Protein

View in Explore
Genbank accession
YP_009320872.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,81
Protein sequence
MALKTKIIVQQILNIDDTTTTASKYPKYTVVLGNSISSITAGELTAAVEASAASAAAAKDSEIAAKESETNAKDSENLAAIYATSSETSATQSAASAAEAERQAGLSQKSAEASATSAEESKGFRNSAELAAQNAETSRRLAEQAKTAAQQAQTAAETAKTGAETAKAGAEAAATTAGEHAASAKQSELNAKESETNAAGSAVEAGDKAVDATTEANRAKAEADRAAQIVDSKLDKEDISGFIKVYKTKAEADADVSNRVLGEKILVWNQTDSKYGWYKVAGTAEAPVLELVEIEQKLVSINNVHADDAGNVQITLPGGNPSLWLGEVTWFPYDKDSGVGYPGVLPADGREVLRVDYPDTWEAIEAGLIPSVSEAEWQAGATLYFSTGDGSTTFRLPDMMQGQAFRAPTKGEEDGGAIKEQIPYITTVNGIGPADDTGAIKLPYVAMVNGTIRPDENGNLALGNVVTKNVWNGTDGEVLLRGAFGLGGAGLILNEPDAVSFFKAMRAFGSGYYRNDNESNLVIPKYSAGFYSKVGDTHTFICSAYSNGVAFVASASDRDLDEESTVHTNILYGTANKPDLNNDTQGVLGLDKGGTGASTVSSAKTNLEVDRIKQLVGGTHITSQDQNIVFMVQDTKNWGVYDHSENKWISLPVEHGGTGATEPVQARKNLGAASAGINSDITQLRNMEGWPLSIKNGGIITRKYHAVPSDGFYLGSEVFSAQVQLDNSENPDTPRLEALFYAEGNYAQSRTERATVAAYRRTADGSLTATKYANLYMDSGAWNAERMQALGYSKGWDDDSFGFLAPFQASDVTGNDHGFVPIISAMTQSTGGYPMRATTGLISRGTSTWPAYAFRLRGDSNWGCTYQFHMTGDIDGWGSDYNNVVFNFTYTKNAVSDINLKDNIQDVSGEESLENIEKMEFKKFTYKFDKKKNIRRGVIAQQIELIDPQYVKAIGNPETDDITLTLDTNPLLMDALAAVKVLSERNKSLETKLQEMSTVIENINEKLNLMTRLSNIEAELDKMKGTS
Physico‐chemical
properties
protein length:1027 AA
molecular weight: 109977,38040 Da
isoelectric point:4,77308
aromaticity:0,07498
hydropathy:-0,40166

Domains

View on InterPro
Domain architecture
YP_009320872.1
1 1027 aa
CHP 896–993 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009320872.1
1 1027 aa
Domain Start End Length (AA) Confidence
N-terminal 1 499 499 0,8991
Central domain 500 698 200 0,2288
C-terminal 699 1027 328 0,8987
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Salmonella phage 100268_sal2 [NCBI] · taxon 1813783
Uroviricota Caudoviricetes Demerecviridae Epseptimavirus Epseptimavirus 100268sal2
Host
Salmonella enterica [NCBI] · taxon 28901
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Coding sequence (CDS)

