Protein

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Genbank accession
XWX32788.1 [GenBank]
Protein name
glycerophosphoryl diester phosphodiesterase
RBP type
TSP
Evidence DepoScope
Probability 0,99
TSP
Evidence RBPdetect
Probability 0,78
Protein sequence
MTLRTQASLGKGLKEVEKDDFNLNNLFLATITKVNYKYQTVELRTKYTYAGRNIGSNGEFSAPFPKSFIGRTPEGALFGDNNIIVPGSIALVGFLEGDAGQPFIINVYGYPNDNKMLTPNPLESGDINNREIYKYGSMIHQIKPSLTYSYLDGEGTSIKSFNGKSFISITSQEDERPLATDFYTGTEYEDLYTSYYGDGSEVEPRNQISPNMLLKHRGEYTHDGEEDNHITTLHLTEKGAVRVSVMNTETQERTTQEMDENGNYRVIYQGDELILDEAQVWIEYGINKDTKSFYIKNEKQEFEFTDEGVLINGTPLIDNLDESLQEAFEKLKEIQEDLKDINNLLEGAGKENLEELIRTAKDSIEASGQASRDVEKLRGDISTVSGRVEGNIKKLDDYMKTMDDFVKDTNDFITEYTGSLDNVKRDVTTISNNENKYRHTTFRDIKIHADLPFKFQGYNEAISQNNATYYFPQGIARDDDYFYIVTRAPETGKMSLIVVWNANTFEYVTKFYAGNSGGEGIHVEKEGDKRYAYIKTSSNKLGKFDVTTLNSSIDGNTLQPLVEFDINMFMNFFRTKEGWAVEANNQTKGIYLQRDTLVFYNHDFSKRLGYLWIPPSNSTLWSNDLLGSVSNYSAKKQGMSMVNNTLIQTLGGNWLPTRDKELHTYHLQGVQEISPSGQIMNDYTYTPQELKTYLESKGKSVTMIEHEGAFTYNNRLYSVIVYAGRTTTQANTGGVLIVEYKPKEKDYTFNEPGIIFSAPTANYNPYKPNIDNKLINEYTGEEISDIKTLAKYMIDTFQDKIVFYTSKILGFKDFNGNDYPTGRKVIIENLNNNTFHLQDVGNYDDNFYVLTYNRTENAFNLYPRDRDVSNTNIDLLTLNYKVEGYFINAINSPEGVNSSGWVKTRNYGTNGRIEYNPIDSYDTYINIRNNNQWQGWKKITTVE
Physico‐chemical
properties
protein length:943 AA
molecular weight: 107674,23710 Da
isoelectric point:4,95553
aromaticity:0,11877
hydropathy:-0,66257

Domains

Domains [InterPro]
DC_0539
STR
275–942
DC_0539
Coil
Unmapped
317–351
Coil
XWX32788.1
1 943
Architecture
STR
STR 275-942 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XWX32788.1
1 943
Domain Start End Length (AA) Confidence
N-terminal 1 438 438 0,7752
Central domain 439 702 265 0,8408
C-terminal 703 943 240 0,3120
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-438
Central
439-702
C-terminal
703-943

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PG-2021_33
[NCBI] 		2815624 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Mammaliicoccus vitulinus
[NCBI] 		71237 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX32788.1 [NCBI]
Genbank nucleotide accession
MZ417330 [NCBI]
CDS location
range 72937 -> 75768
strand +
CDS
ATGACATTAAGAACTCAAGCATCTTTAGGTAAAGGGTTGAAGGAAGTAGAAAAGGATGACTTTAATCTGAATAATCTTTTTCTTGCTACCATCACAAAGGTAAATTATAAATACCAAACAGTAGAACTAAGAACAAAGTATACTTATGCAGGTAGAAATATAGGGTCTAACGGAGAGTTTTCTGCACCCTTCCCTAAATCATTTATAGGAAGAACACCTGAAGGAGCCCTATTTGGAGATAACAATATTATAGTACCAGGTTCTATTGCTCTAGTAGGATTCTTAGAAGGGGATGCAGGACAGCCTTTTATTATAAATGTTTATGGATACCCAAATGATAATAAGATGCTAACACCTAACCCTCTAGAGAGTGGAGACATAAATAATAGAGAAATCTATAAATATGGTAGTATGATTCATCAAATAAAGCCATCACTTACTTATAGTTACTTAGATGGTGAAGGTACAAGTATAAAATCTTTTAATGGTAAATCATTTATTTCAATAACATCACAGGAAGATGAGAGACCTCTAGCAACAGATTTTTATACAGGTACTGAATATGAAGATTTATATACTTCTTATTATGGTGATGGTTCAGAAGTAGAACCTAGAAATCAAATATCTCCTAATATGCTATTAAAGCACAGAGGAGAATATACACATGATGGTGAAGAAGATAACCATATAACTACCTTACATCTAACAGAAAAGGGAGCGGTAAGAGTATCAGTAATGAATACTGAAACACAAGAACGCACCACTCAAGAGATGGATGAAAATGGAAATTATAGAGTTATTTATCAAGGAGATGAATTAATTCTTGATGAAGCTCAAGTATGGATAGAGTATGGAATAAATAAAGATACTAAATCATTTTATATTAAAAATGAAAAGCAGGAATTTGAATTCACAGATGAAGGTGTACTTATTAATGGAACACCTTTAATAGATAACTTAGATGAAAGTTTACAAGAAGCATTTGAAAAACTTAAGGAGATACAAGAGGATTTAAAAGATATCAATAACTTACTAGAAGGAGCGGGTAAAGAGAACTTAGAAGAGTTAATAAGAACAGCTAAGGACTCTATTGAAGCATCTGGACAAGCTAGTAGAGATGTTGAGAAATTAAGAGGCGATATATCCACAGTATCCGGAAGAGTAGAAGGTAATATTAAAAAATTAGATGACTATATGAAAACAATGGATGATTTTGTAAAAGATACAAATGACTTTATAACAGAGTACACAGGGTCATTAGACAATGTTAAAAGAGATGTCACAACTATTTCCAATAACGAAAACAAGTATAGACATACAACATTTAGAGATATAAAAATACATGCAGATTTACCTTTTAAATTCCAAGGGTATAATGAGGCTATATCACAAAATAATGCAACCTATTATTTTCCACAGGGAATAGCAAGAGATGATGATTATTTCTATATAGTAACAAGGGCACCGGAAACAGGTAAAATGAGTTTGATAGTAGTATGGAACGCTAATACTTTTGAATATGTAACTAAGTTTTATGCAGGAAATTCCGGTGGTGAAGGTATACATGTAGAAAAAGAAGGAGACAAAAGATATGCATATATTAAGACTTCTTCTAATAAATTAGGAAAATTTGATGTAACAACTTTAAACTCTAGTATAGATGGGAACACTTTACAACCACTAGTAGAGTTTGATATAAATATGTTCATGAACTTCTTTAGAACAAAAGAAGGTTGGGCAGTAGAGGCTAATAACCAAACTAAGGGTATTTACTTACAAAGGGATACACTAGTATTTTATAATCATGATTTCTCTAAAAGATTAGGTTATTTATGGATACCACCTAGTAACTCTACTTTATGGTCTAATGACCTATTAGGTAGCGTATCTAATTATAGTGCTAAGAAACAAGGAATGTCTATGGTAAACAATACTCTTATACAAACTTTAGGTGGTAATTGGCTACCTACTAGAGATAAAGAGTTACACACTTATCACTTACAAGGGGTACAAGAAATAAGTCCTAGTGGTCAAATTATGAATGACTACACATATACACCACAAGAACTTAAGACATACTTAGAGAGTAAAGGTAAATCAGTAACTATGATAGAGCATGAGGGTGCTTTTACCTACAATAATAGGCTATACTCTGTTATTGTATATGCAGGAAGAACTACTACACAGGCTAATACCGGTGGTGTTCTTATTGTAGAATATAAACCTAAAGAAAAGGATTATACATTCAATGAACCAGGTATAATTTTTAGTGCTCCAACAGCTAACTATAATCCATATAAACCTAATATAGATAACAAACTTATTAATGAGTATACAGGTGAAGAAATATCGGATATTAAAACATTAGCTAAATATATGATTGATACATTCCAAGATAAAATAGTATTTTATACAAGTAAAATATTAGGTTTCAAGGACTTTAATGGTAATGACTATCCTACAGGTAGAAAAGTTATTATAGAAAACTTAAATAATAATACATTCCATTTACAAGATGTAGGTAACTATGATGATAATTTCTATGTACTAACTTATAACAGAACAGAAAATGCATTTAATTTGTATCCTAGAGATAGAGATGTAAGCAACACAAATATAGATTTATTAACTTTAAATTATAAAGTTGAAGGTTATTTTATAAATGCTATAAATTCACCTGAGGGTGTTAATTCCAGTGGTTGGGTGAAAACAAGAAACTATGGAACAAATGGGAGAATAGAATATAATCCTATAGATAGTTATGACACCTATATAAACATTAGAAACAATAATCAATGGCAAGGTTGGAAAAAAATAACAACGGTAGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6dd3f5538de48f29e7c2d9c583ea9a2e71a748ef831bc2c6e8a2fe46a9e8ad25
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7497
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank