACGATAAATCCACGATTCAAGCACGATTTGAAAATATTAATTAATTTAAATGCGAGTGGAGGATTTGAACTGGTTAACTATACAACAGGTGATATTTTTAAGTACAACAAAAGTATAGATAAAAACACTGATTTTGTTTTAGATGGTGTGTATGCATATCGAGATATAAATAGAGTGGGAATTGATACAAATAGAGGCATTATAACATTAGCGCCAGGTAAAAATGAATTTAAGATTAAAGGAGACGTCAGTGATATTAAAACTACATTTAAGTTTCCTTTTATTTATAGGTAG

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)