Phage RBP Database

Genbank accession

XHV16096.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,77

TF

Evidence RBPdetect2

Probability 0,98

Seq2Symm

C1 confidence 0,993 truncated

C1	0,993
C3	0,007
C2	0,004

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSDTQVVGKTILELDLLTGQIDAANSYIEVHVVGQLGSVKVPLGGVTTDGKSAYQVAQAAGYPGTQAQWLASLQGQNGKSAYQSALDQGFVGTESAWVTSLKGAKGDPGNQGVQGVQGQSAYQAAVAGGFVGDITAWLASLKGVKGDTGNTGADGQSAYAAAVAGGFAGTQAQWLASLKGADGAVGKSAYQTAVDDGFVGDETAWLLSLHGASAYQDAVTNGFVGNLTTWLASLKGPKGDQGAVGPAGQTAVLGHLVGAVSTSADLPDVSGFEQADYFMVGTHIWMNLNGEWTDMGNFQGIPGQDGSGITVLGELPSPDYLPVSGARNGDSWLIGKVMYVWNGTDWQLQGQEGLQGPVGPQGPQGVAGQSAWDVIRSAHPEVNTVDLFAAYIKGAKGDKGDAAISFVVDGTVATVADLPATGTQNHGYLVGTAPNFNFWVWVNTQFVNMGNNAGPQGPQGIQGVQGSPGVAGKMTPKGNVANVGALPASGNQLGDAYGVAGHLYSWDGAAWQDLGNFMGAQGATGATGPVGQPVNAKGSVAAVANLPASGNANGDAYEVNGFIYVWNSTSAQWVNMGQWRGANGTNGTNGTNGLSAYQQAQAAGFAGSVTEWLASLKGADGVSFTYIGQFANAAALPAGTHTGAAATTADTNHIYLWVAGSNWVDNGPIGVQGPQGFQGIQGVAGKSAYQVAVDGGFAGDVTAWLASLKGLQGDSAYTVAVQQGFAGTKAQWLASLVGPQGAQGIQGIQGVQGVQGNTGPSGTSLAYIGDFANSGAIPAGTLSQVATAGGHIFINNGTTWVDAGPVAQGPQGIQGIQGVQGNTGATGQSAYQAAVAGGFVGTQAAWLQSLVGPAGDSAVQAAIKSGLLPSGATITDYVTLTTGPRGPAGADGATGPQGQTGPAISIIGTLSDSSQLPGTGTAGTGYAIPDSGTPGTYNCWIWLTTTSQWFNLGHVVGAQGPQGIQGLRGLQGLTGAQGPQGPQGTIWIVFARNPQALDGRVGDYFFNSNTQEFFTKTDTATWASLGHIGGGNLNAPSQTGKYQGYNDSGWVNLPDVVNVLPPNDGKKYLLVNGEWTLGSNVINAIPTDNTGKVYALSNGAWVEQALLDTIPVDSGTYILKSGVWTRLDTYTLKAVDVAITGGVATCDLSVARTFRIQNTAAAAVTMTNLPASDRTTTVIVKIYGKTNAFTWTNTIRWFDGSAPPLTNSTTTVVLNWDGTEWVGSVPN

Physico‐chemical properties

protein length:	1227 AA
molecular weight:	124585,10390 Da
isoelectric point:	4,60677
aromaticity:	0,08720
hydropathy:	-0,06618

Domain architecture

XHV16096.1

1 1227 aa

STR 736–781 · STR 957–1003 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR050149
Unmapped

IPR050149

G3DSA:1.20.5.320
STR

G3DSA:1.20.5.320 G3DSA:1.20.5.320

XHV16096.1

11227 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1967
ATT

DC_1967 DC_0108 DC_2121 DC_2298 DC_0582 DC_1473 DC_0449

DC_1725
STR

DC_1725 DC_1967 DC_1473 DC_1340 DC_1158

XHV16096.1

11227 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR050149	Unmapped	-	60	992	InterPro	Collagen superfamily	-	-	-	-
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	736	781	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	957	1003	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits

Proteins with similar domain architecture

Phage

Ralstonia phage RsoM3USA [NCBI] · taxon 3349224

Viruses

Host

Ralstonia solanacearum [NCBI] · taxon 305

cellular organisms Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales

Genbank protein accession

XHV16096.1 [NCBI]

Genbank nucleotide accession

PQ309151.1 [NCBI]

CDS location

range 108426 -> 112109
strand -

CDS

ATGTCGGATACTCAAGTGGTGGGTAAAACCATCCTCGAACTCGACCTGCTGACTGGCCAGATCGACGCTGCGAATTCGTACATCGAAGTCCATGTTGTCGGGCAGCTTGGCAGTGTGAAGGTTCCCCTGGGCGGTGTGACCACAGACGGTAAGTCGGCCTATCAGGTCGCACAGGCTGCTGGTTACCCCGGTACTCAGGCACAGTGGTTGGCAAGTCTCCAAGGGCAGAACGGTAAGTCCGCTTACCAGTCGGCTCTTGATCAAGGCTTCGTGGGTACCGAAAGCGCCTGGGTTACATCGCTCAAGGGAGCGAAGGGCGACCCAGGCAATCAAGGTGTCCAAGGCGTCCAGGGTCAAAGCGCGTATCAGGCAGCTGTGGCAGGTGGTTTCGTCGGCGACATCACTGCATGGCTCGCTAGCCTCAAAGGTGTAAAGGGTGATACCGGTAACACCGGTGCTGATGGTCAATCTGCTTACGCTGCTGCGGTGGCTGGTGGATTCGCCGGAACCCAGGCCCAATGGTTGGCTTCGCTCAAAGGCGCCGATGGCGCTGTTGGCAAGTCGGCTTATCAGACGGCAGTCGACGATGGTTTCGTTGGTGATGAAACCGCATGGTTGCTGTCGCTGCACGGCGCGTCTGCCTATCAGGATGCAGTCACCAATGGTTTCGTGGGTAATCTCACGACCTGGCTGGCAAGCCTGAAGGGTCCCAAGGGCGACCAAGGTGCTGTAGGTCCCGCAGGTCAGACTGCAGTGCTGGGTCACCTGGTTGGCGCTGTCTCGACTTCGGCAGATCTGCCGGATGTCTCGGGCTTCGAACAAGCTGACTACTTCATGGTCGGCACGCACATCTGGATGAACCTGAACGGTGAATGGACCGACATGGGTAACTTCCAGGGTATTCCGGGTCAAGACGGCTCGGGTATCACTGTGCTGGGCGAATTGCCTTCGCCTGACTACCTGCCTGTCTCGGGTGCCCGCAATGGCGACTCGTGGCTGATCGGTAAGGTCATGTACGTGTGGAACGGTACCGACTGGCAGCTGCAGGGTCAGGAAGGTCTCCAAGGTCCCGTGGGTCCGCAAGGTCCTCAGGGCGTTGCCGGCCAATCCGCATGGGATGTAATCCGAAGCGCTCATCCGGAAGTCAACACAGTCGACCTCTTCGCTGCTTACATCAAGGGCGCAAAGGGCGACAAGGGCGATGCAGCTATTTCGTTCGTCGTTGATGGTACGGTTGCTACAGTGGCTGATCTGCCTGCAACTGGCACTCAGAACCATGGTTACCTGGTCGGCACTGCGCCGAACTTCAACTTCTGGGTCTGGGTGAACACGCAGTTCGTCAACATGGGTAACAACGCAGGCCCGCAAGGCCCGCAAGGTATCCAAGGCGTTCAAGGCAGCCCCGGTGTCGCCGGTAAGATGACGCCGAAGGGTAACGTCGCAAACGTCGGCGCGCTTCCTGCTTCGGGTAACCAGCTGGGTGACGCATATGGCGTGGCGGGTCATCTGTACTCGTGGGATGGTGCTGCCTGGCAAGATCTCGGCAACTTCATGGGCGCTCAAGGCGCTACTGGTGCTACGGGTCCTGTGGGTCAACCTGTCAACGCAAAGGGTTCTGTCGCTGCTGTGGCAAACCTCCCAGCTTCGGGCAACGCCAATGGCGATGCTTATGAAGTTAATGGCTTCATCTACGTGTGGAATTCGACTTCCGCGCAGTGGGTGAACATGGGTCAATGGCGTGGTGCGAATGGCACGAACGGTACGAATGGTACCAACGGCCTGAGCGCTTACCAACAGGCTCAAGCAGCTGGTTTCGCAGGTTCGGTCACGGAATGGCTGGCTTCGCTCAAGGGTGCGGATGGCGTGAGCTTCACGTACATCGGTCAGTTCGCGAATGCTGCTGCTCTGCCGGCTGGTACCCATACCGGTGCTGCTGCTACCACCGCAGACACGAACCACATTTACCTGTGGGTCGCAGGTAGCAACTGGGTCGATAACGGTCCGATCGGCGTGCAAGGTCCGCAAGGCTTCCAGGGTATTCAAGGTGTTGCTGGTAAATCGGCATACCAGGTTGCTGTGGACGGCGGCTTCGCTGGCGATGTTACGGCATGGCTTGCGTCGCTGAAGGGTCTGCAGGGCGATTCGGCTTACACGGTTGCAGTCCAGCAAGGTTTCGCTGGTACGAAGGCCCAGTGGCTCGCATCGCTCGTCGGTCCTCAAGGAGCCCAAGGTATTCAGGGTATCCAAGGCGTCCAGGGCGTTCAGGGTAATACCGGTCCGTCTGGTACGTCGCTTGCCTACATCGGCGATTTCGCAAACTCCGGTGCGATCCCGGCTGGTACGTTGTCCCAAGTGGCAACTGCTGGCGGACACATCTTTATCAACAACGGTACGACCTGGGTGGACGCAGGTCCAGTTGCTCAAGGTCCTCAGGGTATTCAGGGGATTCAAGGTGTCCAAGGTAACACTGGCGCAACTGGCCAAAGCGCATACCAAGCAGCCGTCGCTGGCGGATTTGTGGGTACGCAAGCCGCCTGGCTCCAAAGCCTCGTCGGTCCTGCCGGCGATTCTGCAGTCCAGGCCGCAATCAAATCAGGACTCCTCCCCTCAGGAGCCACCATCACCGACTACGTCACCCTGACGACTGGTCCGCGAGGTCCCGCAGGTGCTGATGGTGCAACTGGTCCGCAAGGCCAGACTGGTCCGGCGATCTCGATCATCGGTACGCTGTCCGATTCCTCGCAACTCCCGGGAACGGGTACGGCAGGTACGGGTTATGCGATTCCTGATTCGGGTACGCCTGGCACTTACAACTGCTGGATCTGGTTGACGACCACGTCGCAGTGGTTCAACCTCGGTCACGTGGTTGGTGCTCAAGGCCCGCAGGGTATTCAAGGTCTGCGTGGTCTGCAAGGTCTCACGGGTGCTCAAGGTCCGCAAGGTCCGCAGGGTACGATCTGGATCGTGTTCGCACGCAATCCGCAAGCCCTCGATGGTCGCGTTGGCGATTACTTCTTCAACAGCAACACGCAGGAATTCTTCACCAAGACCGACACGGCAACGTGGGCCTCGCTGGGCCATATCGGTGGTGGGAACCTGAATGCTCCGTCGCAAACGGGCAAGTATCAGGGCTACAACGATTCCGGCTGGGTCAACCTGCCTGACGTTGTGAACGTTCTCCCGCCCAACGACGGCAAGAAGTATTTGCTGGTCAACGGCGAGTGGACGCTGGGCTCGAATGTCATCAACGCGATTCCGACCGACAACACCGGCAAAGTGTACGCTCTGTCGAATGGCGCGTGGGTGGAACAAGCCCTGCTCGATACGATCCCGGTTGACTCGGGCACGTACATCCTCAAGAGCGGTGTCTGGACTCGTCTGGATACCTATACCTTGAAGGCTGTCGACGTGGCGATCACGGGCGGTGTGGCTACGTGTGACCTTTCGGTTGCGCGTACGTTCCGCATCCAGAACACGGCAGCCGCAGCGGTCACCATGACCAACCTGCCGGCATCCGACCGTACGACCACTGTGATCGTCAAAATCTACGGGAAGACGAACGCCTTCACGTGGACCAATACGATCCGCTGGTTCGATGGCTCGGCGCCTCCGCTGACCAACAGCACGACCACCGTTGTCCTGAACTGGGACGGTACGGAATGGGTCGGCTCGGTTCCGAACTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)