Protein

View in Explore
Genbank accession
QDJ96413.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MSNPSFRYQVYYTDEDKTPIVVPRSSVVTTAGDIVFIGKNRLEYGEVFNTNIVHLLEHFAAREDADKPNTPDLSQVYVPQLSKPTVGQIWYNKTTNTPHAWNGAVWMALAQNDTVAGNSGVIAHGQQLPRPVSSIDGYVYPYSECSWVVSPFGFAEPQRIIFLSCYTDSNARVFTQYRRAGSPTLFNGLANYQIIGIRDTRNHGVPFPTPNIPGLTPTPTFTPTLTPTKTPSVTGSPTPTLTRTPGQTRSATPTPTVTRSGTPVPSQTRSVTPTPTPTPTITPTITPSRPAPITVDLSNQTVARTTGVGSTLKVGYSILNTQLVVVYDSNGFNIPTRWLINDDPANYSVRATRVSGNVTPTGFLDTWLNCSINRTWEIQNSSTSPGTYTLTLNVQVRRDADNFVMGNGVIVLQVTVQ
Physico‐chemical
properties
protein length:417 AA
molecular weight: 45512,53160 Da
isoelectric point:9,06214
aromaticity:0,08873
hydropathy:-0,29185

Domains

Domains [InterPro]
DC_1111
ATT
11–140
DC_1111
DC_1686
STR
110–417
DC_1686
QDJ96413.1
1 417
Architecture
ATT
STR
ATT 11-140 | STR 141-417
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Xoo-sp13
[NCBI] 		2591401 No lineage information
Host Xanthomonas oryzae pv. oryzae
[NCBI] 		64187 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas oryzae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDJ96413.1 [NCBI]
Genbank nucleotide accession
MN047793.1 [NCBI]
CDS location
range 138893 -> 140146
strand -
CDS
ATGAGTAATCCGAGCTTTCGCTACCAAGTTTATTACACAGACGAAGATAAAACCCCAATCGTCGTGCCCCGGTCATCGGTAGTTACCACTGCCGGTGATATCGTGTTTATTGGTAAAAACCGCCTGGAGTATGGTGAAGTATTCAATACTAACATCGTTCATCTGCTTGAGCACTTTGCTGCACGAGAAGACGCAGATAAGCCTAATACTCCAGATTTGTCCCAAGTGTATGTACCACAATTGTCTAAGCCGACGGTAGGTCAGATTTGGTATAATAAAACTACGAACACTCCACATGCATGGAATGGTGCTGTATGGATGGCTCTTGCACAGAATGACACAGTAGCTGGGAATTCTGGTGTTATTGCTCACGGTCAACAATTACCACGACCAGTAAGTTCTATTGACGGTTACGTGTACCCATATTCTGAATGTTCGTGGGTAGTTTCCCCATTCGGATTTGCCGAACCTCAACGCATTATATTTCTTTCATGTTATACCGATTCTAATGCTAGGGTATTCACTCAATATAGACGTGCTGGAAGTCCAACACTCTTTAACGGCTTAGCCAATTATCAGATTATTGGAATTAGAGACACCCGTAATCATGGCGTTCCGTTCCCGACCCCAAATATTCCGGGATTAACCCCAACGCCTACGTTTACTCCAACGTTGACCCCAACAAAGACGCCATCGGTTACAGGGTCCCCAACACCCACACTAACGAGGACACCCGGACAGACCCGTAGTGCCACACCAACACCAACGGTAACCCGTAGTGGGACACCTGTGCCGTCACAGACCCGATCAGTAACACCGACACCGACCCCAACACCAACGATCACCCCAACCATTACACCAAGTCGTCCAGCACCTATTACAGTTGATTTAAGTAATCAAACTGTGGCACGTACCACGGGGGTAGGGTCTACTCTCAAGGTAGGATATTCTATTTTAAATACTCAGCTTGTGGTAGTATACGATTCGAATGGGTTTAACATTCCTACCCGATGGTTGATCAATGATGACCCGGCAAATTATTCAGTTAGAGCGACCCGCGTATCAGGTAATGTAACTCCTACAGGGTTTTTGGATACATGGCTAAATTGTTCAATCAATAGAACGTGGGAGATTCAAAACTCTTCAACGTCCCCAGGAACGTATACATTAACCCTTAATGTACAAGTGCGACGCGACGCGGATAATTTCGTTATGGGTAACGGTGTGATTGTGTTACAAGTAACCGTTCAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bc5a0400fea3c8f69fce2be228d376923e1fe72c36b2e08b2ef6a8553d3a7857
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5420
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and genome sequence analysis of a novel phage Xoo-sp13 that infects Xanthomonas oryzae pv. oryzae Nazir,A., Dong,Z., Liu,J., Tong,Y. and Peng,D. 2021-02-14 — GenBank