Protein

View in Explore
Genbank accession
YP_004324868.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,66
Protein sequence
MALTRLKNIITSRTGRIIYVNPDDFDASDAIDNRGNSALRPFKTIQRAFLEVAKFSYRVGLSNDEFDAFSIMLYPSEYVIDNRPGEVLYTNVPPIDSNSNLDITSSSNVLYKYNSIEGGVIVPRGCSLVGTDLRRTKIIPKYVPYPTTYAAKGINTEADIPSRSALFKVTGGTYFWQFSFFDGAEEGVYYKPDSTDTLAPKFSHHRLTCFEFADGLNPLSTLIANGTVPNSDYTAVANIQERTDLEIYYQKISKAFAAVPDTSGDPDTDQIQARVEENRIVGPISDEYRVLQITRNGQTATAVTVDEFDNPRDHGFSVGVNINISGVTGSTGPSSEADAGVYNGSFTVTSASGNVFTYQMQSEPTGNAVGSNITVKTEIDTVDSASPYAFNLSLRSVWGMNGMHADGAKATGFKSMVVAQFTGLSLQKDDRAFVRYNASTGNYDVATAGDGAHLDGFAEYRKGWGHEHIKCSNDAFIQAVSVFAVGYYAHFSAIGGADMSITNSNSNFGNTALRSAGFKAKSFSKDKAATITHIIPPKALSVISTTATGTAAATTITLADDGSVNGLVQGTAVSGTGIAGGATIVSFNTNTRVVTLSAANTGTVSGNVIFGQETSVNWVNLDIQRTKVINQALASGGGTPGTRLYLYGYTVEASPPTSKVQGFTVGARQDGTGGSAVPDKLNCLLVASGASEATVQTATISPYGPSVSGKSPGTVGSPLQYDSGTYTIGGVAGTVGGWYITVSDTDNNIYTAINTNTQYNNVSFTPTTFIKRISDGRDLQDRTYRVRFVIDKDKANPLPRDPLSGYVMQPLNTDTTSYSLSKCYYVYDIEVVQPFVRGVDDGIYYITLLCGSIAPTTSNFNDRKFSQNVNEVYPTFDRDNPVADPDAAVSVADNEVIGLVNATDGATPTPAKDPKLSVTKEGIQFLLADNGWTQPGTTPGWDAVNKELSDVELTARAGDEEVRKINIRENNDGSVAPIPVEFRRHSILRSGNHTFEYLGFGPGNYSTAFPQTQVETLDANQIKFSQSIKEEAGVAFYSGLNSNGDLFIGNQVINPVTGQITNEDIAQLNVIGEENTTIETFSEIVLTDKLTVIGGASNQLESIFAGPVTFQGQVSSTDNLIAKKLTYNNQDGTVIKQTLLAPEDANGNPDFNNVIGYDTPGDGDLVYNINWTPGKSLGWIYYSATWHQFGLTDTGDINIATFSNEQHLGIGKVATTDYRVDVLGSVKVDGDLVVTGQGGVSAANYNTREYNGDGTQLTFAITTYSGSIKHTANSVLVFLNGVAQVGGTDYTVDGTGANVVFAAGSAPLASDDVHIVEMPI
Physico‐chemical
properties
protein length:1320 AA
molecular weight: 141016,26420 Da
isoelectric point:4,73284
aromaticity:0,09318
hydropathy:-0,21780

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_004324868.1
1 1320 aa
Domain Start End Length (AA) Confidence
N-terminal 1 83 83 0,9670
Central domain 84 311 229 0,9650
C-terminal 312 1320 1008 0,1855
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Prochlorococcus phage P-SSM7 [NCBI] · taxon 445688
Uroviricota Caudoviricetes Pantevenvirales Palaemonvirus Palaemonvirus pssm7
Host
Prochlorococcus marinus str. NATL1A [NCBI] · taxon 167555
Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus

Coding sequence (CDS)

