Protein

View in Explore
Genbank accession
AXC39513.1 [GenBank]
Protein name
putative tail associated protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MALVIHYTRNEDGTFDVKRYRDNPMNFVVNHVPDGVPVRVFIDEIGEDNDVTEDFEALKENATFHIVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGASSNLANSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMSTYKVFNAAGKIVEYGYYDAGRGYLDIHPEGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGDPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTGGSDFSGVLVPNDTFSLVSAWTNTDVDLSGGGYQVVSVSEGTVTFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGKSKTLASVTAEIQYQLLDENSVPYGPIYTAQGTVSGRTPDYNGVTIYADLPVVSRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMTPNTQAVQSLIRLARDPDVGGLNLTVRNMDKLLAVQNEVEAYFGDKQAGEFCYTFDDYKTTMQDIVSTIANAIFCTPYRRGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDAQVFDSLKFSYIDPKTNVKETITIPETGGVKTETYDSKGIRNYKQAFWAAHRRHQKNILKKISVSFTATEEGIFALPNRAVSVVKGSRMATYDGYITAVNGLTVELSQPVKFTAGDDHSLILKLRDGGVQSVNVVPGAHDRQVIMTSVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGSAFSNGFDNGFN
Physico‐chemical
properties
protein length:852 AA
molecular weight: 93759,73070 Da
isoelectric point:5,26280
aromaticity:0,09742
hydropathy:-0,35176

