Phage RBP Database

Genbank accession

XEN39396.1 [GenBank]

Protein name

tail fiber protein host specificity

RBP type

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,89

TF

Evidence RBPdetect2

Probability 0,92

Seq2Symm

C1 confidence 0,682

C1	0,682
C2	0,021
I	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MAVVGIPGNIGSSAKAETGQAWMSAAAVQLRLPGSDVWMSQFAGRSKEEIWEWGGANHSFNKDWLIGELRNRGGTPVVINIRADQVSYTPGVPLFEFPGDLPNAYITLNIYATIYGRGGNGSNGSSGGGGGGDCIHNWIGTRLRINNQGWICGGGGGGGGLQINGDPSQGGGGGRPFGLGGTNGYNLNGTNASILSPGAGYNNGYGDVAGNGGDVGNGGGAAHSGTGFYQTAPAGGAGRAVVGTSPQWIATGSIAGSWL

Physico‐chemical properties

protein length:	259 AA
molecular weight:	25901,09450 Da
isoelectric point:	6,26703
aromaticity:	0,08880
hydropathy:	-0,23629

Domain architecture

XEN39396.1

1 259 aa

ATT 1–43 · RBD 48–259

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR048291
ATT

IPR048291 IPR007932

XEN39396.1

1259 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1679
STR

DC_1679

XEN39396.1

1259 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR048291	ATT	DC_0779	1	43	InterPro cluster	Phage tail fibre adhesin Gp38, N-terminal domain	N-terminal	High	Text match	530 proteins / 530 hits
IPR007932	RBD	DC_0283	48	259	InterPro cluster	Receptor-recognising protein Gp38	Central	High	Text match	553 proteins / 553 hits

Proteins with similar domain architecture

Phage

Salmonella phage BP13076 [NCBI] · taxon 3241510

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Salmonella enterica [NCBI] · taxon 28901

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

XEN39396.1 [NCBI]

Genbank nucleotide accession

PQ118624.1 [NCBI]

CDS location

range 94906 -> 95685
strand +

CDS

ATGGCAGTTGTAGGAATTCCAGGAAATATAGGGTCATCCGCTAAAGCAGAAACTGGTCAAGCATGGATGTCAGCAGCAGCAGTACAATTAAGATTGCCTGGTTCCGATGTATGGATGTCACAATTTGCTGGTCGTTCTAAGGAAGAAATCTGGGAATGGGGCGGAGCAAATCATAGTTTTAATAAAGATTGGTTAATAGGAGAACTTCGCAATAGAGGCGGTACTCCAGTAGTAATTAATATAAGAGCGGACCAAGTATCTTATACGCCAGGTGTTCCATTATTTGAATTTCCGGGAGACCTTCCAAACGCTTATATTACGCTCAACATTTATGCTACTATATATGGAAGAGGCGGTAATGGTAGTAATGGTTCTTCCGGCGGCGGTGGTGGCGGTGATTGTATCCATAACTGGATAGGAACTAGACTTAGAATAAACAATCAAGGCTGGATTTGTGGAGGCGGCGGTGGTGGCGGTGGTCTGCAAATCAACGGAGACCCGTCACAAGGCGGCGGTGGCGGCCGACCGTTTGGTCTAGGCGGAACAAACGGATACAATTTGAACGGTACTAATGCATCTATTCTTTCTCCGGGCGCAGGATATAATAACGGATACGGGGACGTCGCGGGTAATGGTGGCGATGTAGGTAATGGTGGCGGCGCCGCGCATTCTGGAACAGGATTTTATCAAACAGCTCCGGCGGGAGGAGCAGGAAGAGCAGTTGTTGGAACATCGCCGCAGTGGATAGCTACCGGTTCGATTGCTGGCTCTTGGTTATAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)