Phage RBP Database

Genbank accession

XHV16096.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,77

TF

Evidence RBPdetect2

Probability 0,98

Protein sequence

MSDTQVVGKTILELDLLTGQIDAANSYIEVHVVGQLGSVKVPLGGVTTDGKSAYQVAQAAGYPGTQAQWLASLQGQNGKSAYQSALDQGFVGTESAWVTSLKGAKGDPGNQGVQGVQGQSAYQAAVAGGFVGDITAWLASLKGVKGDTGNTGADGQSAYAAAVAGGFAGTQAQWLASLKGADGAVGKSAYQTAVDDGFVGDETAWLLSLHGASAYQDAVTNGFVGNLTTWLASLKGPKGDQGAVGPAGQTAVLGHLVGAVSTSADLPDVSGFEQADYFMVGTHIWMNLNGEWTDMGNFQGIPGQDGSGITVLGELPSPDYLPVSGARNGDSWLIGKVMYVWNGTDWQLQGQEGLQGPVGPQGPQGVAGQSAWDVIRSAHPEVNTVDLFAAYIKGAKGDKGDAAISFVVDGTVATVADLPATGTQNHGYLVGTAPNFNFWVWVNTQFVNMGNNAGPQGPQGIQGVQGSPGVAGKMTPKGNVANVGALPASGNQLGDAYGVAGHLYSWDGAAWQDLGNFMGAQGATGATGPVGQPVNAKGSVAAVANLPASGNANGDAYEVNGFIYVWNSTSAQWVNMGQWRGANGTNGTNGTNGLSAYQQAQAAGFAGSVTEWLASLKGADGVSFTYIGQFANAAALPAGTHTGAAATTADTNHIYLWVAGSNWVDNGPIGVQGPQGFQGIQGVAGKSAYQVAVDGGFAGDVTAWLASLKGLQGDSAYTVAVQQGFAGTKAQWLASLVGPQGAQGIQGIQGVQGVQGNTGPSGTSLAYIGDFANSGAIPAGTLSQVATAGGHIFINNGTTWVDAGPVAQGPQGIQGIQGVQGNTGATGQSAYQAAVAGGFVGTQAAWLQSLVGPAGDSAVQAAIKSGLLPSGATITDYVTLTTGPRGPAGADGATGPQGQTGPAISIIGTLSDSSQLPGTGTAGTGYAIPDSGTPGTYNCWIWLTTTSQWFNLGHVVGAQGPQGIQGLRGLQGLTGAQGPQGPQGTIWIVFARNPQALDGRVGDYFFNSNTQEFFTKTDTATWASLGHIGGGNLNAPSQTGKYQGYNDSGWVNLPDVVNVLPPNDGKKYLLVNGEWTLGSNVINAIPTDNTGKVYALSNGAWVEQALLDTIPVDSGTYILKSGVWTRLDTYTLKAVDVAITGGVATCDLSVARTFRIQNTAAAAVTMTNLPASDRTTTVIVKIYGKTNAFTWTNTIRWFDGSAPPLTNSTTTVVLNWDGTEWVGSVPN

Physico‐chemical properties

protein length:	1227 AA
molecular weight:	124585,10390 Da
isoelectric point:	4,60677
aromaticity:	0,08720
hydropathy:	-0,06618

Domain architecture

XHV16096.1

1 1227 aa

STR 736–781 · STR 957–1003 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR050149
Unmapped

IPR050149

G3DSA:1.20.5.320
STR

G3DSA:1.20.5.320 G3DSA:1.20.5.320

XHV16096.1

11227 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1967
ATT

DC_1967 DC_0108 DC_2121 DC_2298 DC_0582 DC_1473 DC_0449

DC_1725
STR

DC_1725 DC_1967 DC_1473 DC_1340 DC_1158

XHV16096.1

11227 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR050149	Unmapped	-	60	992	InterPro	Collagen superfamily	-	-	-	-
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	736	781	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	957	1003	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits

Proteins with similar domain architecture

Phage

Ralstonia phage RsoM3USA [NCBI] · taxon 3349224

Viruses

Host

Ralstonia solanacearum [NCBI] · taxon 305

cellular organisms Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales

Genbank protein accession

XHV16096.1 [NCBI]

Genbank nucleotide accession

PQ309151.1 [NCBI]

CDS location

range 108426 -> 112109
strand -

CDS

ATGTCGGATACTCAAGTGGTGGGTAAAACCATCCTCGAACTCGACCTGCTGACTGGCCAGATCGACGCTGCGAATTCGTACATCGAAGTCCATGTTGTCGGGCAGCTTGGCAGTGTGAAGGTTCCCCTGGGCGGTGTGACCACAGACGGTAAGTCGGCCTATCAGGTCGCACAGGCTGCTGGTTACCCCGGTACTCAGGCACAGTGGTTGGCAAGTCTCCAAGGGCAGAACGGTAAGTCCGCTTACCAGTCGGCTCTTGATCAAGGCTTCGTGGGTACCGAAAGCGCCTGGGTTACATCGCTCAAGGGAGCGAAGGGCGACCCAGGCAATCAAGGTGTCCAAGGCGTCCAGGGTCAAAGCGCGTATCAGGCAGCTGTGGCAGGTGGTTTCGTCGGCGACATCACTGCATGGCTCGCTAGCCTCAAAGGTGTAAAGGGTGATACCGGTAACACCGGTGCTGATGGTCAATCTGCTTACGCTGCTGCGGTGGCTGGTGGATTCGCCGGAACCCAGGCCCAATGGTTGGCTTCGCTCAAAGGCGCCGATGGCGCTGTTGGCAAGTCGGCTTATCAGACGGCAGTCGACGATGGTTTCGTTGGTGATGAAACCGCATGGTTGCTGTCGCTGCACGGCGCGTCTGCCTATCAGGATGCAGTCACCAATGGTTTCGTGGGTAATCTCACGACCTGGCTGGCAAGCCTGAAGGGTCCCAAGGGCGACCAAGGTGCTGTAGGTCCCGCAGGTCAGACTGCAGTGCTGGGTCACCTGGTTGGCGCTGTCTCGACTTCGGCAGATCTGCCGGATGTCTCGGGCTTCGAACAAGCTGACTACTTCATGGTCGGCACGCACATCTGGATGAACCTGAACGGTGAATGGACCGACATGGGTAACTTCCAGGGTATTCCGGGTCAAGACGGCTCGGGTATCACTGTGCTGGGCGAATTGCCTTCGCCTGACTACCTGCCTGTCTCGGGTGCCCGCAATGGCGACTCGTGGCTGATCGGTAAGGTCATGTACGTGTGGAACGGTACCGACTGGCAGCTGCAGGGTCAGGAAGGTCTCCAAGGTCCCGTGGGTCCGCAAGGTCCTCAGGGCGTTGCCGGCCAATCCGCATGGGATGTAATCCGAAGCGCTCATCCGGAAGTCAACACAGTCGACCTCTTCGCTGCTTACATCAAGGGCGCAAAGGGCGACAAGGGCGATGCAGCTATTTCGTTCGTCGTTGATGGTACGGTTGCTACAGTGGCTGATCTGCCTGCAACTGGCACTCAGAACCATGGTTACCTGGTCGGCACTGCGCCGAACTTCAACTTCTGGGTCTGGGTGAACACGCAGTTCGTCAACATGGGTAACAACGCAGGCCCGCAAGGCCCGCAAGGTATCCAAGGCGTTCAAGGCAGCCCCGGTGTCGCCGGTAAGATGACGCCGAAGGGTAACGTCGCAAACGTCGGCGCGCTTCCTGCTTCGGGTAACCAGCTGGGTGACGCATATGGCGTGGCGGGTCATCTGTACTCGTGGGATGGTGCTGCCTGGCAAGATCTCGGCAACTTCATGGGCGCTCAAGGCGCTACTGGTGCTACGGGTCCTGTGGGTCAACCTGTCAACGCAAAGGGTTCTGTCGCTGCTGTGGCAAACCTCCCAGCTTCGGGCAACGCCAATGGCGATGCTTATGAAGTTAATGGCTTCATCTACGTGTGGAATTCGACTTCCGCGCAGTGGGTGAACATGGGTCAATGGCGTGGTGCGAATGGCACGAACGGTACGAATGGTACCAACGGCCTGAGCGCTTACCAACAGGCTCAAGCAGCTGGTTTCGCAGGTTCGGTCACGGAATGGCTGGCTTCGCTCAAGGGTGCGGATGGCGTGAGCTTCACGTACATCGGTCAGTTCGCGAATGCTGCTGCTCTGCCGGCTGGTACCCATACCGGTGCTGCTGCTACCACCGCAGACACGAACCACATTTACCTGTGGGTCGCAGGTAGCAACTGGGTCGATAACGGTCCGATCGGCGTGCAAGGTCCGCAAGGCTTCCAGGGTATTCAAGGTGTTGCTGGTAAATCGGCATACCAGGTTGCTGTGGACGGCGGCTTCGCTGGCGATGTTACGGCATGGCTTGCGTCGCTGAAGGGTCTGCAGGGCGATTCGGCTTACACGGTTGCAGTCCAGCAAGGTTTCGCTGGTACGAAGGCCCAGTGGCTCGCATCGCTCGTCGGTCCTCAAGGAGCCCAAGGTATTCAGGGTATCCAAGGCGTCCAGGGCGTTCAGGGTAATACCGGTCCGTCTGGTACGTCGCTTGCCTACATCGGCGATTTCGCAAACTCCGGTGCGATCCCGGCTGGTACGTTGTCCCAAGTGGCAACTGCTGGCGGACACATCTTTATCAACAACGGTACGACCTGGGTGGACGCAGGTCCAGTTGCTCAAGGTCCTCAGGGTATTCAGGGGATTCAAGGTGTCCAAGGTAACACTGGCGCAACTGGCCAAAGCGCATACCAAGCAGCCGTCGCTGGCGGATTTGTGGGTACGCAAGCCGCCTGGCTCCAAAGCCTCGTCGGTCCTGCCGGCGATTCTGCAGTCCAGGCCGCAATCAAATCAGGACTCCTCCCCTCAGGAGCCACCATCACCGACTACGTCACCCTGACGACTGGTCCGCGAGGTCCCGCAGGTGCTGATGGTGCAACTGGTCCGCAAGGCCAGACTGGTCCGGCGATCTCGATCATCGGTACGCTGTCCGATTCCTCGCAACTCCCGGGAACGGGTACGGCAGGTACGGGTTATGCGATTCCTGATTCGGGTACGCCTGGCACTTACAACTGCTGGATCTGGTTGACGACCACGTCGCAGTGGTTCAACCTCGGTCACGTGGTTGGTGCTCAAGGCCCGCAGGGTATTCAAGGTCTGCGTGGTCTGCAAGGTCTCACGGGTGCTCAAGGTCCGCAAGGTCCGCAGGGTACGATCTGGATCGTGTTCGCACGCAATCCGCAAGCCCTCGATGGTCGCGTTGGCGATTACTTCTTCAACAGCAACACGCAGGAATTCTTCACCAAGACCGACACGGCAACGTGGGCCTCGCTGGGCCATATCGGTGGTGGGAACCTGAATGCTCCGTCGCAAACGGGCAAGTATCAGGGCTACAACGATTCCGGCTGGGTCAACCTGCCTGACGTTGTGAACGTTCTCCCGCCCAACGACGGCAAGAAGTATTTGCTGGTCAACGGCGAGTGGACGCTGGGCTCGAATGTCATCAACGCGATTCCGACCGACAACACCGGCAAAGTGTACGCTCTGTCGAATGGCGCGTGGGTGGAACAAGCCCTGCTCGATACGATCCCGGTTGACTCGGGCACGTACATCCTCAAGAGCGGTGTCTGGACTCGTCTGGATACCTATACCTTGAAGGCTGTCGACGTGGCGATCACGGGCGGTGTGGCTACGTGTGACCTTTCGGTTGCGCGTACGTTCCGCATCCAGAACACGGCAGCCGCAGCGGTCACCATGACCAACCTGCCGGCATCCGACCGTACGACCACTGTGATCGTCAAAATCTACGGGAAGACGAACGCCTTCACGTGGACCAATACGATCCGCTGGTTCGATGGCTCGGCGCCTCCGCTGACCAACAGCACGACCACCGTTGTCCTGAACTGGGACGGTACGGAATGGGTCGGCTCGGTTCCGAACTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)