Protein

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Genbank accession
ASD52214.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,57
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFPNQGAFQENGWSSETQGLQKRPPTVFVKKLADQGSFGGQPLIHMINRDAVEQYDVVFTGTSLRVFGLDGKEYAVRGYDGYANTSQPRKDLRMITVADYTFVTNKIKVTDMGKTMTHAGAKPLGQRCVVNVRGGQYGRTLKFGINGSDSDAVLGMPAGDVADYPSPPPGTPAKQVEWTDAGFIAREMAKRFDATMTAAGKPYRATAGQGWIVIDANGGPDITSVKTDDGYAGQLLNAFLYQVQAFNKLPSQCVDGYLVEITGEAARSGDNYWVQYSASGLVWKEVAKPGIIAGLDKTTMPRALVRAADGNFDWKVLDWVERKSGDDDTNPMPSFIGAPINEIFFFRNRLGFLSGENVIMSRTSKYFNFFPSSVAQVSDDDPIDVAISHNRVSILKYAVPFSEQLLLWSDQAQFVLSSAGTMTSKSIQLDLTTEFDVSDGARPYGIGRGVYFAAPRASYTSIKRYYAVQDVSDVKSAEDISAHIPSYIKNEVFSIHGSGTENFVAILSDGDPSKVFIYKFLYLNEDLAQQSWSHWTFGDDTKVLSATCIGSYMHVILERPSGITLERIEFTANTVDLPMEPYRAYMDMKVEASVEPFNEDLYVTTIDVPSIYGGVLGTNVVLYTLDQHGVLERHEAPPRGWIAGSKIELVGDRSGEKFVVGREYTFHYEFSKFLIKQTADDGSTSTEDIGRLQLRKAWLNYEQSGAFEVNVYNGSTEYVYNMAGGRLGTELILGSFTLGTGQFRFPVAGNALRQQVSIVSSNPNPLNVIGCGWEGNYIRRSSGI
Physico‐chemical
properties
protein length:806 AA
molecular weight: 88664,70670 Da
isoelectric point:5,39416
aromaticity:0,11042
hydropathy:-0,25062

Domains

Domains [InterPro]
IPR058003
TTP
1–806
IPR058003
ASD52214.1
1 806
Architecture
TTP
TTP 1-806
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ASD52214.1
1 806
Domain Start End Length (AA) Confidence
N-terminal 1 144 144 0,9917
Central domain 145 343 200 0,1801
C-terminal 344 806 462 0,2343
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-144
Central
145-343
C-terminal
344-806

