Phage RBP Database

Genbank accession

YP_010076772.1 [GenBank]

Protein name

baseplate wedge tail fiber protein connector

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TSP

Evidence RBPdetect2

Probability 0,59

Seq2Symm

C3 confidence 0,792

C3	0,792
D3	0,476
C1	0,021

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MFIQEPKKLIDTGEIGNASTGDILFDGGNKINSDFNAIYNAFGDQRKMAVANGTGADGQIIHATGYYQKHSITEYATPVKVGTRHDIDTSTVGVKVIIERGELGDCVEFINSNGSISVTNPLTIQAIDSIKGVSGNLVVTAPYSKVTLRCISSDNSTSVWNYSIESMFGQKESPVEGTWNVSTSGSVDIPLFHRTEYNMAKLLVTCQSVDGRKIKTAEINILVDTVNSEVISSEYAVMRVGNETEEDEIANIAFSIKENYVTATISSSTVGMRAAVKVIATQKIGVAQ

Physico‐chemical properties

protein length:	288 AA
molecular weight:	30994,47810 Da
isoelectric point:	5,01044
aromaticity:	0,06597
hydropathy:	-0,10208

Domain architecture

YP_010076772.1

1 288 aa

ATT 1–272 · STR 273–288

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR036240
STR

IPR036240

IPR008987
ATT

IPR008987 IPR056391

G3DSA:1.20.5.960
Unmapped

G3DSA:1.20.5.960 IPR027411 IPR027412

YP_010076772.1

1288 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR036240	STR	IPR036240	1	288	Merged direct domain	Gp9-like superfamily	Central	Low	Positional only	146 proteins / 146 hits
IPR008987	ATT	DC_0752	7	168	InterPro cluster	Baseplate structural protein Gp9/Gp10, N-terminal domain	Central	Medium	Text match	242 proteins / 243 hits
G3DSA:1.20.5.960	Unmapped	-	17	51	Gene3D	Bacteriophage t4 gene product 9 (gp9)	-	-	-	-
IPR027411	Unmapped	-	67	169	InterPro	Baseplate structural protein Gp9/Gp10 middle domain superfamily	-	-	-	-
IPR056391	ATT	DC_0417	169	272	InterPro cluster	Baseplate protein gp9-like, C-terminal	C-terminal	Medium	Text match	98 proteins / 98 hits
IPR027412	Unmapped	-	170	283	InterPro	Baseplate structural protein Gp9 C-terminal domain superfamily	-	-	-	-

Proteins with similar domain architecture

Phage

Shigella phage SH7 [NCBI] · taxon 1913049

Uroviricota Caudoviricetes Pantevenvirales Tevenvirinae Tequatrovirus

Host

Shigella sp. [NCBI] · taxon 625

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YP_010076772.1 [NCBI]

Genbank nucleotide accession

NC_054942 [NCBI]

CDS location

range 82443 -> 83309
strand +

CDS

ATGTTCATTCAAGAACCAAAGAAATTGATTGATACCGGCGAAATTGGTAACGCTTCTACTGGTGATATCTTATTCGACGGTGGTAATAAAATTAATAGTGATTTTAACGCAATTTATAATGCGTTTGGCGATCAGCGTAAAATGGCAGTAGCAAATGGTACTGGTGCTGACGGCCAAATTATCCATGCTACTGGATATTATCAAAAGCATTCTATCACAGAGTACGCAACTCCGGTGAAAGTTGGTACTAGGCATGATATTGATACCTCTACTGTAGGTGTTAAAGTTATCATTGAAAGAGGCGAACTTGGCGACTGTGTTGAATTTATTAACTCAAATGGATCAATATCAGTTACTAATCCTTTAACGATTCAGGCTATTGATTCAATTAAAGGTGTTTCAGGTAATTTGGTAGTAACTGCTCCATATAGTAAAGTTACTTTACGCTGCATTTCATCTGATAATTCTACGTCGGTTTGGAATTATTCTATTGAAAGCATGTTTGGTCAAAAGGAATCACCGGTTGAAGGTACATGGAATGTTTCTACATCCGGATCAGTTGATATTCCACTATTTCATCGCACTGAATACAATATGGCTAAATTGCTAGTTACGTGCCAATCTGTAGATGGAAGAAAAATTAAAACAGCAGAAATAAATATTCTTGTGGATACTGTTAATTCAGAGGTCATTTCTTCTGAATATGCTGTCATGCGAGTTGGGAATGAAACCGAAGAAGACGAAATCGCTAATATTGCATTTAGTATTAAAGAAAATTATGTAACGGCGACTATAAGTTCTTCAACTGTCGGTATGAGAGCAGCAGTTAAAGTTATCGCTACGCAGAAAATCGGGGTGGCTCAATAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)