Protein

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Genbank accession
YP_009844292.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MAKQKGDIRRQASLGTELKRNINNNNSTSDLVLARVSKVDYENNSIEYIVQTNGMNNSSGAISNGGARLPVSFGGKNGYGNPYGSVNTIRVNDIVLIGFVGGKKNSPIVISKYLSDEDAYMLSDYSGDQYMAPNDEDMYDKTNSYRDLYPDLTYSYHNGNGYYEHTFSGNSFLVMDDYDIKGNFVDYPVGEVDASTYYSLRGNKYKDGTNFDTLNYLAPNIFFKHQGSYLLDDNGEEKLDHHQTNVSISPQGTTRLTTFHDDDKWLSLFSIDGDNGEISLTRENDNSINIGDTSDSNATFTIDKDNNLILSSGNTKMTLSDGHHIIASDLDTDSDKIDLYQSALNNKNSISGINNSINSINNNMSSSSSSLSTVNDQVNMSASSISQTNAIASSIYGNATTSVNMFSLASSIANTEIDSNTGFYKENNGSLSTPKMAAIRNFNYILTAYSVTSPITIKIAFYDLNKNFINEKEVTGNSGDISVTAISPDNAVYISASVSSNAFKVKLEQADKVTSWSPSIVDLYTNNNTVLELLSAAKIAQADTNAKMSTVTSNNYLNSLLQYNNDSQILASDKDSLANSWDLFKADYKVVVSYATKYSVDLTTANSYYTPLENSIEKDILVDRTSNSPAGAYTSNIKGLQSALDKVIPNIISSALNSVITAQNTLATNTSSYRNLLLGTTTNISATGDQKLYSLSNGASQISGSTILSFTFNTTDVNSNFSINEVILNNDGSINKEVVLIDNLPNNMTNNVVSSFIQPIVPTLNQKADIYIRFSSYRQPVQISNMIMATSNNTKVTWVAAPEDISSTTTDKLATFKITDDQITSAVFDHLLEQSDVFTQTAEKAQIAVTQGDVSAGLSIEAGKMVWFGKEIDILGDIVDNNKITGAQFVDTSWSSTTGNFSITNTGVTTGMSLNSSTITNTTFNLSASGEIIGNYSIADSTTSNIPIKSSGKSIEDNSGIKSSGSKQSYINGSWSGYDDSLNLSSSVSNKEVSNISPSYLEYKILNTSGNNLMDTKVSSDGVYLSDISNSIKYTSKGISANKTLSIESPAISSKGIYNNTSSASANLTIDDSGIIHRVSSSEKYKKNISPIDDIIDKGKALLTITPKKWQDKNNDKDTQVGLIAEDLEKVGLSDFLFYKDGKPEGIQYDRLFILLMPLIKNILEENNG
Physico‐chemical
properties
protein length:1169 AA
molecular weight: 126975,39400 Da
isoelectric point:4,67219
aromaticity:0,08041
hydropathy:-0,38050

