Protein

View in Explore
Genbank accession
XWX32788.1 [GenBank]
Protein name
glycerophosphoryl diester phosphodiesterase
RBP type
TSP
Evidence DepoScope
Probability 0,99
TSP
Evidence RBPdetect
Probability 0,78
Protein sequence
MTLRTQASLGKGLKEVEKDDFNLNNLFLATITKVNYKYQTVELRTKYTYAGRNIGSNGEFSAPFPKSFIGRTPEGALFGDNNIIVPGSIALVGFLEGDAGQPFIINVYGYPNDNKMLTPNPLESGDINNREIYKYGSMIHQIKPSLTYSYLDGEGTSIKSFNGKSFISITSQEDERPLATDFYTGTEYEDLYTSYYGDGSEVEPRNQISPNMLLKHRGEYTHDGEEDNHITTLHLTEKGAVRVSVMNTETQERTTQEMDENGNYRVIYQGDELILDEAQVWIEYGINKDTKSFYIKNEKQEFEFTDEGVLINGTPLIDNLDESLQEAFEKLKEIQEDLKDINNLLEGAGKENLEELIRTAKDSIEASGQASRDVEKLRGDISTVSGRVEGNIKKLDDYMKTMDDFVKDTNDFITEYTGSLDNVKRDVTTISNNENKYRHTTFRDIKIHADLPFKFQGYNEAISQNNATYYFPQGIARDDDYFYIVTRAPETGKMSLIVVWNANTFEYVTKFYAGNSGGEGIHVEKEGDKRYAYIKTSSNKLGKFDVTTLNSSIDGNTLQPLVEFDINMFMNFFRTKEGWAVEANNQTKGIYLQRDTLVFYNHDFSKRLGYLWIPPSNSTLWSNDLLGSVSNYSAKKQGMSMVNNTLIQTLGGNWLPTRDKELHTYHLQGVQEISPSGQIMNDYTYTPQELKTYLESKGKSVTMIEHEGAFTYNNRLYSVIVYAGRTTTQANTGGVLIVEYKPKEKDYTFNEPGIIFSAPTANYNPYKPNIDNKLINEYTGEEISDIKTLAKYMIDTFQDKIVFYTSKILGFKDFNGNDYPTGRKVIIENLNNNTFHLQDVGNYDDNFYVLTYNRTENAFNLYPRDRDVSNTNIDLLTLNYKVEGYFINAINSPEGVNSSGWVKTRNYGTNGRIEYNPIDSYDTYINIRNNNQWQGWKKITTVE
Physico‐chemical
properties
protein length:943 AA
molecular weight: 107674,23710 Da
isoelectric point:4,95553
aromaticity:0,11877
hydropathy:-0,66257

Domains

View on InterPro
Domain architecture
XWX32788.1
1 943 aa
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
XWX32788.1
1 943 aa
Domain Start End Length (AA) Confidence
N-terminal 1 438 438 0,7752
Central domain 439 702 265 0,8408
C-terminal 703 943 240 0,3120
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Staphylococcus phage PG-2021_33 [NCBI] · taxon 2815624
Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes
Host
Mammaliicoccus vitulinus [NCBI] · taxon 71237
cellular organisms Bacteria Bacillati Bacillota Bacilli Bacillales

Coding sequence (CDS)

Genbank protein accession
XWX32788.1 [NCBI]
Genbank nucleotide accession
MZ417330 [NCBI]
CDS location
range 72937 -> 75768
strand +
CDS
ATGACATTAAGAACTCAAGCATCTTTAGGTAAAGGGTTGAAGGAAGTAGAAAAGGATGACTTTAATCTGAATAATCTTTTTCTTGCTACCATCACAAAGGTAAATTATAAATACCAAACAGTAGAACTAAGAACAAAGTATACTTATGCAGGTAGAAATATAGGGTCTAACGGAGAGTTTTCTGCACCCTTCCCTAAATCATTTATAGGAAGAACACCTGAAGGAGCCCTATTTGGAGATAACAATATTATAGTACCAGGTTCTATTGCTCTAGTAGGATTCTTAGAAGGGGATGCAGGACAGCCTTTTATTATAAATGTTTATGGATACCCAAATGATAATAAGATGCTAACACCTAACCCTCTAGAGAGTGGAGACATAAATAATAGAGAAATCTATAAATATGGTAGTATGATTCATCAAATAAAGCCATCACTTACTTATAGTTACTTAGATGGTGAAGGTACAAGTATAAAATCTTTTAATGGTAAATCATTTATTTCAATAACATCACAGGAAGATGAGAGACCTCTAGCAACAGATTTTTATACAGGTACTGAATATGAAGATTTATATACTTCTTATTATGGTGATGGTTCAGAAGTAGAACCTAGAAATCAAATATCTCCTAATATGCTATTAAAGCACAGAGGAGAATATACACATGATGGTGAAGAAGATAACCATATAACTACCTTACATCTAACAGAAAAGGGAGCGGTAAGAGTATCAGTAATGAATACTGAAACACAAGAACGCACCACTCAAGAGATGGATGAAAATGGAAATTATAGAGTTATTTATCAAGGAGATGAATTAATTCTTGATGAAGCTCAAGTATGGATAGAGTATGGAATAAATAAAGATACTAAATCATTTTATATTAAAAATGAAAAGCAGGAATTTGAATTCACAGATGAAGGTGTACTTATTAATGGAACACCTTTAATAGATAACTTAGATGAAAGTTTACAAGAAGCATTTGAAAAACTTAAGGAGATACAAGAGGATTTAAAAGATATCAATAACTTACTAGAAGGAGCGGGTAAAGAGAACTTAGAAGAGTTAATAAGAACAGCTAAGGACTCTATTGAAGCATCTGGACAAGCTAGTAGAGATGTTGAGAAATTAAGAGGCGATATATCCACAGTATCCGGAAGAGTAGAAGGTAATATTAAAAAATTAGATGACTATATGAAAACAATGGATGATTTTGTAAAAGATACAAATGACTTTATAACAGAGTACACAGGGTCATTAGACAATGTTAAAAGAGATGTCACAACTATTTCCAATAACGAAAACAAGTATAGACATACAACATTTAGAGATATAAAAATACATGCAGATTTACCTTTTAAATTCCAAGGGTATAATGAGGCTATATCACAAAATAATGCAACCTATTATTTTCCACAGGGAATAGCAAGAGATGATGATTATTTCTATATAGTAACAAGGGCACCGGAAACAGGTAAAATGAGTTTGATAGTAGTATGGAACGCTAATACTTTTGAATATGTAACTAAGTTTTATGCAGGAAATTCCGGTGGTGAAGGTATACATGTAGAAAAAGAAGGAGACAAAAGATATGCATATATTAAGACTTCTTCTAATAAATTAGGAAAATTTGATGTAACAACTTTAAACTCTAGTATAGATGGGAACACTTTACAACCACTAGTAGAGTTTGATATAAATATGTTCATGAACTTCTTTAGAACAAAAGAAGGTTGGGCAGTAGAGGCTAATAACCAAACTAAGGGTATTTACTTACAAAGGGATACACTAGTATTTTATAATCATGATTTCTCTAAAAGATTAGGTTATTTATGGATACCACCTAGTAACTCTACTTTATGGTCTAATGACCTATTAGGTAGCGTATCTAATTATAGTGCTAAGAAACAAGGAATGTCTATGGTAAACAATACTCTTATACAAACTTTAGGTGGTAATTGGCTACCTACTAGAGATAAAGAGTTACACACTTATCACTTACAAGGGGTACAAGAAATAAGTCCTAGTGGTCAAATTATGAATGACTACACATATACACCACAAGAACTTAAGACATACTTAGAGAGTAAAGGTAAATCAGTAACTATGATAGAGCATGAGGGTGCTTTTACCTACAATAATAGGCTATACTCTGTTATTGTATATGCAGGAAGAACTACTACACAGGCTAATACCGGTGGTGTTCTTATTGTAGAATATAAACCTAAAGAAAAGGATTATACATTCAATGAACCAGGTATAATTTTTAGTGCTCCAACAGCTAACTATAATCCATATAAACCTAATATAGATAACAAACTTATTAATGAGTATACAGGTGAAGAAATATCGGATATTAAAACATTAGCTAAATATATGATTGATACATTCCAAGATAAAATAGTATTTTATACAAGTAAAATATTAGGTTTCAAGGACTTTAATGGTAATGACTATCCTACAGGTAGAAAAGTTATTATAGAAAACTTAAATAATAATACATTCCATTTACAAGATGTAGGTAACTATGATGATAATTTCTATGTACTAACTTATAACAGAACAGAAAATGCATTTAATTTGTATCCTAGAGATAGAGATGTAAGCAACACAAATATAGATTTATTAACTTTAAATTATAAAGTTGAAGGTTATTTTATAAATGCTATAAATTCACCTGAGGGTGTTAATTCCAGTGGTTGGGTGAAAACAAGAAACTATGGAACAAATGGGAGAATAGAATATAATCCTATAGATAGTTATGACACCTATATAAACATTAGAAACAATAATCAATGGCAAGGTTGGAAAAAAATAACAACGGTAGAGTAA

Genome Context

Tertiary structure

XWX32788.1
ColabFold structure
Source ColabFold
pLDDT 75.0
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank