Protein

View in Explore

Genbank accession

XHV16096.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence RBPdetect

Probability 0,77

Evidence RBPdetect2

Probability 0,96

Protein sequence

MSDTQVVGKTILELDLLTGQIDAANSYIEVHVVGQLGSVKVPLGGVTTDGKSAYQVAQAAGYPGTQAQWLASLQGQNGKSAYQSALDQGFVGTESAWVTSLKGAKGDPGNQGVQGVQGQSAYQAAVAGGFVGDITAWLASLKGVKGDTGNTGADGQSAYAAAVAGGFAGTQAQWLASLKGADGAVGKSAYQTAVDDGFVGDETAWLLSLHGASAYQDAVTNGFVGNLTTWLASLKGPKGDQGAVGPAGQTAVLGHLVGAVSTSADLPDVSGFEQADYFMVGTHIWMNLNGEWTDMGNFQGIPGQDGSGITVLGELPSPDYLPVSGARNGDSWLIGKVMYVWNGTDWQLQGQEGLQGPVGPQGPQGVAGQSAWDVIRSAHPEVNTVDLFAAYIKGAKGDKGDAAISFVVDGTVATVADLPATGTQNHGYLVGTAPNFNFWVWVNTQFVNMGNNAGPQGPQGIQGVQGSPGVAGKMTPKGNVANVGALPASGNQLGDAYGVAGHLYSWDGAAWQDLGNFMGAQGATGATGPVGQPVNAKGSVAAVANLPASGNANGDAYEVNGFIYVWNSTSAQWVNMGQWRGANGTNGTNGTNGLSAYQQAQAAGFAGSVTEWLASLKGADGVSFTYIGQFANAAALPAGTHTGAAATTADTNHIYLWVAGSNWVDNGPIGVQGPQGFQGIQGVAGKSAYQVAVDGGFAGDVTAWLASLKGLQGDSAYTVAVQQGFAGTKAQWLASLVGPQGAQGIQGIQGVQGVQGNTGPSGTSLAYIGDFANSGAIPAGTLSQVATAGGHIFINNGTTWVDAGPVAQGPQGIQGIQGVQGNTGATGQSAYQAAVAGGFVGTQAAWLQSLVGPAGDSAVQAAIKSGLLPSGATITDYVTLTTGPRGPAGADGATGPQGQTGPAISIIGTLSDSSQLPGTGTAGTGYAIPDSGTPGTYNCWIWLTTTSQWFNLGHVVGAQGPQGIQGLRGLQGLTGAQGPQGPQGTIWIVFARNPQALDGRVGDYFFNSNTQEFFTKTDTATWASLGHIGGGNLNAPSQTGKYQGYNDSGWVNLPDVVNVLPPNDGKKYLLVNGEWTLGSNVINAIPTDNTGKVYALSNGAWVEQALLDTIPVDSGTYILKSGVWTRLDTYTLKAVDVAITGGVATCDLSVARTFRIQNTAAAAVTMTNLPASDRTTTVIVKIYGKTNAFTWTNTIRWFDGSAPPLTNSTTTVVLNWDGTEWVGSVPN

Physico‐chemical properties

protein length:	1227 AA
molecular weight:	124585,10390 Da
isoelectric point:	4,60677
aromaticity:	0,08720
hydropathy:	-0,06618

Domains

Domains [InterPro]

DC_1967
ATT
3–79

DC_1967 DC_0108 DC_2121 DC_2298 DC_0582 G3DSA:1.20.5.320 G3DSA:1.20.5.320

IPR050149
Unmapped
60–992

IPR050149

DC_1725
STR
74–118

DC_1725 DC_1967 DC_1473 DC_1340 DC_1158 DC_0449

DC_1473
STR
780–955

DC_1473

XHV16096.1

1 1227

Architecture

ATT

STR

ATT

STR

RBD

ATT 3-79 | STR 80-142 | ATT 143-212 | STR 213-955 | STR 957-1003 | RBD 1004-1227

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1967	ATT	DC_1967	3	79	Novel HMM	DC_1967	N-terminal	Low	Positional only	47 proteins / 47 hits
IPR050149	Unmapped	-	60	992	InterPro	Collagen superfamily	-	-	-	-
DC_1725	STR	DC_1725	74	118	Novel HMM	DC_1725	Central	Low	Positional only	85 proteins / 85 hits
DC_0108	STR	DC_0108	106	155	Novel HMM	DC_0108	Central	Low	Positional only	22 proteins / 22 hits
DC_1967	ATT	DC_1967	143	186	Novel HMM	DC_1967	N-terminal	Low	Positional only	47 proteins / 47 hits
DC_2121	ATT	DC_2121	179	212	Novel HMM	DC_2121	N-terminal	Low	Positional only	48 proteins / 48 hits
DC_1473	STR	DC_1473	210	331	Novel HMM	DC_1473	Central	Low	Positional only	59 proteins / 59 hits
DC_2298	STR	DC_2298	309	405	Novel HMM	DC_2298	Central	Low	Positional only	339 proteins / 339 hits
DC_1340	STR	DC_1340	389	477	Novel HMM	DC_1340	Central	Low	Positional only	192 proteins / 192 hits
DC_0582	STR	DC_0582	475	524	Novel HMM	DC_0582	Central	Low	Positional only	49 proteins / 49 hits
DC_1158	STR	DC_1158	512	818	Novel HMM	DC_1158	Central	Low	Positional only	8 proteins / 8 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	736	781	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
DC_1473	STR	DC_1473	780	955	Novel HMM	DC_1473	Central	Low	Positional only	59 proteins / 59 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	957	1003	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
DC_0449	RBD	DC_0449	971	1227	Novel HMM	DC_0449	C-terminal	Low	Positional only	30 proteins / 30 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Ralstonia phage RsoM3USA [NCBI]	3349224	Viruses >
Host	Ralstonia solanacearum [NCBI]	305	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Genbank protein accession

XHV16096.1 [NCBI]

Genbank nucleotide accession

PQ309151.1 [NCBI]

CDS location

range 108426 -> 112109
strand -

CDS

ATGTCGGATACTCAAGTGGTGGGTAAAACCATCCTCGAACTCGACCTGCTGACTGGCCAGATCGACGCTGCGAATTCGTACATCGAAGTCCATGTTGTCGGGCAGCTTGGCAGTGTGAAGGTTCCCCTGGGCGGTGTGACCACAGACGGTAAGTCGGCCTATCAGGTCGCACAGGCTGCTGGTTACCCCGGTACTCAGGCACAGTGGTTGGCAAGTCTCCAAGGGCAGAACGGTAAGTCCGCTTACCAGTCGGCTCTTGATCAAGGCTTCGTGGGTACCGAAAGCGCCTGGGTTACATCGCTCAAGGGAGCGAAGGGCGACCCAGGCAATCAAGGTGTCCAAGGCGTCCAGGGTCAAAGCGCGTATCAGGCAGCTGTGGCAGGTGGTTTCGTCGGCGACATCACTGCATGGCTCGCTAGCCTCAAAGGTGTAAAGGGTGATACCGGTAACACCGGTGCTGATGGTCAATCTGCTTACGCTGCTGCGGTGGCTGGTGGATTCGCCGGAACCCAGGCCCAATGGTTGGCTTCGCTCAAAGGCGCCGATGGCGCTGTTGGCAAGTCGGCTTATCAGACGGCAGTCGACGATGGTTTCGTTGGTGATGAAACCGCATGGTTGCTGTCGCTGCACGGCGCGTCTGCCTATCAGGATGCAGTCACCAATGGTTTCGTGGGTAATCTCACGACCTGGCTGGCAAGCCTGAAGGGTCCCAAGGGCGACCAAGGTGCTGTAGGTCCCGCAGGTCAGACTGCAGTGCTGGGTCACCTGGTTGGCGCTGTCTCGACTTCGGCAGATCTGCCGGATGTCTCGGGCTTCGAACAAGCTGACTACTTCATGGTCGGCACGCACATCTGGATGAACCTGAACGGTGAATGGACCGACATGGGTAACTTCCAGGGTATTCCGGGTCAAGACGGCTCGGGTATCACTGTGCTGGGCGAATTGCCTTCGCCTGACTACCTGCCTGTCTCGGGTGCCCGCAATGGCGACTCGTGGCTGATCGGTAAGGTCATGTACGTGTGGAACGGTACCGACTGGCAGCTGCAGGGTCAGGAAGGTCTCCAAGGTCCCGTGGGTCCGCAAGGTCCTCAGGGCGTTGCCGGCCAATCCGCATGGGATGTAATCCGAAGCGCTCATCCGGAAGTCAACACAGTCGACCTCTTCGCTGCTTACATCAAGGGCGCAAAGGGCGACAAGGGCGATGCAGCTATTTCGTTCGTCGTTGATGGTACGGTTGCTACAGTGGCTGATCTGCCTGCAACTGGCACTCAGAACCATGGTTACCTGGTCGGCACTGCGCCGAACTTCAACTTCTGGGTCTGGGTGAACACGCAGTTCGTCAACATGGGTAACAACGCAGGCCCGCAAGGCCCGCAAGGTATCCAAGGCGTTCAAGGCAGCCCCGGTGTCGCCGGTAAGATGACGCCGAAGGGTAACGTCGCAAACGTCGGCGCGCTTCCTGCTTCGGGTAACCAGCTGGGTGACGCATATGGCGTGGCGGGTCATCTGTACTCGTGGGATGGTGCTGCCTGGCAAGATCTCGGCAACTTCATGGGCGCTCAAGGCGCTACTGGTGCTACGGGTCCTGTGGGTCAACCTGTCAACGCAAAGGGTTCTGTCGCTGCTGTGGCAAACCTCCCAGCTTCGGGCAACGCCAATGGCGATGCTTATGAAGTTAATGGCTTCATCTACGTGTGGAATTCGACTTCCGCGCAGTGGGTGAACATGGGTCAATGGCGTGGTGCGAATGGCACGAACGGTACGAATGGTACCAACGGCCTGAGCGCTTACCAACAGGCTCAAGCAGCTGGTTTCGCAGGTTCGGTCACGGAATGGCTGGCTTCGCTCAAGGGTGCGGATGGCGTGAGCTTCACGTACATCGGTCAGTTCGCGAATGCTGCTGCTCTGCCGGCTGGTACCCATACCGGTGCTGCTGCTACCACCGCAGACACGAACCACATTTACCTGTGGGTCGCAGGTAGCAACTGGGTCGATAACGGTCCGATCGGCGTGCAAGGTCCGCAAGGCTTCCAGGGTATTCAAGGTGTTGCTGGTAAATCGGCATACCAGGTTGCTGTGGACGGCGGCTTCGCTGGCGATGTTACGGCATGGCTTGCGTCGCTGAAGGGTCTGCAGGGCGATTCGGCTTACACGGTTGCAGTCCAGCAAGGTTTCGCTGGTACGAAGGCCCAGTGGCTCGCATCGCTCGTCGGTCCTCAAGGAGCCCAAGGTATTCAGGGTATCCAAGGCGTCCAGGGCGTTCAGGGTAATACCGGTCCGTCTGGTACGTCGCTTGCCTACATCGGCGATTTCGCAAACTCCGGTGCGATCCCGGCTGGTACGTTGTCCCAAGTGGCAACTGCTGGCGGACACATCTTTATCAACAACGGTACGACCTGGGTGGACGCAGGTCCAGTTGCTCAAGGTCCTCAGGGTATTCAGGGGATTCAAGGTGTCCAAGGTAACACTGGCGCAACTGGCCAAAGCGCATACCAAGCAGCCGTCGCTGGCGGATTTGTGGGTACGCAAGCCGCCTGGCTCCAAAGCCTCGTCGGTCCTGCCGGCGATTCTGCAGTCCAGGCCGCAATCAAATCAGGACTCCTCCCCTCAGGAGCCACCATCACCGACTACGTCACCCTGACGACTGGTCCGCGAGGTCCCGCAGGTGCTGATGGTGCAACTGGTCCGCAAGGCCAGACTGGTCCGGCGATCTCGATCATCGGTACGCTGTCCGATTCCTCGCAACTCCCGGGAACGGGTACGGCAGGTACGGGTTATGCGATTCCTGATTCGGGTACGCCTGGCACTTACAACTGCTGGATCTGGTTGACGACCACGTCGCAGTGGTTCAACCTCGGTCACGTGGTTGGTGCTCAAGGCCCGCAGGGTATTCAAGGTCTGCGTGGTCTGCAAGGTCTCACGGGTGCTCAAGGTCCGCAAGGTCCGCAGGGTACGATCTGGATCGTGTTCGCACGCAATCCGCAAGCCCTCGATGGTCGCGTTGGCGATTACTTCTTCAACAGCAACACGCAGGAATTCTTCACCAAGACCGACACGGCAACGTGGGCCTCGCTGGGCCATATCGGTGGTGGGAACCTGAATGCTCCGTCGCAAACGGGCAAGTATCAGGGCTACAACGATTCCGGCTGGGTCAACCTGCCTGACGTTGTGAACGTTCTCCCGCCCAACGACGGCAAGAAGTATTTGCTGGTCAACGGCGAGTGGACGCTGGGCTCGAATGTCATCAACGCGATTCCGACCGACAACACCGGCAAAGTGTACGCTCTGTCGAATGGCGCGTGGGTGGAACAAGCCCTGCTCGATACGATCCCGGTTGACTCGGGCACGTACATCCTCAAGAGCGGTGTCTGGACTCGTCTGGATACCTATACCTTGAAGGCTGTCGACGTGGCGATCACGGGCGGTGTGGCTACGTGTGACCTTTCGGTTGCGCGTACGTTCCGCATCCAGAACACGGCAGCCGCAGCGGTCACCATGACCAACCTGCCGGCATCCGACCGTACGACCACTGTGATCGTCAAAATCTACGGGAAGACGAACGCCTTCACGTGGACCAATACGATCCGCTGGTTCGATGGCTCGGCGCCTCCGCTGACCAACAGCACGACCACCGTTGTCCTGAACTGGGACGGTACGGAATGGGTCGGCTCGGTTCCGAACTAA

Genome Context

Tertiary structure

PDB ID

13648abb3e55816bf4f810d603f22c2d680e84aa5a3340d65115f4ba38744bc0

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6745

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence