Phage RBP Database

Genbank accession

YP_009792299.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,89

TF

Evidence RBPdetect2

Probability 0,98

Protein sequence

MGSGRIRGLSGAAEWHRGRRRNIQRDVIGSFMSQTVITLAFEQWKAQQGVTGEAILLDEFVFANVPGLNPDAPISRSETLPPAAQIVHRQAVSRKGVVNENAVVHSVVLGADVGDFSFNWIGLMNKASGTLAMIVHAPVQQKLKTKAGQQGNVLTRSFLMEYNGAQAETGINTPAETWQIDFTARLAGMDERQRLENIDVFGAAAFLGDGWLVGKTGTQYFVTPGTGYVQGLRAQLAASQNITVTTKPVKVWLDVSWEGSLVSSWQVKSKVTVAANLADYVQNGVQHYVFALASIDASGKITDLRPKGSLSDQALKEHEKSRNHPDATTSDKGFVQLSSATDSDSESQAATPLAVKKTYELAKGKYTAQDASTMQKGIVQLSSATNSESESEAATSKAIKAVNDNAIALSKKALPLAGGTMSGAITGDADAGAGSYASQNNDGVLAPFFQLINDASESKFFPVIKQRYAQGKGTWSLGTIVKAGSFQLQYISADDPAGKIFTFNKDGQFSPASYANFDARYFPLGGGAVSGFVRARGEIQSLSANSMRIVYGNYGTFWRNDGDNLYLMLTNSGDQYGSYNSLRSFTVSLSTGRVLIGHGLSVSGGITGSGQFVPSDYGNFDARYSLKTAAVIDVRQGSPGTIVLKRNGWNYVPGGCAFTGWYVEGNAPVDDTIQYKPIQININGAWRTISG

Physico‐chemical properties

protein length:	691 AA
molecular weight:	73881,85590 Da
isoelectric point:	8,83696
aromaticity:	0,09262
hydropathy:	-0,21954

Domain architecture

YP_009792299.1

1 691 aa

ATT 34–189 · STR 328–369 · STR 372–406 · ATT 518–587 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR022225
ATT

IPR022225 IPR051934 IPR005068 IPR048390

IPR005068
STR

IPR005068

YP_009792299.1

1691 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0787
STR

DC_0787

DC_0932
STR

DC_0932

YP_009792299.1

1691 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR022225	ATT	DC_0271	34	189	InterPro cluster	Phage tail fibre protein, N-terminal domain	Central	Medium	Text match	271 proteins / 271 hits
IPR051934	Unmapped	-	302	359	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
IPR005068	STR	DC_0738	328	369	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
IPR005068	STR	DC_0738	372	406	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
IPR048390	ATT	DC_0836	518	587	InterPro cluster	Long-tail fiber proximal subunit, trimerization domain	C-terminal	Medium	Text match	656 proteins / 656 hits

Proteins with similar domain architecture

Phage

Cronobacter phage ESSI-2 [NCBI] · taxon 947842

Uroviricota Caudoviricetes Peduoviridae Seongnamvirus ESSI2

Host

Cronobacter sakazakii [NCBI] · taxon 28141

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YP_009792299.1 [NCBI]

Genbank nucleotide accession

NC_047854.1 [NCBI]

CDS location

range 3655 -> 5730
strand -

CDS

ATGGGATCAGGGCGAATACGTGGTTTATCCGGCGCAGCTGAATGGCACCGGGGCCGCAGGCGCAACATTCAGCGCGACGTTATAGGGAGTTTTATGTCACAGACAGTAATCACACTGGCCTTTGAACAGTGGAAAGCGCAGCAGGGCGTGACGGGTGAAGCCATCCTGCTGGATGAATTTGTGTTTGCAAACGTGCCGGGGCTTAACCCTGATGCGCCGATCAGCCGCAGTGAAACGCTGCCACCGGCGGCGCAGATTGTTCACCGCCAGGCGGTCAGCCGCAAGGGTGTGGTGAATGAAAATGCCGTGGTGCATTCCGTGGTACTGGGCGCGGATGTGGGCGATTTCTCGTTTAACTGGATTGGCCTGATGAACAAGGCCAGCGGCACGCTGGCAATGATTGTTCATGCGCCGGTGCAGCAGAAGCTGAAAACGAAAGCGGGCCAGCAGGGCAACGTGCTCACCCGCTCTTTTCTGATGGAGTACAACGGCGCGCAGGCCGAAACGGGCATTAACACCCCGGCGGAAACCTGGCAGATTGATTTTACCGCGCGCCTGGCCGGGATGGACGAACGCCAGCGCCTGGAAAACATCGACGTATTCGGCGCGGCGGCGTTTCTGGGGGATGGATGGCTGGTCGGCAAAACCGGCACGCAGTATTTCGTGACGCCTGGCACCGGTTATGTGCAGGGGCTGCGCGCGCAGCTGGCTGCAAGTCAGAATATTACGGTGACCACAAAGCCGGTCAAAGTCTGGCTGGATGTGAGCTGGGAAGGTTCGCTGGTCAGTAGCTGGCAGGTAAAAAGCAAAGTGACCGTGGCGGCAAATCTTGCCGATTACGTGCAGAACGGCGTGCAGCATTACGTGTTTGCGCTGGCCAGTATTGATGCCAGCGGGAAAATAACGGATTTACGCCCCAAAGGTAGTCTGAGTGATCAGGCATTAAAAGAGCATGAAAAATCACGTAATCACCCGGATGCAACAACCAGCGATAAAGGATTCGTACAGCTAAGTAGCGCAACGGATAGTGATTCTGAAAGTCAGGCCGCAACGCCGCTTGCCGTTAAAAAAACGTATGAGCTGGCTAAGGGGAAGTATACCGCCCAGGATGCGTCAACGATGCAAAAAGGCATTGTTCAGCTGAGTAGCGCCACCAACAGCGAGTCAGAAAGCGAGGCAGCGACGTCAAAGGCCATAAAAGCGGTGAATGATAATGCGATAGCGCTTTCAAAAAAGGCATTGCCGCTGGCTGGCGGCACAATGTCCGGAGCTATCACCGGTGACGCTGACGCTGGCGCGGGGTCATATGCTTCACAGAATAATGACGGGGTTTTAGCGCCATTTTTCCAGCTAATCAATGACGCATCCGAATCAAAATTCTTTCCGGTCATTAAGCAGAGATATGCACAAGGGAAAGGAACGTGGTCATTAGGAACGATAGTTAAAGCGGGTAGTTTCCAGCTTCAATATATTTCTGCCGATGACCCGGCAGGAAAAATATTCACATTTAACAAAGACGGGCAATTTTCCCCCGCTTCTTACGCAAATTTTGATGCCCGATATTTTCCGCTGGGTGGTGGAGCAGTATCTGGGTTTGTAAGAGCAAGAGGTGAGATTCAGTCACTTTCAGCAAACAGTATGCGCATTGTTTACGGCAATTACGGCACGTTCTGGCGAAACGATGGCGACAATCTTTATTTGATGCTGACCAACTCAGGCGACCAGTACGGTAGCTATAACTCGCTGCGCTCTTTCACGGTTAGCCTTTCAACCGGCAGGGTTTTGATAGGTCATGGGCTGTCTGTAAGTGGCGGCATCACGGGATCCGGGCAATTTGTTCCGTCTGATTACGGCAACTTTGATGCGCGTTATTCATTAAAAACTGCTGCGGTGATCGATGTACGGCAGGGGAGTCCCGGCACTATTGTCCTGAAGCGAAATGGCTGGAACTACGTTCCGGGCGGGTGTGCGTTTACCGGCTGGTATGTCGAGGGTAATGCACCTGTAGATGACACCATTCAATACAAGCCGATTCAAATCAATATCAACGGCGCATGGCGAACTATTTCGGGGTAA

Title	Authors	Date	PMID	Source
Complete genomic sequence of virulent Cronobacter sakazakii phage ESSI-2 isolated from swine feces	Lee,Y.D., Chang,H.I. and Park,J.H.	2011	21311921	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature