Protein

View in Explore
Genbank accession
YAF80486.1 [GenBank]
Protein name
major tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,81
Protein sequence
MHLPNGSQIFIENTRGDAVNATSISNAQEPKFTVASGGTDFRKGDYVIITASSWGKLLDRVVRVKSSEETSVTVEGIDTTDQNVFPAGNVTASFAKINGWTEIPCVQDLGQDGGEQQYYNYQCLSDDQEQQLPTFKSAVSLTYTFAHEYDNPIYPLLRKADESGDVKALRMYVPKAKEMRLWAGVLSFNEIPQTAVNEMETVSLSVSLKGRFTFLPANQD
Physico‐chemical
properties
protein length:220 AA
molecular weight: 24335,85190 Da
isoelectric point:4,77217
aromaticity:0,09545
hydropathy:-0,38727

Domains

View on InterPro
Domain architecture
YAF80486.1
1 220 aa
TAS 52–215 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YAF80486.1
1 220 aa
Domain Start End Length (AA) Confidence
N-terminal 1 17 17 0,9571
Central domain 18 209 193 0,1514
C-terminal 210 220 10 0,5462
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Salmonella phage CBDS-05 [NCBI] · taxon 3459909
Viruses
Host
Salmonella enterica [NCBI] · taxon 28901
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Coding sequence (CDS)

Genbank protein accession
YAF80486.1 [NCBI]
Genbank nucleotide accession
PX104385 [NCBI]
CDS location
range 8718 -> 9380
strand +
CDS
ATGCACTTACCAAACGGATCACAAATTTTTATTGAGAATACTCGCGGCGATGCCGTAAATGCAACAAGCATTAGCAATGCTCAGGAACCTAAATTTACTGTGGCAAGCGGCGGAACAGATTTTAGAAAAGGCGATTACGTAATTATTACTGCGTCAAGCTGGGGAAAACTTCTTGATCGCGTTGTTCGCGTCAAGTCATCGGAAGAAACAAGCGTTACTGTTGAAGGTATCGACACTACTGATCAAAACGTTTTTCCGGCTGGTAATGTTACCGCCAGCTTTGCGAAAATTAACGGATGGACAGAGATTCCATGCGTTCAGGATTTAGGGCAAGATGGCGGTGAGCAGCAGTATTATAACTATCAGTGTCTGAGCGATGACCAGGAACAGCAGTTACCTACGTTTAAAAGCGCGGTATCACTGACCTACACATTTGCGCATGAATACGATAACCCGATTTATCCGCTCTTGCGTAAGGCTGACGAATCCGGCGACGTTAAAGCATTGCGCATGTATGTACCAAAAGCGAAAGAAATGCGCCTTTGGGCTGGCGTGCTTTCTTTCAACGAGATCCCACAAACGGCGGTAAACGAAATGGAAACCGTTTCTTTGTCGGTATCCCTGAAAGGTCGCTTTACTTTCCTTCCTGCTAACCAGGATTAA

Genome Context

Tertiary structure

YAF80486.1
ColabFold structure
Source ColabFold
pLDDT 82.4
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
A machine learning approach to predict strain-specific phage-host interactions Camejo,P.Y., Leon,L.E., Rojas,F., Ossa,A., Hurtado,R., Tichy,D., Pieringer,C., Pino,M., Mora-Uribe,P., Ulloa,S., Norambuena,R., Tobar-Calfucoy,E., Aguilera,M., Rojas-Martinez,V., Cifuentes,O., Sabag,A., Cifuentes,N., San Martin,D., Infante,C., Cifuentes,P. and Pieringer,H. — — GenBank