Protein

View in Explore
Genbank accession
WKV24243.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MANTTLTQFPAGQSQYRITFDYLSRQFVVVTLINSNDVTQNRVLKAGDDYRFLNATTLEILASQTGFDIIQINRFTSTDLLVKFRDGSVLTAGDLTNAELQAIHISEEGRDQTTGLAMQYAEQAVAAGKEAEEILNQIILLGKNGYTPVGSFESGGTVTLQNDVLQYGSGTSLTHWRWEGSLPKVVPAGSTPTSAGGIGKGKWVDVTDATLRGQLKSETGSQLVTYKMHKVAGSVMRSLEDRLAQSGSVLDFGADPTGMTDSSDAFQKAIDLLPHVFVPQGIYRIDKSLVAKRSVTISGEGNTGQINRLMSFINMNGNIPFIRNWQEVAQPNSMFQLHVKRLFIQYNPVSRPEMSNWQGHSGKVAFLFESTTPEANGLEFSSFEDIVVLGAWQFMKDTTGTYMTRVTRCEARQCRIGIQKATGTTILLEHFYANGCRLAYSFGAMSTLKMVCCAMDNTAISIAGSGQGIAYGMEINGVRSFSIDVFDAEVNRVSTDGGDIASLIRITDSVGEISRFTGLRNDLVTEGAAEGGSVALFHLLNNSRVRFTDCEGEFFRAEAPPYTGSGYAVTLLTDTTSEAYVTNSRFKAPAKKTGTTGTPLALVLAQGNVTFGFGCDISGPRSGGTRLYASGGTLFSDSFATARASTPVGANNPTPIITLSAPGAYMVFAHVAGSGKEYMASAQVIYDGTASAIFKMVDGAFLEITAAGAVISLVSTGATTVTWSYIKL
Physico‐chemical
properties
protein length:728 AA
molecular weight: 78106,25280 Da
isoelectric point:5,73013
aromaticity:0,08929
hydropathy:-0,03805

Domains

Domains [InterPro]
DC_0369
STR
1–727
DC_0369
IPR005604
ATT
13–114
IPR005604 G3DSA:2.10.10.80 IPR012334
IPR040775
RBD
150–208
IPR040775 IPR011050
IPR024535
ENZ
248–358
IPR024535
WKV24243.1
1 728
Architecture
STR
ATT
STR
ATT
STR
STR 1-12 | ATT 13-114 | STR 115-145 | ATT 146-206 | STR 207-727 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WKV24243.1
1 728
Domain Start End Length (AA) Confidence
N-terminal 1 261 261 0,9940
Central domain 262 622 362 0,9930
C-terminal 623 728 105 0,9595
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-261
Central
262-622
C-terminal
623-728

