Protein

View in Explore
Genbank accession
YP_011108742.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,98
Seq2Symm
C3 confidence 0,996
C3 0,996
C1 0,460
T 0,001
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MLNNLNQPKGSTIGVLKDGRTIQQAIDGLENPVHYIKDVSITPSELLAVAVEAARLGRTVEFGPGHYTNQGHPFEVDFPLNLDVPVGTFLDFPIIIRGKTVKMVRSVATNLTATQCPAGTTVIAGDFSAFPVGSVVGVKLGDNTNGSASYNNEAGWDFTTVAAASNTSITLSTGLRWAFDKPEVFTPEYAVRYSGQLSRSSYFIPGDYTSGLNVGDIIRVENIDGTDGVHGNKEYFEMLKVSSIDSSGITVETRLRYTHVNPWIVKTGLVKGSSVTGGGRLKRLEVRGVDTPKVNSVDVDRLIVGLCYNIDVGEITSRGVGEPSSVNFTFCFGRGFLYNVRASGSVSTTDNSALKLMSCPGLIINNCSPHNSASTGSQGDYGFYVDAYYSPYWCWNDGMSINGIVTETPRSAVTRALWLFGLRGCSVSNLSGAQVFLQGCAKSVFSNIVTPDNLLELRDLSGCIVSGMANNALVLGCWNSTFDLTLFGIGSGSNLNIALRAGAGVTHPETGAPTTLGKNNTFNVKSFSPSSLAVTLSIAKQERPIFGAGCVDVDSANKSVTLGSDVTVPTMLPLALTKGIDSGSGWVGGRTKGGIWFDGNYRDAVVRWNGQYVWVADNGSLKAAPTKPDSDSPSNGVVIGP
Physico‐chemical
properties
protein length:641 AA
molecular weight: 67956,74760 Da
isoelectric point:6,03627
aromaticity:0,08580
hydropathy:-0,01919

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_011108742.1
1 641 aa
Domain Start End Length (AA) Confidence
N-terminal 1 57 57 0,7956
Central domain 58 585 529 0,9735
C-terminal 586 641 55 0,9158
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Klebsiella phage Oda [NCBI] · taxon 3018522
Uroviricota Caudoviricetes Autographivirales Studiervirinae Przondovirus
Host
Klebsiella michiganensis [NCBI] · taxon 1134687
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Coding sequence (CDS)

Genbank protein accession
YP_011108742.1 [NCBI]
Genbank nucleotide accession
NC_092455 [NCBI]
CDS location
range 36187 -> 38112
strand +
CDS
ATGTTAAACAACCTGAACCAGCCGAAAGGCTCGACCATTGGTGTGCTCAAGGATGGGCGCACTATCCAACAGGCAATTGATGGCTTGGAGAACCCGGTGCATTACATCAAAGATGTGAGCATCACGCCATCGGAACTACTGGCAGTAGCGGTAGAGGCTGCACGACTTGGCCGGACTGTGGAGTTTGGGCCGGGGCACTACACGAACCAAGGTCATCCATTCGAGGTGGACTTCCCGCTTAATCTGGATGTTCCAGTAGGAACCTTTCTGGACTTCCCTATCATCATACGAGGTAAGACCGTTAAGATGGTAAGGAGCGTGGCTACGAACCTGACTGCCACACAGTGCCCTGCTGGTACAACAGTCATTGCCGGGGACTTCTCAGCGTTCCCTGTTGGTTCCGTAGTGGGTGTAAAACTCGGGGATAATACCAACGGCTCAGCAAGTTATAACAACGAGGCTGGCTGGGATTTCACTACAGTTGCGGCGGCGTCCAACACCTCAATCACCCTCAGCACAGGGCTACGGTGGGCTTTCGATAAACCGGAAGTGTTTACCCCGGAGTATGCGGTACGATACTCAGGACAGCTGAGTCGGTCATCTTACTTCATACCGGGAGATTACACTTCCGGGCTGAATGTCGGAGATATCATCCGTGTTGAGAACATTGACGGTACTGATGGGGTCCACGGCAACAAGGAATACTTCGAGATGCTTAAGGTATCAAGTATAGATTCCTCAGGTATAACAGTTGAGACGCGCCTTCGGTATACCCATGTGAACCCTTGGATTGTAAAGACAGGGCTGGTCAAAGGCTCTTCGGTAACAGGGGGAGGTCGATTGAAGCGTTTAGAAGTACGCGGTGTTGACACGCCCAAGGTTAACAGTGTAGATGTGGACCGCTTAATTGTCGGTCTGTGCTACAACATCGACGTTGGGGAGATAACCTCTCGTGGCGTCGGTGAGCCTTCCTCGGTGAACTTCACGTTCTGCTTCGGTCGGGGCTTCCTGTACAACGTAAGGGCCTCGGGGTCGGTGTCCACAACGGATAACTCAGCGTTAAAGTTGATGAGCTGTCCGGGCCTAATCATTAACAACTGTTCACCTCACAACTCTGCATCCACTGGTTCTCAAGGTGACTATGGGTTCTACGTTGACGCCTATTACTCTCCGTACTGGTGCTGGAACGACGGCATGTCTATCAATGGGATTGTCACTGAGACACCTAGGTCGGCTGTAACACGTGCGCTGTGGCTGTTTGGTCTGAGAGGCTGTTCTGTTAGTAACCTGTCCGGTGCCCAAGTGTTCCTACAGGGCTGCGCTAAGTCGGTGTTCTCTAACATCGTCACCCCGGACAATCTCCTTGAACTACGGGACCTGTCTGGCTGCATTGTATCCGGCATGGCAAATAACGCGCTGGTACTCGGCTGTTGGAACTCGACGTTCGACCTTACGCTATTTGGTATTGGCTCTGGGTCAAACCTTAACATAGCGTTACGGGCCGGGGCAGGCGTTACCCACCCGGAGACTGGTGCGCCCACTACCCTCGGTAAGAACAACACGTTCAACGTTAAGAGTTTTAGCCCATCGTCGCTTGCTGTCACCCTAAGTATCGCCAAACAAGAGCGCCCAATCTTTGGTGCTGGCTGTGTTGACGTTGATTCTGCAAACAAGTCAGTCACTCTCGGTAGTGACGTTACCGTTCCGACCATGCTCCCGCTGGCGTTAACCAAAGGTATCGACTCCGGCTCTGGCTGGGTTGGTGGCAGGACTAAGGGTGGTATCTGGTTCGATGGTAACTACCGCGATGCGGTGGTACGCTGGAACGGTCAGTATGTATGGGTGGCTGATAATGGTTCGCTCAAAGCAGCACCTACTAAACCGGATTCTGACTCGCCTTCTAATGGTGTGGTTATTGGTCCATAA

Genome Context

Tertiary structure

YP_011108742.1
ESMFold structure
Source ESMFold
pLDDT 76.2
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
A hybrid and poly-polish workflow for the complete and accurate assembly of phage genomes: a case study of ten przondoviruses Elek,C.K.A. and Adriaenssens,E.M. — 37463032 GenBank