Phage RBP Database

Genbank accession

XQQ56820.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

Seq2Symm

C1 confidence 0,999

C1	0,999
C2	0,004
C3	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MIDYNGLKTIFGEKLPESHIFFATVAAHKYVPSYAFLRRELGLSSAHTNRKVWKKFVEAYGKAVPPAPPAPPLTLSKDLAASMSVEEGAALTLSVTATGGTGPYTYAWTKDGSPIPDASGATYTKPAAATDDSGVYKVTVTDSKKVSKPSTACTVTVNPGVGG

Physico‐chemical properties

protein length:	163 AA
molecular weight:	17056,17510 Da
isoelectric point:	9,09812
aromaticity:	0,09202
hydropathy:	-0,15215

Domain architecture

XQQ56820.1

1 163 aa

ATT 2–60 · STR 71–158 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR048804
ATT

IPR048804 IPR007110

IPR013783
STR

IPR013783

IPR036179
RBD

IPR036179

IPR003599
STR

IPR003599

PF13927
STR

PF13927

XQQ56820.1

1163 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0400
STR

DC_0400

XQQ56820.1

1163 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR048804	ATT	DC_0698	2	60	InterPro cluster	Decoration protein, N-terminal domain	N-terminal	High	Text match	62 proteins / 62 hits
IPR007110	STR	DC_0008	71	156	InterPro cluster	Immunoglobulin-like domain	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR013783	STR	IPR013783	79	158	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR036179	RBD	IPR036179	79	157	Merged direct domain	Immunoglobulin-like domain superfamily	C-terminal	Low	Positional only	1 proteins / 1 hits
IPR003599	STR	DC_0008	80	156	InterPro cluster	Immunoglobulin domain subtype	C-terminal	Medium	Text match	304 proteins / 473 hits
PF13927	STR	DC_0008	82	141	InterPro cluster	Immunoglobulin domain	C-terminal	Medium	Text match	304 proteins / 473 hits

Proteins with similar domain architecture

Phage

Salmonella phage HMD-P5 [NCBI] · taxon 3400944

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Salmonella sp. [NCBI] · taxon 599

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

XQQ56820.1 [NCBI]

Genbank nucleotide accession

PV016700.1 [NCBI]

CDS location

range 32112 -> 32603
strand +

CDS

ATGATTGATTATAATGGTCTAAAGACCATTTTTGGTGAAAAACTGCCAGAATCTCATATCTTCTTTGCTACGGTTGCTGCGCATAAATATGTTCCTAGCTATGCTTTTCTGCGTAGAGAACTAGGACTTTCATCTGCGCATACTAACCGTAAAGTATGGAAGAAATTTGTAGAGGCTTATGGTAAAGCAGTTCCCCCTGCTCCGCCTGCTCCACCCTTAACTCTTTCTAAAGATTTAGCTGCTAGCATGTCCGTTGAAGAGGGAGCAGCGTTAACCCTTTCTGTTACTGCAACCGGTGGTACTGGTCCATATACTTATGCATGGACTAAAGATGGTTCTCCTATTCCAGATGCTTCAGGAGCTACCTATACTAAGCCTGCAGCAGCTACTGACGATTCTGGCGTCTATAAAGTAACGGTTACAGATAGCAAGAAAGTTAGTAAACCTTCTACTGCATGCACAGTAACGGTTAATCCCGGTGTTGGAGGCTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)