Phage RBP Database

Genbank accession

XNL98004.1 [GenBank]

Protein name

tail protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Seq2Symm

C6 confidence 0,976

C6	0,976
C3	0,004
C1	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MALVSQSIKNLKGGISQQPEILRYPEQGSLQVNGWSSETEGLQKRPPMVFIKSLGPRGYLGEDPYVHLINRDEYEQYYAVFTGNDVRVFDLSGYEYQVRGDRSYVTVNNPKDNLRMVTVADYTFIVNRTRQVRESPLQTNGGVFMDNVDGIINVRGGQYGRKLEVNINGVWVSHQLPPGDNAKDDPPKVDAQAIAEALAVLLRAAHPTWTFDVGTGYIHCVAPANTTLDVFETKDGYADQLISPVTHYVQSFSKLPLNAPDGYMVKIVGDTSKTADQYYVKYDKSQKVWKETVGWNISIGLEYHTMPWTLVRAADGNFDLGYHEWTNRRAGDEDTNPQPSFVNSTITDVFFFRNRLGFISGENIVMSRTSKYFEFYPPSVANYTDDDPLDVAVSHNRVSVLKYAVSFAEELLLWSDEAQFVLSANGVLSAKTAQLDLTTQFDVSDRARPYGIGRNIYYASPRSSFTSIMRYYAVQDVSSVKNAEDMTAHVPNYIPNGVYSINGSGTENFACVLTKGAPSKVFIYKFLYMDENIRQQSWSHWDFGDGVEVMAANCINSTMYLLMRNAYNVWIAAVDFKKESTDFPFEPYRFHVDAKRSYHISETAYDIETNQTVVNVKDIYGASFSKGTVAICESDGKITEYEPMGDSWNSTPDIRISGDISGKDIVIGFLYDFQYVFSRFLIKQEQNDGTTSTEDSGRLQLRRAWVNYQNTGAFTVSVDNGSREFNYLVNARVGSTGLRLGQKATTTGQYRFPVTGNALYQKVSLSSFNASPVSIIGCGWEGNYSRRANGI

Physico‐chemical properties

protein length:	791 AA
molecular weight:	88842,12860 Da
isoelectric point:	5,42269
aromaticity:	0,12389
hydropathy:	-0,38142

Domain architecture

XNL98004.1

1 791 aa

TTP 1–791

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR058003
TTP

IPR058003

XNL98004.1

1791 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR058003	TTP	DC_0684	1	791	InterPro cluster	Tail tubular protein gp12	Central	High	Text match	1810 proteins / 1902 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XNL98004.1

1 791 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	590	590	0,9115
Central domain	591	780	191	0,2571
C-terminal	781	791	10	0,9614

Note: Constraints were applied during segmentation.
Fixed 12 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage RAD13 [NCBI] · taxon 3389929

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Klebsiella pneumoniae ATCC 43816 [NCBI] · taxon 1316582

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae

Genbank protein accession

XNL98004.1 [NCBI]

Genbank nucleotide accession

PQ803403 [NCBI]

CDS location

range 14545 -> 16920
strand +

CDS

ATGGCTCTCGTATCACAATCAATCAAGAACCTCAAGGGAGGCATTAGCCAGCAGCCTGAAATCCTACGGTACCCAGAGCAGGGTTCACTTCAGGTCAACGGTTGGTCCTCCGAGACCGAGGGTCTCCAGAAGCGACCACCTATGGTGTTCATCAAGTCACTTGGCCCTCGGGGCTACTTGGGGGAAGACCCTTACGTCCACCTCATCAACCGTGATGAGTACGAGCAGTATTACGCTGTGTTCACTGGGAATGACGTAAGGGTGTTCGACCTGTCCGGCTATGAGTATCAGGTCCGAGGAGACCGCTCATATGTGACCGTCAATAACCCTAAGGATAACTTGCGGATGGTCACCGTGGCCGACTACACGTTCATCGTCAACAGGACCAGACAGGTGCGGGAAAGTCCACTCCAAACTAACGGAGGGGTGTTCATGGATAACGTGGACGGCATCATTAACGTTCGTGGTGGGCAGTATGGGCGCAAGCTCGAAGTGAACATTAATGGTGTGTGGGTTAGCCACCAGCTGCCTCCGGGCGACAACGCTAAGGATGACCCACCGAAGGTTGACGCTCAGGCCATCGCCGAGGCTCTCGCAGTCCTTCTCCGAGCGGCCCACCCTACGTGGACATTTGACGTTGGAACAGGGTACATTCACTGCGTTGCTCCAGCTAACACCACTCTGGATGTGTTCGAAACGAAGGATGGCTACGCCGACCAGTTAATAAGCCCGGTGACCCATTACGTCCAGAGCTTCTCTAAGTTGCCTCTGAACGCCCCAGACGGGTACATGGTGAAGATTGTTGGGGACACCTCCAAGACGGCTGACCAGTATTACGTCAAGTACGACAAGAGTCAGAAGGTATGGAAGGAAACTGTCGGTTGGAACATCTCGATAGGCTTAGAGTACCACACAATGCCTTGGACTCTTGTCCGGGCAGCTGATGGCAACTTTGACCTAGGCTATCACGAGTGGACCAACCGTCGGGCTGGCGATGAGGACACAAACCCTCAACCGTCCTTTGTTAACTCCACGATAACCGATGTGTTCTTCTTCAGGAACCGCTTAGGGTTCATCTCTGGGGAGAACATTGTGATGTCCCGTACCAGTAAATACTTCGAGTTCTACCCACCGTCAGTGGCCAACTACACAGACGATGACCCGTTGGATGTTGCTGTGAGCCATAACCGAGTGTCGGTCCTGAAGTACGCTGTGAGCTTCGCTGAGGAGCTTCTGCTGTGGTCTGATGAGGCACAGTTCGTCCTGTCGGCAAACGGTGTGTTATCCGCTAAGACTGCACAGCTGGACCTGACCACTCAGTTCGATGTGTCGGACCGAGCGCGTCCGTATGGTATCGGCAGGAACATCTACTACGCGTCCCCTCGCAGCTCCTTTACGTCCATCATGCGTTACTACGCGGTACAGGATGTAAGTTCTGTGAAGAACGCAGAGGACATGACAGCCCACGTCCCGAACTACATCCCGAACGGTGTGTACAGCATCAATGGGTCTGGTACGGAGAACTTCGCCTGTGTGCTGACCAAGGGTGCTCCCAGCAAGGTGTTCATCTACAAGTTCCTCTACATGGACGAGAACATCCGGCAGCAGTCGTGGTCCCACTGGGACTTCGGGGACGGTGTGGAGGTGATGGCGGCAAACTGTATCAACTCAACGATGTACCTGCTGATGCGGAACGCCTACAACGTGTGGATAGCTGCTGTGGACTTTAAGAAGGAGTCGACCGACTTCCCGTTCGAGCCTTACAGGTTCCACGTGGACGCCAAGCGGTCGTACCACATCTCAGAGACTGCGTATGACATCGAGACCAACCAGACGGTAGTTAACGTCAAGGATATCTATGGCGCGTCGTTCTCTAAGGGTACGGTGGCAATCTGCGAGAGTGACGGTAAAATTACCGAGTATGAGCCCATGGGCGACTCTTGGAACTCAACCCCAGACATCCGTATTAGCGGTGACATCTCCGGTAAGGATATCGTCATTGGGTTCCTGTACGACTTCCAGTATGTATTCAGTCGGTTCCTCATCAAGCAGGAGCAGAATGACGGCACAACGTCCACTGAGGACTCCGGTCGTCTACAGCTGCGCAGAGCGTGGGTGAACTATCAGAACACCGGAGCGTTCACTGTGAGCGTCGACAACGGTAGCCGCGAGTTCAACTATCTGGTCAACGCCAGAGTGGGTTCTACGGGCCTACGTCTGGGCCAGAAGGCTACAACTACTGGTCAATACCGCTTCCCGGTGACAGGCAACGCATTGTACCAGAAGGTGTCTCTGAGTTCCTTCAACGCTTCCCCGGTGTCAATCATCGGGTGTGGTTGGGAGGGTAACTACAGCAGGCGCGCCAACGGCATTTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)