Domains

Domains [InterPro]
DC_0118
STR
1–685
DC_0118 DC_0808
NF040662
Unmapped
352–832
NF040662
AXC39513.1
1 852
Architecture
STR
RBD
STR 1-685 | RBD 703-846 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXC39513.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 230 230 0,9639
Central domain 231 429 200 0,6495
C-terminal 430 852 422 0,1557
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-230
Central
231-429
C-terminal
430-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage S100
[NCBI] 		2231334 Uroviricota > Caudoviricetes > Sarkviridae > Jerseyvirus > Jerseyvirus S100
Host Salmonella enterica serotype Typhimurium LT2
[NCBI] 		1457319 Ascomycota > Sordariomycetes > Xylariales > Xylariaceae > Lopadostoma >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXC39513.1 [NCBI]
Genbank nucleotide accession
MH370358 [NCBI]
CDS location
range 22175 -> 24733
strand +
CDS
TTGGCGCTAGTAATACACTACACACGAAACGAAGACGGCACATTTGACGTCAAACGTTATCGCGATAATCCGATGAACTTCGTCGTGAACCACGTTCCAGACGGGGTGCCGGTTCGCGTTTTCATTGACGAAATCGGGGAAGATAACGACGTAACAGAAGACTTCGAAGCACTGAAAGAAAACGCGACTTTCCACATTGTGGAATCCGCGGGTGGTGGCGCTATTAAAGGCGTCATGAAGATTTTTAGCGTTATTCTTAAACCGTTGGCGAAGCTCTTGTCGCCGTCTGTGAAAGGGGCGTCATCGAACCTTGCGAACTCGCAGGCGGATTCCCCAAACAACAGTCTTACTGACCGTAACAACAAGGCGCGCCCGTACGAGCGCAGCTACGACATCTGCGGGACGGTGCAAACAATACCCAATAACCTTATGTCTACTTATAAGGTGTTCAACGCCGCTGGTAAAATTGTAGAGTACGGCTATTACGACGCCGGGCGCGGCTACCTCGACATCCACCCTGAAGGTATAACGGACGGTGATACCCGGGTATCGGATATAACAGGTACGTCGGTTGCCGTGTACGCACCATATACATCACCCAATAACACATCTACACCGCAGGTCATGGTTGGGGACCCCATAGAGCAAGGCCTATACATTACCGTAGAATCTAACGAAGTTGACGGCGTGGTTCTTAAAGCACCGAACGGTCTGGGCATTTCTTTCTCTTACATGTCCGGGTATCCGTCTTTGTCCGGAAACATTGGCACGATATATGACCCAACAGGTGGTTCGGATTTTTCTGGGGTACTGGTGCCTAATGATACATTTTCGCTGGTGTCAGCGTGGACAAATACGGACGTTGACCTCTCCGGCGGCGGATATCAGGTAGTCAGCGTGTCCGAAGGGACCGTTACCTTTATCGTGCCTGGCGGCCTTATCGGGCGATGGCAAGAAATAAGACCCGGTTCATTTTTCCGCGGTGACGGAGAGGCGTCGCTGCAACCGGATAATACATACGAGAAAACATTAACCGATTGGGTGTCTATAAACCGCACCGAGGTTGAGCGCATAGTCGCCAATATCGCTGCTGCCAATGGCATGTATAAAGACAACGGCAAGTCAAAAACACTGGCATCCGTTACCGCTGAGATACAGTACCAGCTACTTGATGAAAATAGCGTTCCTTACGGGCCAATATACACGGCGCAAGGAACTGTGTCCGGGCGTACACCGGACTACAACGGCGTCACTATTTACGCCGACCTGCCGGTTGTGTCACGGGTTCGGGTGCGCGCCAGAAGGGTGACAGACCTCGACTTTAATTTCGAGGGGTCCGTAGTCGATGAGATAACGTACGTTAACTTATACGGGCAAACACGTGACAACACCCCACACTACGGCAACAGAACAACAGTACACTCGATGCGCAAGCAGACCCCCCGTGCTGCGGAAGTAAAGCAACCGCAGTTGCGTATGATTGCTACTGAAATGGTGTACAAATACCTCGGTAACGGTGTTTTCGAAGATACGATGACACCTAATACACAGGCTGTACAATCCCTCATCCGCCTGGCGCGTGACCCAGATGTGGGCGGTTTAAACCTGACAGTACGCAACATGGATAAGTTACTTGCCGTGCAGAACGAGGTCGAAGCGTATTTTGGTGACAAGCAAGCGGGGGAATTTTGCTACACGTTCGATGACTATAAAACCACTATGCAGGACATAGTTAGTACTATAGCCAACGCTATCTTCTGTACGCCATACAGGCGTGGGGCGGATATCCTTCTCGATTTTGAACGCCCTCGCATGGGCCCCGAGATGGTGTTCACCCACCGAAGCAAGGCTGGTACTTCCGAAAAATGGACCAGAACCTTTAACGATGCTCAGGTTTTTGACAGCCTTAAATTCTCGTACATAGACCCTAAGACGAACGTCAAAGAAACAATAACAATACCAGAAACTGGTGGGGTTAAAACGGAGACCTACGATTCAAAAGGTATTCGCAACTATAAGCAGGCTTTCTGGGCAGCGCACCGCCGCCACCAGAAGAATATTTTAAAGAAAATTTCAGTGTCGTTTACCGCCACGGAAGAGGGTATTTTTGCCCTTCCGAATCGTGCCGTTAGTGTGGTTAAGGGTTCGCGTATGGCTACCTACGATGGCTACATAACCGCAGTAAACGGGCTCACCGTAGAACTGTCACAACCAGTTAAGTTCACAGCGGGAGATGACCATTCTTTGATTCTCAAGTTACGTGATGGTGGAGTGCAAAGTGTTAATGTAGTCCCTGGAGCGCACGACAGGCAGGTGATTATGACTTCTGTACCGCAGGAAGCCATTTACACAGGTAATAGTGCTTTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACGGTAGACCCTGGCGATGACAGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTTGACAACGTACCTCCTTTCGGTAGTGCGTTCTCCAACGGATTCGATAACGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e39513d34a2e3638468f06d21de201e464d651ed30edb404d12065a38716c49b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2930
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genera of bacteriophages and their receptors are the major determinants of host range Gencay,Y.E., Gambino,M., Prussing,T.F. and Brondsted,L. 2019 30888719 GenBank