Phage RBP Database

Genbank accession

QKN87243.1 [GenBank]

Protein name

long tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,99

Seq2Symm

C3 confidence 0,986

C3	0,986
D3	0,001
C1	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MREADFDLIFAKKAPLTRELSDEQYEKGWYYLGDTAPDKRDFDSVMRYMDEKIKKLSTMVSAAVEAVGNATPVGAPLAWPSDTAPDGWALMIGQTFDKVKYPLLAKVYPSGVLPDMRGRVIKAKPDGRAVLSLEEDQVKSHTHTGKAATAGGTRATSTFDHGNKRTTTNGNHTHGSPQGARHGGSGQYTSGDDETNSVFNWPATSAAGDHFHDVQIGPHNHNVDINHEHTLQIDATGGTENTVKNIAMNYIVRLA

Physico‐chemical properties

protein length:	255 AA
molecular weight:	27747,47210 Da
isoelectric point:	6,16245
aromaticity:	0,07451
hydropathy:	-0,62706

Domain architecture

QKN87243.1

1 255 aa

ATT 70–123 · STR 124–254 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR051934
Unmapped

IPR051934

SSF88874
STR

SSF88874

IPR037053
ATT

IPR037053

IPR011083
ATT

IPR011083

QKN87243.1

1255 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0310
STR

DC_0310

QKN87243.1

1255 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR051934	Unmapped	-	63	255	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
SSF88874	STR	SSF88874	67	254	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	70	123	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	74	121	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits

Proteins with similar domain architecture

Phage

Yersinia phage vB_YenM_574 [NCBI] · taxon 2736219

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Yersinia enterocolitica [NCBI] · taxon 630

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

QKN87243.1 [NCBI]

Genbank nucleotide accession

MT366941.1 [NCBI]

CDS location

range 41454 -> 42221
strand +

CDS

ATGAGAGAAGCAGATTTTGATTTAATTTTCGCAAAGAAAGCGCCGCTAACTCGCGAATTGAGTGACGAGCAATACGAAAAAGGCTGGTACTACTTAGGCGACACAGCGCCGGATAAGCGGGATTTTGATAGCGTTATGCGCTACATGGACGAGAAGATCAAGAAACTGTCAACAATGGTAAGCGCGGCGGTTGAGGCGGTAGGTAATGCAACTCCTGTAGGTGCTCCGCTTGCTTGGCCTAGCGACACAGCGCCTGACGGCTGGGCGCTAATGATTGGTCAGACTTTCGACAAGGTGAAATATCCGCTACTGGCTAAGGTGTATCCGTCCGGAGTATTGCCAGACATGCGCGGCAGGGTAATCAAGGCAAAACCGGACGGGCGAGCGGTTTTGTCACTTGAAGAAGATCAGGTTAAGAGTCACACCCATACCGGTAAGGCTGCAACGGCTGGCGGCACACGCGCAACGTCAACGTTTGATCATGGCAACAAGCGAACAACCACTAACGGGAATCATACGCACGGTTCGCCACAAGGTGCGCGACATGGTGGTAGCGGTCAATATACGTCTGGTGATGATGAAACAAACAGCGTGTTTAATTGGCCTGCAACCTCGGCAGCTGGCGACCACTTCCATGATGTGCAAATCGGCCCACACAACCATAATGTAGACATTAATCATGAACATACGTTGCAGATTGACGCTACTGGCGGCACTGAAAACACGGTTAAAAACATTGCGATGAACTACATTGTTCGTCTGGCATAA

Title	Authors	Date	PMID	Source
Sequences of Yersinia phage genomes	Hammerl,J.A. and Hertwig,S.	2018-05-10	—	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature