Protein

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Genbank accession
XMR02072.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFVRLFDYGNVAPVKDTVVKINSDENSISVLYSDGSLYMRGRKPISKNGSYWFIFFNRWVLCPYSVDDFWSSLYCTIIRTKQGELYYSGTNSVFGISSSVSTWTRCESYFGSISPSSIKDIKITSTTSTNNSMLILTSDSQLYGIGMNGASELGTATAPITSPLLIDTSVTAIASSEMSRNFHYIKDGIYYRCGENTFYQLGTGDNNPITTFTTLNLGSSQVIAVQATRWVTRLIVQSSTSALSLMAAGWNTQLTIGGSENTGIIRSSFTTNPYTDITANSFDKLSPVSYVNAIKSSTNIINTNGKGYNSNGAGLGRNAVSGNYGSILPIEFFDDSVDLSHVEWFGSIGNGSVSVVSIGEDLYWTGNPGYFTEQGETGYIFKFKKCVPFR
Physico‐chemical
properties
protein length:392 AA
molecular weight: 42860,45680 Da
isoelectric point:5,78549
aromaticity:0,12500
hydropathy:-0,09031

Domains

Domains [InterPro]
DC_0433
ATT
1–135
DC_0433 DC_0436
IPR009091
STR
9–283
IPR009091
IPR009091
STR
18–284
IPR009091
DC_0433
ATT
113–197
DC_0433
XMR02072.1
1 392
Architecture
ATT
STR
ATT 1-197 | STR 198-284 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMR02072.1
1 392
Domain Start End Length (AA) Confidence
N-terminal 1 270 270 0,1046
Central domain 271 381 112 0,6028
C-terminal 382 392 10 0,7454
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-270
Central
271-381
C-terminal
382-392

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Turkey5
[NCBI] 		3375711 No lineage information
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMR02072.1 [NCBI]
Genbank nucleotide accession
PQ471516 [NCBI]
CDS location
range 338801 -> 339979
strand -
CDS
ATGTTACCTTTTGTTAGATTGTTTGATTATGGGAATGTTGCCCCTGTCAAAGATACTGTTGTTAAAATTAATAGTGATGAAAATTCAATAAGCGTATTATATAGTGACGGGTCATTATATATGCGTGGACGGAAACCAATCAGCAAAAATGGGAGTTACTGGTTCATCTTTTTTAATAGATGGGTTTTATGTCCTTATAGTGTTGATGATTTCTGGAGTTCTTTATATTGTACTATAATTAGAACAAAACAAGGGGAATTGTACTATAGTGGGACTAACTCAGTTTTTGGTATATCATCTTCTGTTTCAACATGGACTCGTTGTGAATCATATTTTGGATCTATTTCTCCGAGTTCTATAAAAGATATAAAAATAACATCTACAACCAGTACTAACAATTCTATGCTAATACTCACAAGTGACAGTCAGTTATATGGTATAGGCATGAATGGTGCAAGTGAATTGGGTACAGCAACTGCACCAATTACATCTCCACTCTTAATTGACACTAGTGTAACTGCAATTGCATCTAGTGAAATGAGCAGAAACTTTCACTATATAAAAGATGGTATATATTATCGTTGTGGTGAGAATACTTTTTATCAATTAGGAACAGGTGATAATAATCCAATTACTACTTTTACTACATTGAATCTTGGAAGTTCTCAGGTAATTGCAGTACAAGCTACACGATGGGTAACACGTTTGATTGTTCAAAGTAGTACATCTGCTTTGTCTTTAATGGCGGCTGGTTGGAACACACAGTTGACTATAGGTGGGTCTGAAAATACTGGTATCATAAGATCATCATTTACTACAAATCCCTATACCGATATAACAGCAAATTCATTCGATAAACTTTCACCAGTATCCTATGTTAATGCAATAAAATCCAGTACTAACATTATTAATACGAATGGTAAGGGATATAATTCTAATGGTGCTGGTTTAGGCCGCAACGCAGTCTCTGGGAATTATGGTTCAATATTACCAATAGAATTCTTTGATGATAGTGTTGACTTATCACATGTTGAGTGGTTTGGTTCAATTGGTAATGGTTCAGTATCGGTAGTTAGTATAGGTGAGGATTTATACTGGACTGGAAACCCTGGGTACTTCACTGAACAAGGTGAGACTGGATATATATTTAAATTCAAAAAGTGCGTACCTTTTAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
390c3ebe61b58f99ff62c7306de112f07f6d47463677abd407d715045e75687c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7739
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Transient expression effect of genes from a Jumbo E. coli phage Petrzik,K. and Brazdova,S. 2023-07-26 — GenBank