Phage RBP Database

Genbank accession

AKO61608.1 [GenBank]

Protein name

hypothetical protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect2

Probability 0,70

Seq2Symm

C1 confidence 0,998

C1	0,998
C2	0,011
C3	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MHNRWSRHPGVKVYAFRTGQWGAPASGISDFEGKWRIEGLVDDVPYDVAFVHPDGQWEGKMSSRRMPIFDPFADPYWEDTTLLVHFDDVAGQTPTNERGITGFRIGGTGALIADTAPTPKFGTGALNINNGATAAGCWFGTGASTGIVADTNPMYMGSTDNFTVEGWFYCRSGVATNTYRDICILAANDKGIVINGSSQIVYYDGGIKIQGPSMTDLYDKWVWLVVQRENGITGMWLDGQRIGTFGDTGVKNAFRIGSNTQASEQFFGGLDEWRHTRAARYPGSPVTIQVPTAPFTPGNPIRSDSFTVPRLWNYEQTFGSATWTITSGRLNVDQSTSSTVFVRRDFSSQNLFCEAEIFQAQDSGFVWRYIDTSNYYLMSLMDDQAPLEPNTLKIYKRVNDAYTQIGSTTPITLTRGTANKVRMEMTGSTITVLINGTPVGSFTDTSIAVSGRMGFKAAAGSGYNGQLSVDNFKWDTLL

Physico‐chemical properties

protein length:	478 AA
molecular weight:	52522,04480 Da
isoelectric point:	5,36625
aromaticity:	0,12134
hydropathy:	-0,29477

Domain architecture

AKO61608.1

1 478 aa

STR 136–286 · RBD 312–473 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR013320
STR

IPR013320 G3DSA:2.60.120.560

IPR013320
STR

IPR013320

G3DSA:2.60.120.200
STR

G3DSA:2.60.120.200

AKO61608.1

1478 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0826
ATT

DC_0826 DC_0966

AKO61608.1

1478 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR013320	STR	IPR013320	136	275	Merged direct domain	Concanavalin A-like lectin/glucanase domain superfamily	Central	Low	Positional only	237 proteins / 237 hits
IPR013320	STR	IPR013320	136	280	Merged direct domain	Concanavalin A-like lectin/glucanase domain superfamily	Central	Low	Positional only	237 proteins / 237 hits
G3DSA:2.60.120.200	STR	G3DSA:2.60.120.200	141	286	Merged direct domain	G3DSA:2.60.120.200	Central	Low	Positional only	153 proteins / 153 hits
G3DSA:2.60.120.560	RBD	G3DSA:2.60.120.560	312	473	Merged direct domain	G3DSA:2.60.120.560	C-terminal	Low	Positional only	30 proteins / 30 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AKO61608.1

1 478 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	95	95	0,7838
Central domain	96	300	206	0,5584
C-terminal	301	478	177	0,9198

Note: Constraints were applied during segmentation.
Fixed 32 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Stenotrophomonas phage IME-SM1 [NCBI] · taxon 1654717

Uroviricota Caudoviricetes Menderavirus Menderavirus IMESM1

Host

Stenotrophomonas sp. [NCBI] · taxon 69392

Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp.

No CDS data available.

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)