Protein

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Genbank accession
AFC22306.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence Phold
Probability 1,00
Protein sequence
MNNTINHVSDKSVYVTFDPAGTQWPSTYTNVQQALASIGSWARTDVGLPNAAPGVRGIAAIATQEMIDAGTDTQTIVTPALLEYRLQNPHASQTVWGYTRYATDAESITVTNDLVSLTPRSLNYVFNTRQSKENVWGSAKLSTTAQATSGTDDTTAMTPLKVKQAIAAMVPVQSNATESNFGLVQLATVAEVRAGTIRDGFAISPYTFIRLTATETDLGLLRIATQEEVNAGTDNTKAITPQKLAAVKGSGSAFGLVKLSTDVNTGLANTALSAGANVVPSNRNSAITGGALYQGSIVADNKYQTQSDVEVNIPIGCMMLSAFNSDYGNIFICNGRAMNRNTYPVLFSRIGYTYGGAGDIFNLPDMRGVAARGFDAGRGLDPGRGFGTYQDDMFKSHEHQLQMIYRNGGNLPSSEAIYELKNSEKNDQLIMQLNPAYTKAMATGGNETRMKNVAVNYVIRVR
Physico‐chemical
properties
protein length:462 AA
molecular weight: 49542,97310 Da
isoelectric point:6,45682
aromaticity:0,07576
hydropathy:-0,22835

Domains

Domains [InterPro]
IPR037053
302–367
IPR037053
SSF88874
305–461
SSF88874
IPR011083
318–369
IPR011083
AFC22306.1
1 462
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage vB_CsaM_GAP161
[NCBI] 		1141138 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cronobacter sakazakii
[NCBI] 		28141 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Cronobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFC22306.1 [NCBI]
Genbank nucleotide accession
JN882287 [NCBI]
CDS location
range 117917 -> 119305
strand +
CDS
ATGAACAACACAATTAACCACGTAAGCGATAAATCCGTTTACGTGACATTTGATCCTGCTGGTACGCAATGGCCTAGCACGTACACGAATGTTCAGCAAGCGCTTGCATCTATCGGATCATGGGCGCGTACTGATGTTGGCTTGCCTAATGCCGCGCCTGGTGTGCGTGGTATTGCTGCTATTGCTACACAGGAAATGATTGATGCAGGTACAGACACACAGACGATCGTAACTCCGGCTCTGCTGGAATACCGTCTGCAAAACCCTCATGCATCACAAACCGTATGGGGTTACACCCGTTACGCAACTGATGCAGAATCAATAACCGTAACGAACGATCTGGTTTCATTAACACCGCGTTCATTGAACTATGTGTTTAACACCCGTCAGTCGAAAGAAAACGTCTGGGGTTCTGCAAAACTGTCAACCACTGCACAGGCAACGTCTGGTACTGATGACACGACCGCAATGACTCCGCTTAAAGTGAAGCAAGCAATTGCTGCTATGGTTCCGGTACAGTCAAACGCAACTGAAAGCAATTTCGGTTTGGTACAGTTGGCAACAGTTGCCGAAGTCCGCGCAGGTACTATCCGCGACGGTTTCGCAATTTCACCATACACGTTTATTCGTCTGACTGCAACAGAAACCGATTTAGGCTTACTCCGTATCGCTACACAGGAGGAAGTAAACGCGGGTACTGATAACACAAAAGCAATCACCCCGCAAAAACTTGCTGCTGTGAAGGGTTCTGGCTCTGCATTTGGTTTGGTTAAATTATCAACAGATGTCAACACCGGATTAGCGAATACCGCGTTGTCTGCTGGTGCTAACGTAGTTCCAAGCAACAGAAACAGTGCTATCACTGGCGGTGCGCTGTATCAGGGTTCTATTGTTGCTGACAATAAATACCAGACACAAAGCGACGTTGAAGTAAATATTCCGATCGGTTGTATGATGCTATCTGCATTTAACTCCGACTATGGAAATATTTTTATCTGTAACGGACGCGCAATGAACCGCAACACATATCCTGTTCTGTTTTCCCGCATCGGGTATACATACGGCGGTGCTGGGGATATTTTCAACCTCCCAGATATGCGCGGTGTTGCTGCTCGCGGTTTCGATGCCGGACGTGGATTAGATCCTGGACGTGGTTTCGGTACTTACCAGGATGATATGTTTAAATCCCACGAACACCAGTTACAGATGATCTATCGTAACGGTGGTAATCTTCCGTCATCCGAAGCAATATACGAATTGAAAAATTCAGAAAAGAACGACCAGTTAATTATGCAACTGAATCCAGCATACACTAAAGCTATGGCAACTGGCGGAAACGAAACGCGAATGAAAAACGTTGCAGTCAACTATGTAATTCGAGTACGATAA

Tertiary structure

PDB ID
30fce0038763d501b0fe40b1d164e82f895c3cffe13126bd80ef9f6ccafa78dd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7377
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Cronobacter sakazakii Bacteriophage vB_CsaM_GAP161 Abbasifar,R., Kropinski,A.M., Sabour,P.M., Ackermann,H.W., Lingohr,E.J. and Griffiths,M.W. 2012 23166229 GenBank