Phage RBP Database

Genbank accession

YP_009792299.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,89

TF

Evidence RBPdetect2

Probability 0,98

Seq2Symm

C3 confidence 0,997

C3	0,997
C6	0,033
C1	0,002

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MGSGRIRGLSGAAEWHRGRRRNIQRDVIGSFMSQTVITLAFEQWKAQQGVTGEAILLDEFVFANVPGLNPDAPISRSETLPPAAQIVHRQAVSRKGVVNENAVVHSVVLGADVGDFSFNWIGLMNKASGTLAMIVHAPVQQKLKTKAGQQGNVLTRSFLMEYNGAQAETGINTPAETWQIDFTARLAGMDERQRLENIDVFGAAAFLGDGWLVGKTGTQYFVTPGTGYVQGLRAQLAASQNITVTTKPVKVWLDVSWEGSLVSSWQVKSKVTVAANLADYVQNGVQHYVFALASIDASGKITDLRPKGSLSDQALKEHEKSRNHPDATTSDKGFVQLSSATDSDSESQAATPLAVKKTYELAKGKYTAQDASTMQKGIVQLSSATNSESESEAATSKAIKAVNDNAIALSKKALPLAGGTMSGAITGDADAGAGSYASQNNDGVLAPFFQLINDASESKFFPVIKQRYAQGKGTWSLGTIVKAGSFQLQYISADDPAGKIFTFNKDGQFSPASYANFDARYFPLGGGAVSGFVRARGEIQSLSANSMRIVYGNYGTFWRNDGDNLYLMLTNSGDQYGSYNSLRSFTVSLSTGRVLIGHGLSVSGGITGSGQFVPSDYGNFDARYSLKTAAVIDVRQGSPGTIVLKRNGWNYVPGGCAFTGWYVEGNAPVDDTIQYKPIQININGAWRTISG

Physico‐chemical properties

protein length:	691 AA
molecular weight:	73881,85590 Da
isoelectric point:	8,83696
aromaticity:	0,09262
hydropathy:	-0,21954

Domain architecture

YP_009792299.1

1 691 aa

ATT 34–189 · STR 328–369 · STR 372–406 · ATT 518–587 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR022225
ATT

IPR022225 IPR051934 IPR005068 IPR048390

IPR005068
STR

IPR005068

YP_009792299.1

1691 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0787
STR

DC_0787

DC_0932
STR

DC_0932

YP_009792299.1

1691 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR022225	ATT	DC_0271	34	189	InterPro cluster	Phage tail fibre protein, N-terminal domain	Central	Medium	Text match	271 proteins / 271 hits
IPR051934	Unmapped	-	302	359	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
IPR005068	STR	DC_0738	328	369	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
IPR005068	STR	DC_0738	372	406	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
IPR048390	ATT	DC_0836	518	587	InterPro cluster	Long-tail fiber proximal subunit, trimerization domain	C-terminal	Medium	Text match	656 proteins / 656 hits

Proteins with similar domain architecture

Phage

Cronobacter phage ESSI-2 [NCBI] · taxon 947842

Uroviricota Caudoviricetes Peduoviridae Seongnamvirus ESSI2

Host

Cronobacter sakazakii [NCBI] · taxon 28141

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YP_009792299.1 [NCBI]

Genbank nucleotide accession

NC_047854.1 [NCBI]

