Protein

View in Explore
Genbank accession
BBO65963.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
TSP
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
Protein sequence
MSSGCGDVLSLNDLQIAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGINDANKAVLWPKEDGGDGNYYVWRGSLPKVIPAASTPLTTGGISDSAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSILIDRDYNFSNNETVNFGGKTLTIDCKAKFIGDGSLVFTQLGRGSVIVGAYMESVTTPWVIKPWTDDNQWITDPAAIVATLKQSKTDGYQPTVNDYAKFPGIESLLPPEAKGQSISSTLEIRECTGVEVHRASGLMACFLFRGCHFCKMVDADNPSGGAHGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFARDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSAVLYPVWDGFDLGADTDMNPEDDRPGDFPISRYPVHMLPLNHLIDNLFVRGSLGVGFGMDGQGLYVSNITVEDCAGSGAYILAHETVFTNIAIIDTNTKNFPANQIYISGACRVNGLRLVGIRSTTEQSMTIDAPNSTVSGITGFVDPSRINVANLVEEGLGNSRINSFNNDSAALRFRIHKLSKTLDSGSVYSHINGGPGSDSAWTEITAIAGSLPDAVSLKINRGDYRAVEIPVSMTVLPDNAVRDNGSISLYLEGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 73087,87280 Da
isoelectric point:5,16095
aromaticity:0,08918
hydropathy:-0,15950

Domains

Domains [InterPro]
G3DSA:2.10.10.80
65–135
G3DSA:2.10.10.80 IPR011050
IPR040775
71–132
IPR040775 IPR012332
IPR015331
138–684
IPR015331
BBO65963.1
1 684
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_StyS-sam
[NCBI] 		2664131 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BBO65963.1 [NCBI]
Genbank nucleotide accession
LC507823.1 [NCBI]
CDS location
range 5169 -> 7223
strand -
CDS
ATGTCCAGCGGTTGCGGTGATGTATTGTCACTTAATGATTTACAGATAGCTAAAAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGCAAACAGGGTGGTGTAGCTGGCGGCGCAGATATCGACTACGCCACTAACCAGGTAACAGGGCAGACGCAGAAGACGCTGCCAGCGGTCTTACGTGACGCCGGTTTCTCTCCGGCATCTTTTAACTTCACAACCGGCGGAACCCTGGGAATTAACGACGCCAATAAAGCGGTTCTTTGGCCGAAAGAAGACGGCGGAGACGGTAACTATTACGTATGGCGCGGGTCACTCCCTAAAGTTATCCCTGCGGCGTCGACACCTCTTACGACGGGCGGCATTTCGGATTCCGCTTGGGTCGCGTTCGGGGATATCACCTTTCGCGCAGAAGCGGATAAGAAATTTAAATACTCCGTTAAGTTGTCGGATTTTACCACTTTACAGCAATTAGCTGATGCTGCCGTCGACAGTATTCTTATCGACCGTGACTACAATTTCAGCAATAACGAAACCGTTAATTTCGGCGGTAAGACCCTAACCATCGACTGTAAAGCGAAATTTATTGGCGACGGTAGCCTTGTTTTTACACAACTTGGTAGAGGGTCTGTTATAGTTGGTGCTTATATGGAGAGTGTCACAACGCCGTGGGTGATTAAACCGTGGACTGACGATAATCAGTGGATAACCGACCCCGCGGCAATCGTGGCCACACTTAAACAGTCTAAAACAGATGGATACCAGCCGACGGTAAACGATTACGCCAAGTTCCCTGGCATAGAATCCCTTCTCCCTCCGGAAGCTAAAGGGCAAAGCATATCTTCTACCCTGGAAATTCGGGAATGTACAGGCGTCGAGGTTCACCGGGCGAGTGGTCTTATGGCGTGTTTCCTGTTCCGTGGATGCCATTTCTGTAAGATGGTAGACGCTGACAACCCGAGCGGCGGTGCACACGGCGTAATCACCTTCGAAAACTTAAGCGGAGATTGGGGCAAAGGTAACTATGTTATCGGTGGGCGCACAAGTTACGGTTCGGTAAGTAGCGCGCAATTCTTACGCAACAATGGCGGTTTCGCGCGCGATGGCGGGGTCATCGGGTTTACCTCGTATCGTGCAGGGGAAAGTGGTGTTAAGACGTGGCAAGGTACGGTAGGTTCTACGACATCTCGTAACTACAACCTGCAATTCCGGGATTCGGCGGTACTGTACCCTGTATGGGACGGCTTCGATTTAGGCGCAGATACTGACATGAACCCCGAAGACGACCGCCCAGGGGATTTCCCCATTTCTCGGTACCCGGTACATATGCTCCCTTTAAACCATTTGATAGACAATCTATTTGTTAGAGGTTCGCTGGGGGTAGGATTCGGTATGGACGGGCAAGGTCTGTATGTCTCTAATATAACCGTCGAGGATTGCGCTGGTTCTGGGGCTTATATTCTTGCCCACGAAACAGTATTCACTAATATCGCAATAATCGACACCAATACTAAAAACTTCCCCGCGAACCAGATATATATCTCGGGGGCCTGTCGTGTAAACGGCCTTCGTTTGGTAGGCATCCGTTCAACTACCGAACAGAGCATGACGATAGACGCACCTAACTCCACTGTAAGCGGAATAACGGGCTTCGTGGACCCCTCAAGGATTAACGTAGCCAATTTGGTGGAGGAAGGTCTTGGTAACTCTCGCATAAACAGTTTCAATAATGATTCTGCGGCGCTTCGGTTTCGTATTCATAAACTGTCAAAAACCCTTGATAGTGGGTCCGTGTACTCCCACATTAACGGCGGGCCAGGTTCTGATTCAGCATGGACCGAAATTACCGCTATTGCGGGGAGCTTGCCCGATGCCGTGTCATTAAAAATAAATAGGGGCGATTATCGTGCTGTTGAGATACCGGTATCGATGACCGTCCTACCAGACAACGCTGTCAGGGATAACGGGTCTATATCACTGTATCTGGAGGGTGATAGCCTTAAAGCGTTAGTTAAGCGGGCCGACGGAAGCTATACAAGATTAACTTTGGCATAA

Tertiary structure

PDB ID
09661af170f7ea31f126103682e07fd957df4321eaa28f34c68ad9a95a2b493c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6842
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Analysis of Salmonella phage vB_StyS-sam Sabzali,S. and Bouzari,M. 2022-09-23 — GenBank