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage LET1
[NCBI] 		3061288 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium sp.
[NCBI] 		1913084 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WKV24243.1 [NCBI]
Genbank nucleotide accession
OQ939567 [NCBI]
CDS location
range 33054 -> 35240
strand +
CDS
ATGGCTAACACTACGCTGACTCAGTTTCCTGCTGGTCAGTCTCAATATCGGATTACTTTTGACTACCTGTCTCGACAATTCGTTGTCGTCACGCTGATTAATAGTAATGACGTAACTCAAAACCGTGTGCTGAAAGCTGGGGATGACTATCGGTTCCTTAACGCCACGACTTTGGAAATCCTCGCGTCTCAGACCGGATTCGATATCATCCAGATTAACCGCTTCACGTCTACAGACCTCCTGGTAAAGTTTAGAGACGGTTCGGTCCTGACTGCTGGTGACCTGACAAACGCTGAGCTTCAGGCAATCCATATTTCTGAGGAAGGTCGAGACCAGACTACAGGTCTAGCTATGCAGTACGCGGAGCAGGCAGTAGCAGCGGGTAAAGAGGCTGAGGAGATTCTTAACCAAATTATCCTTCTGGGTAAAAACGGGTACACCCCTGTTGGGTCCTTTGAGTCCGGCGGCACTGTGACGTTACAGAATGACGTTTTGCAGTACGGCTCAGGAACCTCTCTGACTCATTGGCGCTGGGAGGGCTCTCTACCTAAAGTCGTTCCTGCTGGCTCAACTCCTACGTCCGCTGGCGGTATCGGGAAGGGTAAGTGGGTAGACGTCACGGATGCGACTCTGCGTGGGCAGCTTAAAAGCGAGACTGGCTCTCAGCTGGTGACCTATAAGATGCACAAGGTCGCGGGTTCGGTGATGCGTTCGCTTGAGGACCGACTAGCTCAGTCAGGAAGCGTCCTGGACTTTGGTGCTGACCCAACGGGGATGACTGACTCGTCTGATGCTTTCCAGAAGGCAATCGACCTACTGCCACACGTCTTCGTACCTCAAGGCATCTACCGCATCGATAAGTCGCTGGTGGCTAAGCGTAGCGTGACCATCTCTGGCGAAGGTAACACCGGGCAGATTAACCGACTCATGTCGTTCATCAACATGAATGGCAACATCCCGTTCATCCGTAACTGGCAGGAAGTAGCACAGCCTAACAGCATGTTCCAGCTCCACGTCAAGCGTCTGTTCATTCAGTACAACCCGGTGTCACGACCGGAGATGTCAAACTGGCAGGGGCACAGCGGTAAGGTGGCGTTCCTCTTTGAGTCCACAACCCCTGAGGCTAACGGACTGGAGTTCTCGTCCTTTGAGGATATCGTGGTGCTGGGTGCCTGGCAGTTCATGAAGGATACCACTGGTACTTATATGACTCGCGTGACTCGCTGTGAAGCCCGTCAGTGCCGCATTGGTATTCAGAAGGCGACCGGGACTACAATCCTTCTGGAGCACTTCTACGCAAACGGGTGTCGACTTGCTTACTCATTTGGTGCTATGTCCACCCTTAAGATGGTGTGCTGCGCGATGGATAACACGGCCATCTCTATCGCTGGGTCTGGACAGGGGATTGCCTATGGTATGGAAATCAACGGTGTTCGTAGCTTCAGTATCGACGTCTTTGACGCTGAGGTAAACCGTGTGTCGACCGACGGTGGCGACATCGCATCTCTGATTCGAATCACTGATAGCGTTGGTGAAATCTCTCGGTTTACTGGTCTGCGTAACGACCTGGTAACTGAAGGTGCTGCTGAGGGTGGTAGCGTGGCTCTGTTCCACCTGCTCAACAACTCCCGCGTCCGGTTCACAGACTGTGAGGGAGAGTTCTTCCGTGCTGAAGCTCCGCCTTACACTGGTAGTGGCTACGCTGTTACCCTCCTGACGGACACTACGTCTGAGGCTTACGTCACCAACTCCCGGTTCAAGGCTCCCGCCAAGAAGACAGGGACCACTGGTACACCTCTCGCGCTGGTTCTGGCCCAGGGTAACGTGACCTTCGGTTTTGGCTGTGACATCTCCGGTCCTCGCTCTGGTGGTACTCGCCTGTATGCTTCCGGTGGGACTCTGTTCTCCGATAGCTTTGCGACCGCACGGGCTTCAACCCCGGTAGGTGCGAACAACCCGACTCCTATAATCACCTTGAGTGCGCCAGGTGCCTACATGGTGTTTGCTCACGTTGCGGGCAGCGGTAAGGAGTATATGGCCTCGGCCCAGGTAATCTACGATGGTACTGCGTCTGCTATCTTCAAGATGGTCGATGGTGCCTTCCTGGAAATCACGGCTGCGGGTGCTGTAATCTCTCTGGTCTCAACCGGAGCGACTACGGTCACCTGGTCTTACATTAAGCTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
59bfaf5da44073c5fae0b6bf9e1b14f512e362a0e97b6cc0e39c2b8360cb7c31
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8041
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phenotypic Characterization and Complete Genome Analysis of a Novel Lytic Phage Infecting Pectobacterium sp. Itang,L.G.C., Silva,B.B.I., Bautista,M.J.A., Baybay,Z.K., Montecillo,A.D. and Encabo,J.R. 2025-06-27 — GenBank