Protein

View in Explore
Genbank accession
ALO80258.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MPKTKIKKRHLELPLLPEDSGVDSSFILDAIDGEIGTSWKERDSALEVKNKLESIVTESDKLDASAIKNLPSSDVVSVNGETGVVVLNADDIDDSSTGNKFVDSTEKSKLANIPSDQTALNDDIELRVSINDAKISYPGDQDISGIGVNSSRIDSLDQDKITQDAAIAANTAKISYPGDQDISGIGVNASAITALDNNKLEAGDFKTINNESIVGSGNISISGGSGGDEYNNIYRDSTDSGLVGNVDGTNTSFTVSNGSYNPATLNVFVEGQLFTAGHGITETSPGTGVFTFENAPRVGTNLYVTYQVGNLTTDILDGSIIESKLSSDVITKFGNVPNGYISPRTYGAIMDGVTDDRTAFMSTLSAANTLGKRIYIDSDMFLDVEELATKSIFIPDNIWIEGRDKDVNIIYNNKYSPAFVIALSDNITFKNFTFLYDQTIDATVTSNESVQNAANITQYKNYLTNEKGITFTSSNPIWRGPTLYMSTLLIAGGKYITIDNVKFKARGENAPNFIPWAIKFKEEHSKNITVTNDVEAETTIPQHITFKDVVLDGTIMGVQGIVRNFNCDGLKSYRYSDMQSLDGSNVGGVGYWMAPPHLFYINSDNALVYNPGEVKLTNTIDYGEYVGTPNVRPTISGYCNSLKMVTANDNNLVDGYITYRRDGFADFGDLTNVTIKNVYAECKSDIFDSTFKFTPLRFVGDIDGCVFENIEIRDISDVAHVYPVYFATGNNTIYNNMHLFVNGLDVGGVGFFGISGSNNKILNSSLNIKNHTSTSEFIGVIYHNSTARSTGSNNYYNVLVNGWRKFGSNVGALKSRTLFAAIENPNNNYAKLTDTNNNWVSEQINEMERNTWTRSEIVDITANTEQALTLDIPSGYAVKKIETLIIEAFDAGTTVSIGTLSGSANNLIPSMSTSVGNRTTVDINEEYNSTAYRQIFVRTSTGTFNSLGEFKITLTLTRTVTN
Physico‐chemical
properties
protein length:962 AA
molecular weight: 104832,04730 Da
isoelectric point:4,63354
aromaticity:0,09044
hydropathy:-0,26819

Domains

Domains [InterPro]
DC_1402
ATT
1–335
DC_1402 IPR011050 DC_0969
IPR012334
STR
331–593
IPR012334
IPR012334
STR
331–590
IPR012334
ALO80258.1
1 962
Architecture
ATT
STR
RBD
ATT 1-335 | STR 336-593 | RBD 594-962
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ALO80258.1
1 962
Domain Start End Length (AA) Confidence
N-terminal 1 356 356 0,9947
Central domain 357 839 484 0,9823
C-terminal 840 962 122 0,9806
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-356
Central
357-839
C-terminal
840-962

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage phi4:1_18
[NCBI] 		1747285 Uroviricota > Caudoviricetes > Lightbulbvirus >
Host Cellulophaga baltica
[NCBI] 		76594 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALO80258.1 [NCBI]
Genbank nucleotide accession
KT962246 [NCBI]
CDS location
range 64976 -> 67864
strand -
CDS
ATGCCTAAAACTAAAATTAAAAAAAGACATTTAGAATTACCTTTACTTCCAGAAGACTCAGGAGTAGATTCTTCTTTTATACTGGATGCTATTGATGGAGAGATAGGTACCAGTTGGAAAGAAAGAGACTCGGCTTTAGAGGTAAAGAACAAACTAGAGTCTATAGTAACTGAGTCTGACAAGCTAGATGCCTCAGCAATAAAAAACTTACCTTCAAGTGATGTAGTGTCTGTTAATGGAGAAACTGGAGTTGTAGTTTTAAATGCAGATGATATTGACGATTCTAGTACAGGAAACAAGTTTGTAGATTCAACTGAAAAAAGTAAGCTAGCAAATATTCCTAGTGATCAAACTGCATTAAATGATGACATAGAATTAAGAGTATCTATAAATGATGCAAAAATATCTTATCCAGGTGACCAAGATATCTCAGGAATTGGGGTTAACTCAAGCAGAATAGACTCTTTAGATCAAGATAAAATAACACAAGATGCTGCCATAGCAGCAAACACAGCAAAAATATCTTATCCAGGTGACCAAGATATCTCAGGAATAGGAGTTAATGCTTCTGCTATTACAGCTTTAGATAATAATAAGTTAGAAGCTGGAGACTTTAAAACTATAAATAATGAATCTATAGTAGGCTCTGGAAATATAAGTATTTCAGGAGGAAGTGGAGGAGATGAGTATAATAATATTTATAGAGATTCCACTGATTCAGGGTTAGTAGGAAATGTAGATGGTACTAACACTTCTTTCACAGTATCTAATGGTTCATACAACCCTGCAACTTTAAACGTATTTGTTGAAGGTCAACTGTTCACAGCAGGTCATGGTATAACTGAAACTTCTCCTGGAACTGGAGTTTTTACATTTGAAAATGCACCTAGGGTAGGGACTAATTTATACGTAACATACCAAGTAGGTAATTTAACTACTGATATTTTAGATGGTTCTATTATTGAAAGTAAATTATCGTCTGACGTAATAACTAAATTTGGAAATGTTCCAAATGGTTATATTTCTCCTCGTACATATGGTGCAATAATGGATGGTGTAACAGATGACAGAACAGCTTTTATGTCTACGTTATCTGCTGCAAATACCTTGGGTAAACGTATTTACATTGATTCCGATATGTTTTTAGATGTAGAAGAGTTAGCAACTAAGAGTATATTCATACCAGATAATATTTGGATTGAAGGTAGAGATAAAGATGTTAATATAATATACAACAATAAATATTCTCCTGCATTTGTAATAGCATTGTCTGATAATATTACATTTAAGAATTTTACATTTTTATATGATCAAACAATTGATGCAACAGTAACATCTAATGAATCTGTACAGAATGCTGCAAATATAACTCAATACAAGAATTATTTAACTAATGAAAAAGGAATAACATTTACATCAAGTAATCCTATATGGAGAGGACCGACTTTGTATATGTCTACACTACTTATTGCAGGTGGTAAATACATAACAATAGATAATGTAAAGTTTAAAGCTAGAGGTGAGAATGCTCCTAATTTTATTCCTTGGGCTATTAAATTCAAAGAGGAACACTCTAAAAATATAACAGTTACTAATGATGTAGAAGCAGAAACAACAATACCTCAACACATAACATTTAAAGATGTTGTTTTAGATGGTACAATAATGGGTGTCCAAGGTATTGTAAGGAACTTTAATTGTGATGGATTAAAATCTTATCGTTATTCTGATATGCAGAGTTTAGACGGTAGTAATGTAGGGGGTGTAGGTTATTGGATGGCACCACCACACTTATTTTATATAAATTCAGATAATGCTTTAGTTTATAATCCAGGAGAAGTTAAACTAACTAATACTATTGATTATGGTGAGTATGTAGGAACACCTAATGTTAGACCTACAATTAGTGGTTATTGTAACTCTTTAAAAATGGTAACTGCAAATGATAATAATTTAGTTGATGGTTATATCACTTACAGAAGAGATGGTTTCGCTGATTTTGGAGACTTAACAAATGTTACAATAAAGAATGTTTATGCAGAATGTAAAAGTGATATTTTTGATTCAACATTTAAGTTCACACCTCTTAGATTTGTAGGTGATATAGATGGTTGTGTATTTGAAAATATAGAGATTAGAGATATTTCAGATGTTGCCCATGTGTATCCTGTATATTTTGCTACTGGGAACAACACTATTTATAATAATATGCATCTATTTGTTAATGGTTTGGACGTTGGAGGTGTAGGCTTTTTCGGAATCTCAGGAAGCAATAACAAAATATTAAACTCTAGTTTAAACATTAAAAATCATACATCTACTTCTGAATTTATTGGGGTAATTTATCATAATTCTACAGCAAGATCAACAGGGTCAAATAATTATTATAATGTTTTAGTTAATGGTTGGAGAAAGTTTGGTAGTAATGTAGGGGCATTGAAAAGTAGAACTTTATTTGCTGCAATAGAGAATCCTAATAATAACTATGCAAAACTTACGGACACAAACAACAATTGGGTTTCTGAGCAGATAAATGAAATGGAGAGGAATACATGGACTAGGAGTGAAATAGTAGACATAACAGCAAATACAGAACAAGCTCTAACCTTAGACATTCCTTCAGGTTATGCCGTTAAAAAAATAGAGACCTTAATCATAGAAGCTTTTGACGCAGGGACTACGGTTTCTATAGGCACTTTATCAGGTTCTGCAAATAATTTAATACCTTCTATGTCAACAAGTGTAGGCAATAGAACAACTGTTGATATTAATGAAGAGTACAATAGTACAGCGTACAGACAAATATTTGTAAGAACAAGTACTGGAACATTTAATTCTTTAGGGGAATTTAAAATTACATTAACATTGACTAGAACGGTTACAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6c1e2e99c793f672a71a89cbb654c9ad47f9152d9e7e80c107be484960175c77
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6479
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Large-scale maps of variable infection efficiencies in aquatic Bacteriodetes phage-host model systems Holmfeldt,K., Solonenko,N., Howard-Varona,C., Moreno,M., Malmstrom,R.R., Blow,M.J. and Sullivan,M.B. 2016-06-27 — GenBank