Domains

Domains [InterPro]
DC_0015
STR
1–569
DC_0015 DC_1985
IPR030392
CHP
1081–1131
IPR030392
IPR030392
CHP
1081–1169
IPR030392
YP_009844292.1
1 1169
Architecture
STR
RBD
STR 1-569 | RBD 946-1169
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage SAC12B
[NCBI] 		2510941 Uroviricota > Caudoviricetes > Herelleviridae > Tybeckvirus SAC12B >
Host Lactobacillus brevis
[NCBI] 		1580 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009844292.1 [NCBI]
Genbank nucleotide accession
NC_048754.1 [NCBI]
CDS location
range 84829 -> 88338
strand +
CDS
ATGGCTAAGCAAAAGGGGGATATCCGTAGACAAGCCTCTTTAGGAACAGAATTAAAAAGAAATATAAACAATAATAATTCAACTTCTGATCTAGTATTAGCTAGAGTTTCTAAGGTAGACTATGAGAATAATAGTATTGAATATATTGTACAAACAAATGGTATGAATAACAGCTCGGGAGCTATATCCAATGGAGGCGCCAGACTTCCTGTTTCCTTTGGTGGTAAAAATGGCTATGGAAATCCTTATGGATCAGTTAATACGATTAGGGTTAATGATATTGTCTTAATTGGCTTTGTTGGGGGTAAAAAGAATTCCCCTATTGTAATAAGCAAATATTTGTCTGACGAAGATGCCTATATGCTATCCGATTATTCAGGGGACCAATATATGGCTCCTAATGATGAAGATATGTATGATAAAACTAATTCATATAGAGATTTATATCCTGATTTAACTTACTCCTATCATAATGGTAATGGATATTATGAGCATACTTTTAGTGGAAATAGCTTCCTAGTAATGGATGATTATGATATTAAGGGCAATTTTGTAGACTATCCAGTAGGCGAGGTTGATGCTTCTACTTACTACTCATTACGGGGAAATAAATATAAAGATGGAACAAACTTTGACACTTTAAATTATCTAGCTCCAAACATATTTTTTAAACATCAAGGAAGCTATCTATTAGATGATAACGGAGAAGAAAAACTAGATCATCATCAAACAAATGTTTCTATATCACCCCAAGGAACGACTAGACTAACTACTTTTCATGATGATGATAAATGGCTATCGTTGTTTTCTATAGATGGAGATAATGGGGAAATAAGTCTTACTAGAGAAAATGATAACTCTATCAATATTGGGGATACTTCTGATAGTAATGCCACATTTACAATTGATAAAGACAATAATTTAATATTATCATCAGGTAATACAAAAATGACGCTTTCTGACGGTCATCATATTATTGCTAGCGACTTAGATACTGATTCAGATAAAATAGATCTTTATCAATCGGCTTTAAATAACAAGAATTCAATATCTGGTATAAACAATAGTATAAACTCTATTAATAATAATATGTCTTCTAGTTCCAGCTCATTATCTACTGTGAATGACCAAGTGAATATGTCAGCATCTTCTATTTCTCAAACAAATGCTATAGCTAGTTCAATTTACGGGAATGCAACTACTTCTGTAAATATGTTTTCTTTAGCAAGTTCTATTGCGAATACTGAAATAGATAGTAATACTGGATTCTACAAGGAAAATAATGGTAGCTTATCAACTCCCAAAATGGCGGCAATAAGAAACTTTAATTATATATTAACGGCTTACTCTGTTACTAGTCCAATTACTATAAAGATAGCCTTTTATGACTTAAATAAAAACTTTATAAATGAAAAAGAAGTTACAGGTAATTCAGGAGATATCTCTGTAACCGCGATTTCACCAGATAATGCTGTATATATTTCTGCAAGTGTAAGTAGTAACGCCTTTAAAGTAAAATTAGAGCAAGCAGATAAGGTTACTAGTTGGTCTCCATCAATTGTCGATTTATATACAAATAATAATACGGTATTAGAACTATTAAGTGCGGCTAAAATAGCACAAGCAGATACTAATGCCAAAATGTCTACGGTAACTAGCAACAATTATTTAAATAGTCTATTACAGTATAATAATGATTCACAAATATTAGCCAGTGATAAAGATTCTTTAGCTAATTCTTGGGACTTATTCAAAGCAGATTATAAAGTAGTAGTATCCTATGCTACTAAATACTCAGTAGACTTAACAACTGCCAATAGCTACTATACCCCTTTGGAAAATTCTATTGAAAAAGATATTCTGGTTGATAGAACGTCTAATAGCCCAGCAGGAGCTTATACAAGCAATATTAAAGGCCTTCAATCTGCACTTGATAAAGTTATACCTAATATAATTTCATCAGCCCTGAATAGTGTCATAACAGCTCAGAATACGCTTGCTACAAATACTAGCAGTTATAGAAATCTATTACTAGGAACCACTACAAATATTTCTGCAACTGGAGATCAGAAATTATACTCCTTATCAAACGGAGCTAGTCAAATATCTGGAAGTACTATACTATCTTTTACTTTTAATACTACTGATGTTAATAGCAATTTTTCTATTAATGAGGTTATTCTAAACAATGATGGATCTATTAATAAAGAAGTTGTTTTAATTGATAATCTTCCAAACAATATGACTAATAATGTTGTTTCTAGCTTTATACAGCCTATTGTGCCTACTTTAAATCAAAAGGCGGACATTTATATAAGGTTCTCTTCTTATAGGCAACCTGTTCAAATTTCTAATATGATTATGGCAACATCAAATAATACTAAAGTAACATGGGTTGCGGCTCCTGAAGATATTTCTAGCACTACTACAGACAAACTAGCTACCTTTAAAATTACCGATGACCAAATTACTAGCGCTGTATTTGACCATCTTCTAGAACAGTCTGATGTATTTACACAAACGGCTGAAAAGGCTCAAATCGCCGTCACCCAAGGAGATGTTTCTGCGGGATTATCAATTGAAGCAGGTAAGATGGTTTGGTTTGGTAAAGAAATAGATATTTTGGGAGATATTGTTGATAACAATAAAATAACAGGAGCTCAATTTGTAGATACTTCTTGGTCTTCTACTACTGGAAACTTTAGTATTACTAATACTGGGGTAACTACTGGCATGTCGTTAAATAGTTCAACAATAACTAACACAACTTTTAACTTATCTGCATCTGGGGAAATAATTGGCAACTATAGCATAGCAGATAGTACTACTTCTAATATTCCTATTAAGTCTTCCGGTAAGTCAATAGAAGATAACTCTGGTATTAAATCTTCTGGCAGTAAACAATCATATATTAATGGATCATGGTCTGGATATGATGATAGTTTAAACTTATCAAGTTCCGTTAGCAACAAGGAAGTATCCAATATTTCTCCTAGCTATTTAGAATATAAAATACTAAATACCTCGGGCAACAATTTGATGGATACCAAAGTATCTAGTGATGGTGTATATTTAAGTGATATTAGTAATTCTATTAAATATACCAGTAAAGGGATATCTGCAAATAAGACATTATCAATAGAGTCTCCTGCTATTTCTAGCAAGGGAATATATAATAATACTTCTAGTGCTTCTGCAAACTTAACTATAGATGATTCTGGAATAATTCATAGAGTATCATCTTCTGAAAAGTATAAAAAGAATATTTCACCAATTGATGATATAATAGATAAAGGTAAAGCACTATTAACTATTACACCTAAGAAATGGCAAGATAAAAATAATGATAAAGATACCCAAGTAGGATTGATTGCCGAGGACTTAGAAAAAGTAGGATTATCTGATTTCTTATTTTATAAAGATGGTAAACCCGAAGGAATTCAATATGACCGACTATTCATTCTTTTAATGCCATTAATCAAAAATATTTTGGAGGAAAACAATGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3ab48bcadb73fe466ec652dfacd44f208855467a8c90edbd2dce39be818695fc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6003
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of virulent Lactobacillus brevis phages Feyereisen,M., Mahony,J., O'Sullivan,T. and van Sinderen,D. 2019-04-26 — GenBank