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PspYZU08
[NCBI] 		1983557 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Pijolavirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ASD52214.1 [NCBI]
Genbank nucleotide accession
KY971611 [NCBI]
CDS location
range 24896 -> 27316
strand +
CDS
ATGGGACTTGTTTCACAAAGCGTTAAGAACCTCAAAGGCGGGATCAGTCAGCAACCTGACATCCTGAGGTTTCCCAATCAGGGCGCCTTTCAGGAGAACGGCTGGTCCTCTGAGACCCAAGGGTTACAGAAGCGACCGCCCACGGTGTTCGTTAAGAAGCTCGCTGACCAAGGATCTTTCGGTGGTCAACCGCTGATCCACATGATCAACCGGGACGCCGTAGAGCAATACGATGTGGTGTTCACTGGGACCTCTTTGAGGGTCTTCGGGTTGGACGGTAAGGAGTACGCGGTGCGTGGCTATGACGGCTACGCGAACACTTCACAGCCTCGTAAGGATCTGCGGATGATCACAGTGGCCGACTACACGTTCGTGACCAACAAGATCAAGGTAACGGATATGGGCAAGACCATGACGCATGCCGGGGCCAAGCCTCTGGGCCAGCGCTGTGTAGTCAACGTGCGTGGTGGTCAGTATGGTCGCACCTTGAAGTTCGGCATCAACGGCTCAGACTCTGACGCTGTTCTGGGCATGCCTGCTGGTGATGTCGCTGACTACCCAAGTCCACCACCGGGAACACCAGCCAAACAGGTTGAGTGGACCGATGCGGGCTTTATTGCTCGTGAGATGGCTAAGCGGTTCGATGCAACCATGACGGCTGCGGGTAAGCCTTACAGGGCCACTGCGGGGCAAGGCTGGATTGTGATCGACGCGAATGGCGGTCCTGACATCACTTCGGTGAAGACAGATGACGGCTACGCTGGGCAGTTGCTCAATGCGTTCCTCTATCAGGTCCAAGCGTTCAACAAGCTGCCATCACAATGTGTCGATGGGTATCTCGTGGAGATCACTGGGGAAGCTGCACGCTCTGGTGATAACTACTGGGTTCAGTACAGCGCCTCAGGGCTCGTCTGGAAGGAGGTAGCCAAACCGGGTATCATTGCGGGGCTCGACAAGACAACGATGCCAAGAGCGCTTGTGAGAGCTGCTGACGGCAACTTCGACTGGAAGGTCCTCGACTGGGTTGAACGTAAGTCAGGTGATGATGACACCAACCCGATGCCCAGCTTTATTGGAGCGCCTATCAACGAGATCTTCTTCTTCCGCAACCGTTTGGGTTTCCTCTCAGGCGAAAACGTGATCATGTCGAGGACCTCGAAGTACTTCAACTTCTTCCCTTCGAGCGTGGCTCAGGTCTCCGACGATGACCCTATCGACGTGGCGATCTCCCACAACCGTGTGTCGATCTTGAAGTACGCTGTTCCGTTCTCTGAGCAGCTCTTGCTGTGGTCTGACCAAGCTCAGTTCGTTCTCTCGTCTGCGGGCACGATGACTTCCAAAAGCATCCAGCTCGACCTGACCACTGAGTTCGATGTGAGCGACGGTGCTCGACCATACGGAATTGGACGTGGTGTTTATTTCGCTGCTCCTCGTGCCAGCTACACCAGCATCAAGCGGTACTACGCGGTACAGGACGTGAGCGATGTGAAGTCCGCTGAGGACATCTCTGCGCACATTCCGAGCTACATCAAGAACGAGGTCTTCTCGATCCATGGGTCGGGCACTGAGAACTTCGTAGCGATCCTCTCTGACGGTGATCCTTCCAAGGTGTTCATCTACAAGTTCCTGTACCTCAACGAGGACTTGGCGCAACAGAGCTGGAGCCATTGGACGTTTGGTGATGACACTAAGGTACTCTCTGCGACCTGCATTGGATCGTACATGCACGTTATCCTTGAGAGACCCTCTGGCATCACGCTGGAGCGTATTGAGTTCACAGCCAACACCGTGGATCTCCCAATGGAGCCCTACCGTGCCTACATGGACATGAAGGTTGAAGCGAGTGTTGAGCCTTTCAACGAGGACCTATACGTGACCACAATTGACGTTCCGTCGATCTATGGCGGTGTGCTGGGGACCAATGTTGTGCTGTACACGCTGGATCAACATGGTGTCCTTGAGAGACATGAGGCACCGCCTCGTGGCTGGATCGCTGGCTCCAAGATTGAACTCGTGGGTGATCGCTCTGGAGAGAAGTTCGTGGTTGGTCGGGAGTACACGTTCCACTATGAGTTCTCGAAGTTCCTCATCAAGCAAACCGCTGATGACGGCTCGACCAGCACTGAGGACATTGGACGGTTGCAGTTGCGCAAAGCGTGGCTGAACTACGAACAGTCTGGTGCCTTCGAGGTCAACGTGTACAACGGCTCAACCGAGTACGTGTACAACATGGCCGGGGGTCGCTTGGGTACTGAGCTGATCCTCGGTAGCTTCACGCTTGGTACTGGGCAGTTCCGCTTCCCGGTTGCTGGCAACGCTCTACGACAACAGGTTTCCATCGTCAGCTCCAACCCGAACCCACTCAACGTGATCGGATGCGGCTGGGAAGGGAACTACATTCGCCGGTCTTCCGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7358e8130682d3e984be81edcb5701e9886bd7463e5b064c38563c72b55c686a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8857
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of lytic bacteriophages infecting Pseudomonas strains for biocontrol of fish and shrimp spoilage during chilled storage Yang,Z., Tao,X., Gao,L. and Rao,S. 2022 — GenBank