Genbank protein accession
YP_009320872.1 [NCBI]
Genbank nucleotide accession
NC_031902.1 [NCBI]
CDS location
range 87826 -> 90909
strand -
CDS
ATGGCACTTAAAACTAAAATTATTGTACAGCAGATTCTGAACATAGATGACACTACAACTACTGCTAGTAAGTATCCTAAATATACAGTAGTTTTAGGTAATTCTATTAGTTCTATTACTGCTGGTGAATTAACTGCTGCTGTAGAAGCCTCTGCTGCTTCTGCTGCGGCAGCAAAAGATTCCGAAATTGCAGCAAAAGAATCTGAAACAAATGCTAAGGACTCGGAGAACCTAGCTGCAATTTATGCTACTTCTTCTGAAACATCTGCAACTCAATCTGCGGCATCTGCCGCGGAAGCTGAGAGACAAGCTGGTCTGTCACAAAAGAGTGCTGAAGCATCCGCTACATCGGCGGAAGAATCTAAAGGATTCAGGAATTCTGCTGAATTAGCTGCTCAAAATGCGGAGACCAGTCGTAGACTTGCCGAACAAGCTAAAACTGCGGCTCAACAAGCTCAGACAGCTGCAGAAACTGCTAAGACTGGTGCTGAAACAGCAAAAGCAGGTGCAGAAGCTGCCGCTACAACTGCTGGAGAACATGCTGCTTCCGCTAAACAATCAGAATTAAATGCTAAAGAATCAGAAACTAATGCGGCTGGTTCTGCTGTAGAAGCAGGAGATAAGGCTGTAGATGCTACTACTGAGGCAAATCGTGCTAAGGCTGAAGCCGATCGCGCAGCTCAGATTGTAGATAGCAAGCTGGATAAAGAAGATATATCTGGTTTCATCAAAGTTTATAAGACAAAAGCAGAAGCTGATGCAGATGTCTCAAATCGTGTTCTGGGTGAAAAGATTCTAGTCTGGAACCAAACTGATTCAAAATATGGTTGGTATAAGGTTGCTGGTACTGCTGAGGCTCCTGTCCTAGAATTAGTAGAAATTGAACAGAAACTCGTATCAATCAATAACGTTCATGCAGATGATGCTGGTAACGTACAGATCACTCTTCCAGGAGGTAACCCTTCTTTATGGTTAGGTGAAGTTACTTGGTTCCCTTACGATAAAGATTCGGGTGTTGGATACCCTGGTGTTCTGCCAGCTGATGGTCGTGAAGTACTTCGTGTTGACTATCCTGATACTTGGGAAGCCATCGAAGCTGGTCTAATTCCTTCTGTTTCAGAAGCTGAATGGCAGGCCGGTGCAACTCTCTACTTCTCCACTGGTGATGGTTCCACAACCTTCCGTTTACCAGATATGATGCAAGGGCAGGCTTTTCGTGCACCTACTAAGGGAGAAGAAGACGGCGGTGCTATTAAGGAACAGATTCCTTATATCACTACTGTGAATGGAATTGGTCCTGCTGATGATACTGGAGCTATTAAGCTTCCTTACGTGGCAATGGTCAATGGAACTATTCGTCCAGATGAGAACGGAAATCTAGCACTAGGTAACGTAGTAACCAAAAACGTTTGGAACGGTACTGATGGAGAAGTATTACTAAGAGGTGCTTTTGGTCTTGGTGGTGCTGGTTTAATCCTTAATGAGCCTGATGCTGTTTCCTTCTTTAAAGCAATGCGTGCTTTCGGTTCAGGGTATTATAGAAATGATAACGAGAGTAACTTAGTAATCCCTAAGTATTCTGCTGGATTCTACTCTAAAGTTGGAGATACCCATACCTTTATTTGTTCTGCCTATAGCAATGGTGTTGCTTTTGTAGCTTCTGCTTCTGATAGAGATTTAGATGAAGAATCTACAGTACATACTAATATTCTTTATGGTACTGCAAATAAGCCTGATTTAAATAATGATACTCAAGGTGTCTTAGGTCTCGATAAAGGAGGAACAGGAGCTTCTACAGTTAGTTCTGCCAAAACTAATCTAGAAGTGGATAGAATAAAGCAGCTAGTAGGAGGAACACATATAACCTCTCAGGATCAAAATATAGTGTTTATGGTTCAGGACACTAAAAACTGGGGGGTATACGACCATTCTGAAAACAAGTGGATATCTTTACCTGTTGAACACGGTGGTACTGGAGCTACTGAGCCAGTTCAAGCTAGAAAAAATTTAGGGGCTGCAAGTGCCGGTATTAACTCCGATATTACTCAGCTACGTAATATGGAGGGTTGGCCTCTTAGCATTAAGAACGGTGGTATTATTACTCGTAAATACCACGCAGTTCCTTCGGATGGGTTTTACTTAGGATCGGAAGTTTTTTCTGCTCAGGTCCAACTGGATAATTCAGAGAATCCAGATACCCCTCGTTTAGAGGCATTATTTTACGCTGAAGGTAACTATGCCCAATCTCGTACTGAAAGGGCTACAGTAGCTGCTTATAGGCGTACTGCAGATGGTTCGTTAACTGCTACTAAATATGCTAACCTGTACATGGATTCAGGGGCTTGGAATGCAGAACGTATGCAAGCTCTAGGGTATTCTAAAGGTTGGGACGATGATTCCTTTGGTTTCCTCGCTCCTTTTCAAGCTTCTGATGTAACGGGCAATGATCATGGATTCGTACCTATTATTAGTGCTATGACTCAATCCACAGGTGGCTACCCAATGAGGGCTACTACTGGATTAATATCTCGAGGTACTAGTACTTGGCCTGCCTATGCATTTAGACTTCGTGGAGATTCTAATTGGGGATGTACCTATCAGTTCCACATGACAGGGGATATTGACGGATGGGGGTCAGACTACAATAACGTTGTCTTTAACTTTACTTACACAAAAAATGCGGTGTCGGATATCAATCTAAAAGATAATATTCAAGACGTATCGGGTGAAGAATCTCTTGAAAACATTGAAAAAATGGAGTTCAAGAAATTCACCTATAAGTTTGATAAGAAAAAGAATATTAGACGTGGTGTTATTGCACAACAAATAGAGTTGATTGATCCTCAATATGTTAAAGCTATTGGCAATCCTGAAACCGACGATATTACTTTAACCCTAGATACCAATCCATTGTTAATGGATGCTTTAGCTGCTGTTAAGGTATTATCTGAAAGAAATAAGTCTCTTGAGACTAAATTACAAGAGATGTCTACTGTTATTGAAAACATTAACGAAAAGCTTAATTTGATGACTAGATTATCAAATATAGAAGCAGAGTTAGATAAAATGAAAGGTACTAGTTAA

Genome Context

Tertiary structure

YP_009320872.1
ESMFold structure
Source ESMFold
pLDDT 58.0
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Complete Genome Sequences of a lytic Siphoviridae Bacteriophages infecting several subspecies of Salmonella enterica Paradiso,R., Lombardi,S., Iodice,M.G., Riccardi,M.G., Orsini,M., Bolletti Censi,S., Galiero,G. and Borriello,G. 2016-12-29 — GenBank