Protein
View in Explore- Genbank accession
- ASD52214.1 [GenBank]
- Protein name
- tail tubular protein B
- RBP type
-
TSP
- Protein sequence
-
MGLVSQSVKNLKGGISQQPDILRFPNQGAFQENGWSSETQGLQKRPPTVFVKKLADQGSFGGQPLIHMINRDAVEQYDVVFTGTSLRVFGLDGKEYAVRGYDGYANTSQPRKDLRMITVADYTFVTNKIKVTDMGKTMTHAGAKPLGQRCVVNVRGGQYGRTLKFGINGSDSDAVLGMPAGDVADYPSPPPGTPAKQVEWTDAGFIAREMAKRFDATMTAAGKPYRATAGQGWIVIDANGGPDITSVKTDDGYAGQLLNAFLYQVQAFNKLPSQCVDGYLVEITGEAARSGDNYWVQYSASGLVWKEVAKPGIIAGLDKTTMPRALVRAADGNFDWKVLDWVERKSGDDDTNPMPSFIGAPINEIFFFRNRLGFLSGENVIMSRTSKYFNFFPSSVAQVSDDDPIDVAISHNRVSILKYAVPFSEQLLLWSDQAQFVLSSAGTMTSKSIQLDLTTEFDVSDGARPYGIGRGVYFAAPRASYTSIKRYYAVQDVSDVKSAEDISAHIPSYIKNEVFSIHGSGTENFVAILSDGDPSKVFIYKFLYLNEDLAQQSWSHWTFGDDTKVLSATCIGSYMHVILERPSGITLERIEFTANTVDLPMEPYRAYMDMKVEASVEPFNEDLYVTTIDVPSIYGGVLGTNVVLYTLDQHGVLERHEAPPRGWIAGSKIELVGDRSGEKFVVGREYTFHYEFSKFLIKQTADDGSTSTEDIGRLQLRKAWLNYEQSGAFEVNVYNGSTEYVYNMAGGRLGTELILGSFTLGTGQFRFPVAGNALRQQVSIVSSNPNPLNVIGCGWEGNYIRRSSGI
- Physico‐chemical
properties -
protein length: 806 AA molecular weight: 88664,70670 Da isoelectric point: 5,39416 aromaticity: 0,11042 hydropathy: -0,25062
Domains
Domain architecture
ASD52214.1
1
806 aa
TTP 1–806
ATT Attachment Domain
STR Structural Domain
RBD Receptor-Binding Domain
CBM Carbohydrate-Binding Module
LEC Lectin-like Domain
ENZ Enzymatic Domain
CHP Intramolecular Chaperone
LNK Linker/Spacer Domain
TAS Tail-Associated Structural
TTP Tail Tubular Protein
UNK Uncharacterized Domain
Unmapped
Proteins with similar domain architecture
Tail Spike Domain Segmentation
Segmented into three structural domains: N-terminal, central, and C-terminal.
Domain layout
ASD52214.1
1
806 aa
| Domain | Start | End | Length (AA) | Confidence |
|---|---|---|---|---|
| N-terminal | 1 | 144 | 144 | 0,9917 |
| Central domain | 145 | 343 | 200 | 0,1801 |
| C-terminal | 344 | 806 | 462 | 0,2343 |
N-terminal
Central domain
C-terminal
View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.
Taxonomy
Phage
Pseudomonas phage PspYZU08
[NCBI]
· taxon 1983557
Host
No host information
Coding sequence (CDS)
Genbank protein accession
ASD52214.1
[NCBI]
Genbank nucleotide accession
KY971611
[NCBI]
CDS location
range 24896 -> 27316
strand +
strand +
CDS
ATGGGACTTGTTTCACAAAGCGTTAAGAACCTCAAAGGCGGGATCAGTCAGCAACCTGACATCCTGAGGTTTCCCAATCAGGGCGCCTTTCAGGAGAACGGCTGGTCCTCTGAGACCCAAGGGTTACAGAAGCGACCGCCCACGGTGTTCGTTAAGAAGCTCGCTGACCAAGGATCTTTCGGTGGTCAACCGCTGATCCACATGATCAACCGGGACGCCGTAGAGCAATACGATGTGGTGTTCACTGGGACCTCTTTGAGGGTCTTCGGGTTGGACGGTAAGGAGTACGCGGTGCGTGGCTATGACGGCTACGCGAACACTTCACAGCCTCGTAAGGATCTGCGGATGATCACAGTGGCCGACTACACGTTCGTGACCAACAAGATCAAGGTAACGGATATGGGCAAGACCATGACGCATGCCGGGGCCAAGCCTCTGGGCCAGCGCTGTGTAGTCAACGTGCGTGGTGGTCAGTATGGTCGCACCTTGAAGTTCGGCATCAACGGCTCAGACTCTGACGCTGTTCTGGGCATGCCTGCTGGTGATGTCGCTGACTACCCAAGTCCACCACCGGGAACACCAGCCAAACAGGTTGAGTGGACCGATGCGGGCTTTATTGCTCGTGAGATGGCTAAGCGGTTCGATGCAACCATGACGGCTGCGGGTAAGCCTTACAGGGCCACTGCGGGGCAAGGCTGGATTGTGATCGACGCGAATGGCGGTCCTGACATCACTTCGGTGAAGACAGATGACGGCTACGCTGGGCAGTTGCTCAATGCGTTCCTCTATCAGGTCCAAGCGTTCAACAAGCTGCCATCACAATGTGTCGATGGGTATCTCGTGGAGATCACTGGGGAAGCTGCACGCTCTGGTGATAACTACTGGGTTCAGTACAGCGCCTCAGGGCTCGTCTGGAAGGAGGTAGCCAAACCGGGTATCATTGCGGGGCTCGACAAGACAACGATGCCAAGAGCGCTTGTGAGAGCTGCTGACGGCAACTTCGACTGGAAGGTCCTCGACTGGGTTGAACGTAAGTCAGGTGATGATGACACCAACCCGATGCCCAGCTTTATTGGAGCGCCTATCAACGAGATCTTCTTCTTCCGCAACCGTTTGGGTTTCCTCTCAGGCGAAAACGTGATCATGTCGAGGACCTCGAAGTACTTCAACTTCTTCCCTTCGAGCGTGGCTCAGGTCTCCGACGATGACCCTATCGACGTGGCGATCTCCCACAACCGTGTGTCGATCTTGAAGTACGCTGTTCCGTTCTCTGAGCAGCTCTTGCTGTGGTCTGACCAAGCTCAGTTCGTTCTCTCGTCTGCGGGCACGATGACTTCCAAAAGCATCCAGCTCGACCTGACCACTGAGTTCGATGTGAGCGACGGTGCTCGACCATACGGAATTGGACGTGGTGTTTATTTCGCTGCTCCTCGTGCCAGCTACACCAGCATCAAGCGGTACTACGCGGTACAGGACGTGAGCGATGTGAAGTCCGCTGAGGACATCTCTGCGCACATTCCGAGCTACATCAAGAACGAGGTCTTCTCGATCCATGGGTCGGGCACTGAGAACTTCGTAGCGATCCTCTCTGACGGTGATCCTTCCAAGGTGTTCATCTACAAGTTCCTGTACCTCAACGAGGACTTGGCGCAACAGAGCTGGAGCCATTGGACGTTTGGTGATGACACTAAGGTACTCTCTGCGACCTGCATTGGATCGTACATGCACGTTATCCTTGAGAGACCCTCTGGCATCACGCTGGAGCGTATTGAGTTCACAGCCAACACCGTGGATCTCCCAATGGAGCCCTACCGTGCCTACATGGACATGAAGGTTGAAGCGAGTGTTGAGCCTTTCAACGAGGACCTATACGTGACCACAATTGACGTTCCGTCGATCTATGGCGGTGTGCTGGGGACCAATGTTGTGCTGTACACGCTGGATCAACATGGTGTCCTTGAGAGACATGAGGCACCGCCTCGTGGCTGGATCGCTGGCTCCAAGATTGAACTCGTGGGTGATCGCTCTGGAGAGAAGTTCGTGGTTGGTCGGGAGTACACGTTCCACTATGAGTTCTCGAAGTTCCTCATCAAGCAAACCGCTGATGACGGCTCGACCAGCACTGAGGACATTGGACGGTTGCAGTTGCGCAAAGCGTGGCTGAACTACGAACAGTCTGGTGCCTTCGAGGTCAACGTGTACAACGGCTCAACCGAGTACGTGTACAACATGGCCGGGGGTCGCTTGGGTACTGAGCTGATCCTCGGTAGCTTCACGCTTGGTACTGGGCAGTTCCGCTTCCCGGTTGCTGGCAACGCTCTACGACAACAGGTTTCCATCGTCAGCTCCAACCCGAACCCACTCAACGTGATCGGATGCGGCTGGGAAGGGAACTACATTCGCCGGTCTTCCGGTATCTAA
Genome Context
Tertiary structure
Literature
| Title | Authors | Date | PMID | Source |
|---|---|---|---|---|
| Isolation of lytic bacteriophages infecting Pseudomonas strains for biocontrol of fish and shrimp spoilage during chilled storage | Yang,Z., Tao,X., Gao,L. and Rao,S. | 2022 | — | GenBank |