Genbank protein accession
YP_004324868.1 [NCBI]
Genbank nucleotide accession
NC_015290 [NCBI]
CDS location
range 26138 -> 30100
strand +
CDS
ATGGCACTCACCAGGTTAAAGAATATTATTACGTCCAGAACTGGACGTATCATATATGTCAACCCAGATGACTTCGATGCTTCTGATGCTATTGACAATAGAGGAAACTCAGCACTGCGACCTTTTAAAACTATTCAAAGAGCGTTTCTAGAAGTTGCTAAATTTTCATATAGAGTTGGTTTAAGTAATGACGAGTTTGATGCTTTCAGTATCATGCTCTATCCATCTGAATATGTTATTGATAATCGTCCTGGTGAGGTTCTTTATACTAATGTTCCCCCTATTGATTCAAACTCAAACTTAGACATCACATCATCTAGTAATGTACTATACAAATACAACTCCATTGAAGGTGGTGTCATTGTACCTAGAGGTTGTTCTCTTGTTGGTACTGACCTTAGAAGAACTAAAATAATTCCAAAGTATGTACCTTATCCAACAACGTATGCTGCGAAAGGTATTAACACTGAAGCAGACATTCCTTCTCGTTCAGCATTATTTAAAGTAACTGGTGGTACTTACTTCTGGCAATTCTCATTCTTTGATGGTGCAGAGGAAGGTGTGTACTATAAACCTGATAGTACGGATACTTTAGCACCTAAGTTCTCACATCATAGACTTACATGTTTTGAGTTTGCTGATGGTTTAAATCCATTATCAACTCTTATTGCAAATGGTACAGTTCCTAACTCAGATTATACTGCTGTTGCAAATATTCAAGAGAGAACTGATCTAGAAATTTATTATCAAAAAATATCAAAAGCATTTGCTGCTGTTCCTGATACATCTGGTGATCCTGATACTGACCAGATTCAGGCAAGAGTAGAAGAAAATCGTATTGTTGGTCCTATTTCTGATGAATATAGAGTCCTACAGATTACAAGAAACGGACAGACTGCTACTGCTGTTACTGTTGATGAATTTGATAACCCAAGAGATCATGGATTCTCTGTTGGTGTTAACATTAACATTAGTGGTGTTACTGGATCAACTGGTCCATCATCCGAAGCAGACGCAGGAGTTTATAACGGATCTTTCACGGTCACATCTGCATCTGGTAACGTCTTTACTTACCAAATGCAATCAGAACCAACAGGTAATGCTGTAGGTTCAAACATAACTGTTAAGACAGAAATTGATACAGTCGACTCTGCATCACCTTATGCTTTCAACCTATCACTAAGATCAGTGTGGGGTATGAACGGTATGCACGCTGACGGTGCAAAGGCAACTGGTTTCAAATCAATGGTTGTGGCACAGTTTACTGGATTGTCACTACAGAAGGATGACAGAGCATTTGTAAGATATAACGCATCAACTGGAAACTATGATGTAGCAACTGCTGGAGATGGTGCCCACTTAGATGGTTTTGCTGAATACCGTAAAGGATGGGGTCATGAGCATATTAAATGTAGTAATGACGCATTTATTCAGGCGGTCTCGGTGTTCGCTGTTGGATACTATGCTCACTTCTCTGCTATTGGTGGTGCTGACATGTCAATTACCAACAGTAACAGTAACTTTGGTAACACTGCATTAAGGTCTGCTGGATTTAAAGCAAAATCATTCTCAAAAGATAAAGCAGCAACGATTACTCACATCATACCACCTAAAGCGTTAAGTGTTATTTCAACAACTGCTACTGGTACTGCTGCTGCTACAACAATTACACTTGCTGATGATGGTTCGGTTAATGGACTTGTTCAGGGAACTGCAGTTAGTGGTACTGGTATTGCTGGTGGTGCAACAATCGTTTCTTTTAACACAAATACTAGAGTAGTTACTCTTTCAGCAGCAAATACTGGAACTGTTAGTGGTAATGTAATATTTGGTCAAGAAACTTCCGTCAACTGGGTAAACCTTGATATTCAAAGAACTAAAGTAATTAATCAGGCACTCGCAAGTGGTGGTGGAACACCTGGAACTAGACTTTACTTATATGGTTATACTGTTGAAGCATCTCCACCAACAAGTAAAGTACAAGGTTTCACAGTTGGTGCAAGACAAGATGGTACAGGTGGTAGTGCTGTACCTGATAAATTGAATTGTCTGTTAGTTGCTAGTGGTGCTAGTGAAGCAACTGTTCAAACAGCAACAATCTCTCCTTATGGACCTTCTGTCTCTGGTAAATCACCAGGCACTGTAGGTTCACCATTACAATATGATTCTGGTACATATACTATCGGTGGAGTAGCAGGTACTGTTGGTGGTTGGTATATAACTGTGTCGGATACTGATAATAATATCTACACAGCAATCAACACAAATACACAATATAATAATGTAAGTTTTACTCCTACAACTTTCATTAAAAGAATTTCTGATGGTAGGGATCTTCAAGATAGAACATATCGTGTTAGATTTGTAATCGATAAGGATAAGGCAAATCCATTACCAAGAGATCCTCTATCTGGTTATGTAATGCAACCTTTGAATACTGATACAACATCATATTCATTATCTAAGTGTTACTATGTGTATGACATTGAAGTAGTACAACCATTTGTTCGAGGTGTTGATGATGGTATCTATTATATAACTCTCCTATGTGGATCTATTGCACCCACAACTTCTAACTTTAATGATAGGAAGTTTAGTCAAAACGTCAACGAAGTCTATCCTACATTTGATAGAGACAACCCTGTTGCTGACCCTGATGCTGCTGTATCTGTTGCTGATAATGAAGTTATCGGTCTTGTAAATGCAACTGATGGTGCAACACCAACTCCTGCTAAAGATCCTAAGTTATCTGTTACTAAAGAAGGAATACAATTCTTACTTGCTGATAATGGATGGACTCAACCAGGTACAACTCCTGGATGGGATGCAGTTAATAAAGAACTTTCTGATGTTGAATTAACTGCTCGTGCTGGTGATGAAGAAGTTAGAAAAATTAATATTAGAGAAAATAATGATGGTTCTGTAGCACCTATTCCTGTTGAGTTTAGACGACACTCTATTCTAAGATCAGGTAACCATACGTTTGAGTATCTTGGTTTTGGTCCAGGTAACTATTCAACTGCGTTCCCTCAAACACAGGTTGAGACTCTAGATGCTAATCAAATTAAGTTCTCTCAGTCTATTAAGGAAGAAGCGGGTGTTGCTTTCTACTCTGGTCTTAACTCTAATGGTGACCTATTCATTGGTAACCAAGTTATTAACCCAGTTACAGGACAGATCACTAACGAGGATATTGCACAGTTGAATGTTATTGGTGAAGAAAACACAACTATCGAAACATTCTCTGAGATTGTTCTTACTGATAAACTCACAGTTATTGGTGGTGCATCTAACCAGTTAGAATCTATATTCGCTGGTCCTGTTACTTTCCAAGGTCAAGTATCATCTACTGACAATCTTATTGCAAAGAAATTAACTTATAATAATCAAGATGGTACTGTAATTAAACAAACATTACTAGCACCTGAAGATGCAAATGGAAATCCTGACTTTAATAATGTTATAGGATACGATACTCCTGGTGATGGTGACTTAGTTTATAATATTAACTGGACTCCAGGTAAATCACTAGGTTGGATATACTACAGTGCAACGTGGCATCAATTTGGTCTAACTGATACTGGAGATATTAATATTGCTACGTTCAGTAATGAACAGCATCTTGGTATTGGTAAGGTAGCAACTACTGATTATAGGGTTGATGTTCTTGGTAGTGTAAAAGTTGATGGTGACTTAGTTGTTACTGGACAAGGTGGTGTTTCTGCTGCCAACTATAATACTAGAGAATATAATGGTGATGGAACACAATTAACATTTGCAATAACAACATATTCTGGTTCTATTAAACATACAGCAAATTCTGTTCTAGTATTCTTGAATGGTGTTGCTCAGGTTGGTGGAACTGACTATACAGTTGATGGTACTGGTGCAAACGTTGTGTTTGCGGCAGGATCAGCACCACTTGCAAGTGATGATGTTCATATTGTAGAAATGCCTATCTAA

Genome Context

Tertiary structure

YP_004324868.1
ESMFold structure
Source ESMFold
pLDDT 37.7
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage NATL1A-15 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank