Phage RBP Database

Genbank accession

URG14291.1 [GenBank]

Protein name

tail spike protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 1,00

Seq2Symm

C3 confidence 0,992

C3	0,992
C1	0,109
D3	0,043

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MPVSPTKYTKISDLPKKEVMENDQFIINTNDTKLDQTSVASLYDIREGVYFSNAANTIAEGLASVDDDEMFFVYDTAAKFSVLQYMKVRNQASPVIGSDGKQRRFPTYLSMLNVTAISETSGYDIIGKVDNFAALRSIKPTYTGQRVILAGYFSGSSLGSGEFVGYAGTANDDGGTTASGDGFYWKRNKTAFTLEDFGGGQVDDTEAMRASQKAQVGPITLSPGKTYYYSSPVKHYSKAGWIGNGASIVFRGTGNRIPFISSPTTAAGVDNDRANGSTAVVGAIFKDLTIDVNYVDTTGALGFEFGENTLDNWTNCVFTNVTFKNGKFDNLGLQNNSTDNQFIRCTFINAGEDSVTVRGGCLRNEFVECDVVNSAQVAHRDGTFYGDGIVNKGRDTLIKSCRFINIGNGKKGAGIANNAEDTKNADEASNGTYLNNYFINCYGGFGFGTVNPDFIAAGDLIKGIKAIGNVFVNTLRTVIGIRDLYQPVLLDNVILTQTTGNVTTIEITNCTNFQMTGRVTDAAGSAITITSSSGKVDLVADNVSTTKTLNGVVITDSNRITGSIRLINAQRRGCTFSNCNNMDLDLYVESPAQDALEAVGCRYSNLDVKLVNVPEHGMTLNGVVESNIKFNINDAGVKTPSAFYPIRLLGVRNSILSGVSSSANANKPLYDITSDANNVNVLIANSRLGAGTTGKVQVGQGSTITQNNII

Physico‐chemical properties

protein length:	710 AA
molecular weight:	76041,98530 Da
isoelectric point:	5,26974
aromaticity:	0,08732
hydropathy:	-0,18310

Domain architecture

URG14291.1

1 710 aa

STR 197–532 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR012334
STR

IPR012334

IPR011050
STR

IPR011050

IPR012334
STR

IPR012334

IPR006626
Unmapped

IPR006626 IPR006626 IPR006626 IPR006626

URG14291.1

1710 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1164
ATT

DC_1164 DC_1084

DC_0717
ATT

DC_0717

URG14291.1

1710 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR012334	STR	IPR012334	197	512	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	198	532	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012334	STR	IPR012334	210	512	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR006626	Unmapped	-	313	335	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	337	359	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	393	419	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	428	449	InterPro	Parallel beta-helix repeat	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

URG14291.1

1 710 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	205	205	0,9948
Central domain	206	699	495	0,9968
C-terminal	700	710	10	0,3298

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pectobacterium phage vB_ParM-25 [NCBI] · taxon 2939654

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host No host information

Genbank protein accession

URG14291.1 [NCBI]

Genbank nucleotide accession

ON375847.1 [NCBI]

CDS location

range 20249 -> 22381
strand +

CDS

ATGCCAGTATCACCGACGAAATATACTAAGATCTCCGACTTACCTAAAAAGGAAGTTATGGAGAACGATCAGTTTATCATTAATACCAACGACACTAAGCTGGATCAAACGAGCGTAGCTTCTCTCTACGATATTCGTGAGGGCGTCTACTTCAGTAACGCAGCTAACACCATCGCCGAAGGTCTGGCCTCCGTGGACGATGACGAGATGTTCTTTGTCTACGACACTGCAGCTAAGTTCTCTGTCCTTCAGTACATGAAGGTTCGTAACCAGGCATCACCTGTCATTGGTTCCGATGGCAAACAACGCCGTTTCCCTACTTACCTTTCCATGTTGAATGTAACTGCTATCTCGGAAACGTCCGGTTACGACATCATCGGTAAGGTTGACAATTTCGCCGCTCTACGTTCTATCAAACCTACCTACACGGGTCAGCGCGTTATCCTGGCTGGGTATTTCTCTGGTAGCTCTTTGGGATCCGGGGAATTTGTGGGGTACGCAGGGACAGCTAACGATGATGGCGGTACTACTGCCTCAGGCGATGGCTTTTATTGGAAGCGGAACAAGACTGCCTTTACGCTCGAAGATTTCGGCGGTGGCCAGGTAGACGATACTGAAGCAATGCGTGCATCTCAGAAAGCACAAGTAGGCCCTATTACCTTATCTCCAGGTAAAACCTATTATTACTCATCTCCGGTAAAACATTATTCTAAAGCCGGTTGGATTGGTAATGGTGCTTCTATCGTATTCAGAGGGACAGGTAACCGAATTCCGTTTATCTCTTCTCCGACTACAGCTGCTGGAGTTGATAACGATCGCGCAAACGGAAGCACTGCTGTAGTCGGAGCTATTTTTAAAGATCTGACTATTGACGTCAACTATGTCGATACTACGGGCGCATTAGGCTTTGAGTTTGGCGAGAACACGTTGGACAACTGGACGAATTGCGTCTTTACTAACGTGACATTCAAGAACGGTAAGTTCGATAACTTGGGGCTGCAGAATAACTCCACCGATAACCAGTTTATCCGCTGTACTTTCATTAACGCAGGTGAAGACTCGGTTACTGTACGCGGCGGTTGTCTCCGTAATGAGTTTGTTGAATGTGATGTTGTCAATAGCGCACAGGTAGCTCACCGAGACGGAACCTTCTACGGAGACGGTATCGTCAACAAAGGTCGTGATACCTTGATCAAAAGCTGTCGCTTCATCAATATCGGTAATGGTAAGAAAGGCGCAGGTATTGCAAATAACGCTGAAGATACCAAGAACGCCGACGAAGCTAGTAACGGTACTTACCTCAACAACTATTTCATTAACTGTTATGGCGGTTTTGGTTTCGGTACGGTTAACCCAGACTTCATCGCAGCAGGTGATTTGATTAAAGGTATCAAGGCTATCGGAAACGTATTTGTAAATACGCTTCGCACCGTGATAGGTATTCGTGATCTTTACCAACCGGTTCTGTTGGATAACGTTATCCTTACCCAGACCACCGGTAACGTAACCACGATTGAGATTACCAACTGCACCAACTTCCAAATGACCGGTCGTGTTACAGATGCCGCTGGCTCCGCTATTACGATTACGTCTTCCTCGGGTAAAGTTGATTTGGTGGCGGATAATGTCTCCACGACCAAGACACTCAACGGGGTGGTTATTACCGACAGTAATCGGATTACGGGCAGTATCCGTTTGATCAATGCTCAACGCCGCGGCTGTACTTTCTCTAACTGTAACAACATGGACTTAGACCTCTACGTTGAGTCGCCTGCACAGGACGCGCTGGAAGCAGTTGGCTGTCGTTACTCTAACTTAGATGTTAAGTTGGTGAACGTCCCTGAACACGGTATGACATTGAACGGCGTTGTTGAAAGTAATATCAAGTTCAACATCAATGATGCGGGAGTTAAAACTCCATCTGCATTTTATCCGATCCGGTTACTGGGTGTACGTAACAGTATCCTCAGCGGAGTATCGTCTTCGGCTAATGCGAATAAACCACTTTACGATATTACATCCGATGCTAATAACGTAAACGTATTAATCGCCAATAGTCGTCTTGGAGCGGGTACTACGGGTAAAGTACAGGTTGGTCAAGGGTCTACTATTACCCAGAACAATATCATCTAG

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)