Protein

View in Explore
Genbank accession
UPW35234.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADAPKTTVTYTLNGTDRDFLIPFEYLARKFVQVTLVGVDRKVLTLNIDYRFTQRTIITTTKGWGPADGYQLIEIRRYTSATERLVDFSDGSILRAYDLNTAQVQSLHIAEEGRDIATDTIGVNNDGDLDARGRKIVNLADGVNDFDAVNLRQQRQWAGSALNQADRSKNEADRATAQANASAGSASNAATSAGSAATSASNAAGSNAAAQAQADRSKNEADRATAQANAATSNGATQVELARQQADRSKNEADRATTQANASTASAAASEASRQAALTQANRATAEADRAKTEADKLANVNALAGAIETVTGLDVRWKGYHEFKQMVQVLGGPSFMPQFRMFHENGQSRAIINDGSNILFHDMNTQRNLAVLDASGGFVVGGALYEGSAANRVWTRTTLPENSLLKGTGTINSKGNYNTVSGVPYQNLTPANQVYNGAFEIRENGLVCMGGPSPGHEYNAPGLTFHWGSAIVKKLFMTTDGHLNWGAHDDSRARLGADGNLYGPVWGGWLSTHLANRFGGKQNPHHFQAGRVGIGAPGGGYRQFRVNFHAPMGSPTVQITIYRPALHVAVIGRGESWVDGIDENGFTCWVHCEAGAQWDAYIDWMASPAVNVSGGGG
Physico‐chemical
properties
protein length:618 AA
molecular weight: 65989,01860 Da
isoelectric point:6,40782
aromaticity:0,07767
hydropathy:-0,41796

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604 Coil Coil Coil G3DSA:6.20.70.20
DC_0657
STR
1–616
DC_0657
UPW35234.1
1 618
Architecture
ATT
STR
ATT 1-131 | STR 132-616 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PCS5
[NCBI] 		2936830 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida NBRC 14164
[NCBI] 		1211579 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas putida

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPW35234.1 [NCBI]
Genbank nucleotide accession
ON109291.1 [NCBI]
CDS location
range 34041 -> 35897
strand +
CDS
ATGGCTGACGCACCAAAGACTACGGTCACCTACACCCTTAACGGGACGGACAGGGACTTCTTGATCCCCTTCGAGTACCTCGCTCGGAAGTTCGTACAGGTGACCCTCGTGGGCGTGGACCGAAAAGTCCTGACCCTCAACATCGACTACCGGTTTACCCAAAGGACGATCATTACGACGACCAAGGGGTGGGGCCCTGCCGATGGCTACCAGTTGATTGAGATCCGCCGCTATACGTCCGCTACGGAGCGTCTGGTGGACTTCAGTGATGGTTCCATTCTGCGTGCATACGACCTCAACACCGCACAGGTCCAGTCCCTTCACATCGCTGAAGAAGGCCGGGACATCGCCACTGATACCATCGGGGTGAACAATGATGGCGACCTTGATGCCCGTGGCCGCAAGATCGTCAACTTGGCAGATGGGGTCAATGACTTCGATGCTGTCAACCTTCGCCAGCAACGGCAATGGGCCGGGTCCGCACTGAACCAAGCAGACCGCTCAAAGAACGAAGCTGACCGGGCAACAGCTCAGGCTAACGCATCCGCTGGTTCCGCAAGCAATGCAGCGACCTCGGCAGGTTCGGCTGCTACCTCGGCTTCCAATGCTGCTGGGTCCAATGCTGCTGCGCAGGCTCAGGCAGACCGCTCAAAGAACGAAGCTGACCGGGCAACAGCTCAGGCCAACGCCGCCACCTCCAACGGTGCTACTCAGGTCGAACTGGCTCGCCAACAGGCTGACCGATCAAAGAACGAAGCTGACCGAGCAACCACGCAGGCAAACGCATCTACTGCTTCGGCCGCTGCCTCTGAGGCGTCCCGTCAGGCAGCGCTTACGCAGGCCAACAGGGCCACAGCAGAAGCTGACAGGGCCAAGACGGAAGCCGATAAGCTGGCCAACGTGAATGCCCTTGCGGGTGCCATAGAGACCGTTACCGGCCTCGATGTGCGCTGGAAGGGCTACCACGAGTTCAAGCAGATGGTCCAAGTGCTGGGCGGCCCGTCCTTCATGCCACAGTTCCGAATGTTCCATGAGAACGGGCAGTCCCGTGCGATCATCAACGATGGCTCGAACATCCTGTTCCACGACATGAACACCCAGCGGAACCTTGCTGTACTTGATGCGTCTGGCGGCTTTGTCGTTGGAGGTGCCCTTTACGAAGGCAGCGCGGCAAACCGAGTGTGGACCCGAACGACCCTACCTGAGAACAGCCTCCTAAAGGGGACCGGCACGATCAACAGCAAGGGCAACTACAACACCGTTTCAGGCGTTCCGTATCAGAACCTGACTCCGGCTAATCAGGTCTATAACGGGGCCTTTGAGATTCGTGAGAATGGGCTGGTATGCATGGGTGGTCCGTCGCCCGGCCACGAGTACAACGCTCCCGGCTTGACCTTCCACTGGGGCTCAGCAATCGTAAAGAAACTCTTCATGACAACTGATGGGCATCTTAACTGGGGTGCGCATGACGACAGTAGGGCACGGCTGGGCGCAGACGGAAACCTCTATGGGCCTGTATGGGGCGGCTGGCTGTCTACCCACCTTGCCAACAGGTTCGGCGGGAAGCAGAACCCTCACCACTTCCAAGCTGGCCGGGTGGGGATTGGTGCTCCGGGTGGCGGATACCGTCAATTCCGCGTGAACTTCCACGCACCTATGGGAAGCCCTACAGTACAAATCACGATCTACCGGCCAGCTCTCCATGTGGCTGTAATTGGCCGTGGTGAGTCGTGGGTGGACGGTATTGACGAAAATGGCTTCACCTGTTGGGTCCACTGCGAAGCTGGTGCCCAATGGGATGCCTACATTGACTGGATGGCCAGCCCTGCCGTGAACGTATCGGGCGGGGGAGGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c617106a82d6ca7dc5a874d8f6d339913ed9060a576f6cd73dd1e3d502f9acae
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7084
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Characterization of Pseudomonas bacteriophages Johno,D., Masuda,Y., Honjoh,K.-I. and Miyamoto,T. 2022-11-12 — GenBank