CDS location

range 3655 -> 5730
strand -

CDS

ATGGGATCAGGGCGAATACGTGGTTTATCCGGCGCAGCTGAATGGCACCGGGGCCGCAGGCGCAACATTCAGCGCGACGTTATAGGGAGTTTTATGTCACAGACAGTAATCACACTGGCCTTTGAACAGTGGAAAGCGCAGCAGGGCGTGACGGGTGAAGCCATCCTGCTGGATGAATTTGTGTTTGCAAACGTGCCGGGGCTTAACCCTGATGCGCCGATCAGCCGCAGTGAAACGCTGCCACCGGCGGCGCAGATTGTTCACCGCCAGGCGGTCAGCCGCAAGGGTGTGGTGAATGAAAATGCCGTGGTGCATTCCGTGGTACTGGGCGCGGATGTGGGCGATTTCTCGTTTAACTGGATTGGCCTGATGAACAAGGCCAGCGGCACGCTGGCAATGATTGTTCATGCGCCGGTGCAGCAGAAGCTGAAAACGAAAGCGGGCCAGCAGGGCAACGTGCTCACCCGCTCTTTTCTGATGGAGTACAACGGCGCGCAGGCCGAAACGGGCATTAACACCCCGGCGGAAACCTGGCAGATTGATTTTACCGCGCGCCTGGCCGGGATGGACGAACGCCAGCGCCTGGAAAACATCGACGTATTCGGCGCGGCGGCGTTTCTGGGGGATGGATGGCTGGTCGGCAAAACCGGCACGCAGTATTTCGTGACGCCTGGCACCGGTTATGTGCAGGGGCTGCGCGCGCAGCTGGCTGCAAGTCAGAATATTACGGTGACCACAAAGCCGGTCAAAGTCTGGCTGGATGTGAGCTGGGAAGGTTCGCTGGTCAGTAGCTGGCAGGTAAAAAGCAAAGTGACCGTGGCGGCAAATCTTGCCGATTACGTGCAGAACGGCGTGCAGCATTACGTGTTTGCGCTGGCCAGTATTGATGCCAGCGGGAAAATAACGGATTTACGCCCCAAAGGTAGTCTGAGTGATCAGGCATTAAAAGAGCATGAAAAATCACGTAATCACCCGGATGCAACAACCAGCGATAAAGGATTCGTACAGCTAAGTAGCGCAACGGATAGTGATTCTGAAAGTCAGGCCGCAACGCCGCTTGCCGTTAAAAAAACGTATGAGCTGGCTAAGGGGAAGTATACCGCCCAGGATGCGTCAACGATGCAAAAAGGCATTGTTCAGCTGAGTAGCGCCACCAACAGCGAGTCAGAAAGCGAGGCAGCGACGTCAAAGGCCATAAAAGCGGTGAATGATAATGCGATAGCGCTTTCAAAAAAGGCATTGCCGCTGGCTGGCGGCACAATGTCCGGAGCTATCACCGGTGACGCTGACGCTGGCGCGGGGTCATATGCTTCACAGAATAATGACGGGGTTTTAGCGCCATTTTTCCAGCTAATCAATGACGCATCCGAATCAAAATTCTTTCCGGTCATTAAGCAGAGATATGCACAAGGGAAAGGAACGTGGTCATTAGGAACGATAGTTAAAGCGGGTAGTTTCCAGCTTCAATATATTTCTGCCGATGACCCGGCAGGAAAAATATTCACATTTAACAAAGACGGGCAATTTTCCCCCGCTTCTTACGCAAATTTTGATGCCCGATATTTTCCGCTGGGTGGTGGAGCAGTATCTGGGTTTGTAAGAGCAAGAGGTGAGATTCAGTCACTTTCAGCAAACAGTATGCGCATTGTTTACGGCAATTACGGCACGTTCTGGCGAAACGATGGCGACAATCTTTATTTGATGCTGACCAACTCAGGCGACCAGTACGGTAGCTATAACTCGCTGCGCTCTTTCACGGTTAGCCTTTCAACCGGCAGGGTTTTGATAGGTCATGGGCTGTCTGTAAGTGGCGGCATCACGGGATCCGGGCAATTTGTTCCGTCTGATTACGGCAACTTTGATGCGCGTTATTCATTAAAAACTGCTGCGGTGATCGATGTACGGCAGGGGAGTCCCGGCACTATTGTCCTGAAGCGAAATGGCTGGAACTACGTTCCGGGCGGGTGTGCGTTTACCGGCTGGTATGTCGAGGGTAATGCACCTGTAGATGACACCATTCAATACAAGCCGATTCAAATCAATATCAACGGCGCATGGCGAACTATTTCGGGGTAA

Title	Authors	Date	PMID	Source
Complete genomic sequence of virulent Cronobacter sakazakii phage ESSI-2 isolated from swine feces	Lee,Y.D., Chang,H.I. and Park,J.H.	2011	21311921	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature