Protein

View in Explore
Genbank accession
YP_010669710.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,75
Protein sequence
MALQGISTGTTPNDGTGDSLLVGAVKVNDNFQEIYNALGNGTNLLTGNPGLTVGFITATGASFTGDVSIGGTLTYEDVTNIDSVGLITARDGISVLGAGITVTGVSTFYSSTTIGAASTFTDSGLSVGSAVTVTATGVNVTGIVTATTFEKIGGTSSQFLKADGSVDSSTYLTTALGNLVEDTTPQLGGDLDLNNRDITGTGDISIDTGNISLTNGYLQSNLGISTNSGSTTAQINVDSTGNQLIITVPGVGSTTLPLT
Physico‐chemical
properties
protein length:259 AA
molecular weight: 25754,93740 Da
isoelectric point:4,05003
aromaticity:0,04633
hydropathy:0,18764

Domains

Domains [InterPro]
IPR008987
4–43
IPR008987
IPR036240
4–60
IPR036240
G3DSA:1.20.5.960
13–42
G3DSA:1.20.5.960
YP_010669710.1
1 259
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SCSM1
[NCBI] 		2588487 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010669710.1 [NCBI]
Genbank nucleotide accession
NC_070962.1 [NCBI]
CDS location
range 21084 -> 21863
strand +
CDS
ATGGCACTACAAGGTATATCAACTGGAACTACACCAAATGACGGTACTGGAGATTCTCTCCTTGTAGGTGCCGTTAAGGTTAATGATAATTTTCAAGAAATTTATAATGCTCTTGGAAATGGTACAAATTTATTAACTGGAAATCCTGGTCTTACTGTTGGATTTATCACTGCCACTGGAGCATCTTTTACTGGAGATGTATCTATTGGTGGAACTCTTACATATGAAGATGTAACTAATATTGATTCTGTTGGATTGATTACTGCAAGAGATGGTATTTCAGTTCTTGGTGCGGGAATTACAGTAACTGGTGTTTCTACATTTTATAGTTCTACTACAATTGGTGCGGCAAGTACTTTCACCGATAGTGGTCTTTCTGTGGGTTCTGCGGTCACTGTAACTGCAACTGGAGTCAATGTAACGGGTATTGTTACTGCAACTACATTTGAAAAAATTGGTGGTACTTCATCACAGTTTCTAAAAGCAGATGGTTCTGTAGATAGTAGTACATATTTAACTACCGCATTGGGAAATCTTGTTGAAGATACGACACCGCAACTCGGTGGTGATTTAGATCTAAACAATAGGGATATCACTGGAACTGGTGATATTTCTATTGATACTGGAAATATATCTTTAACTAATGGTTATTTGCAGTCTAATTTGGGGATTAGCACTAATTCTGGATCAACCACTGCCCAAATTAATGTTGACTCGACTGGAAATCAGTTGATAATTACTGTGCCAGGTGTTGGTTCAACAACCCTACCATTAACCTAA

Tertiary structure

PDB ID
fdb78549849980f65f8d43784a22b82d874e5726cf1615b305cac132ccf1fd03
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6987
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and proteomic characterization of cyanophage S-SCSM1 provides new insights into understanding the viral gene diversity and phage-host interactions Wang,Q., Xu,Y., Jiao,N. and Zhang,R. 2022-10-26 — GenBank