Phage RBP Database

Genbank accession

QIW87627.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 0,96

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,48

Protein sequence

MVLRPIMVGGVPGCANIPGSGECQCWPEWTSDNAYIFGDVVQQGGVLYEARRDIPPGTPFLAADWAPYIPGATEIPPHNENSTYQQYQAVTFNDKLYTAGSLLSPGPFNPADWQEISVEGLVEVADSPTIAFGGDGSAGDPLTASVKLDPDPDNLITETANGLILTADNIPFPDPSQILISEGVTLRVDYVTGNDADADGTLAKPFATIAAAVGASDAGDMIEIYPGTYNGNFAPKSNTTVIARQDVQFTGNVTIGAAVTGVLVTDLFIDGDIILTNAGDFVEFRDVTVDNITATGNNPGVYVFDRVNVAVDVSIAGTGVGEFIFRGGIGQADFTNNSPGVMVVTDKDRTGNISHMNGYVILRDIGTILSLDSMADDTANAGLVVMSCSTFDIVTGFYGSVTKTGACRYAFQDFARENENVTPLTGPKFIVSNGRDVHGNYNPQFYTLPNGQTLNSHFNGIDNAIQALQESSPGGKLVPVDFGFSFTNGWNAGETLGAHVITRETIMPLDFNGSLFATDSSVLDATLNIMVGASVVGTVTIVDGEATFTSSQFNLDAGQVIRVVAVEEGTFDYAALTLVGHREVVYVT

Physico‐chemical properties

protein length:	588 AA
molecular weight:	62027,25080 Da
isoelectric point:	4,06066
aromaticity:	0,09014
hydropathy:	0,05816

Domain architecture

QIW87627.1

1 588 aa

STR 27–115 · STR 183–399 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.10.10.90
STR

G3DSA:2.10.10.90 IPR011050

cd12215
STR

cd12215 IPR012334

IPR012334
STR

IPR012334

IPR011459
Unmapped

IPR011459

QIW87627.1

1588 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1512
ATT

DC_1512 DC_1915

QIW87627.1

1588 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	27	115	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
cd12215	STR	DC_0226	27	51	InterPro cluster	ChiC_BD	Central	Low	Positional only	1 proteins / 1 hits
IPR011050	STR	IPR011050	183	389	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012334	STR	IPR012334	185	399	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR012334	STR	IPR012334	188	399	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011459	Unmapped	-	191	233	InterPro	Domain of unknown function DUF1565	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QIW87627.1

1 588 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	233	233	0,9654
Central domain	234	442	210	0,9509
C-terminal	443	588	145	0,8751

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Agrobacterium phage OLIVR4 [NCBI] · taxon 2723772

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Rhizogenic Agrobacterium biovar 1 [NCBI] · taxon 1183400

Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium

Genbank protein accession

QIW87627.1 [NCBI]

Genbank nucleotide accession

MT234341.1 [NCBI]

CDS location

range 50595 -> 52361
strand +

CDS

ATGGTTCTTCGTCCTATTATGGTCGGCGGTGTTCCGGGTTGCGCTAATATCCCCGGCAGCGGAGAATGCCAGTGCTGGCCCGAATGGACGTCGGATAACGCCTATATTTTCGGTGATGTCGTGCAGCAAGGCGGCGTCCTCTACGAAGCGCGCCGCGATATTCCGCCCGGTACGCCGTTTCTCGCTGCCGATTGGGCACCCTATATTCCCGGTGCCACGGAAATCCCCCCGCACAACGAAAATTCCACCTATCAACAGTATCAGGCGGTGACGTTCAATGACAAACTTTATACGGCGGGGTCACTCCTGTCGCCCGGTCCGTTTAACCCTGCCGATTGGCAGGAAATTTCCGTCGAAGGTCTTGTCGAAGTCGCCGACAGTCCGACGATAGCGTTCGGCGGCGATGGTTCGGCTGGCGATCCGCTTACCGCTTCCGTAAAGCTTGACCCTGACCCGGATAATCTGATTACCGAAACGGCAAACGGTCTCATCCTGACGGCTGATAATATCCCGTTCCCCGATCCTTCGCAGATTTTGATTTCCGAAGGCGTGACGCTGCGTGTCGATTATGTCACGGGTAACGATGCTGACGCCGACGGAACGCTTGCAAAACCTTTCGCGACCATTGCGGCAGCGGTCGGCGCTTCCGATGCTGGCGACATGATCGAAATCTACCCCGGCACGTATAACGGCAACTTTGCGCCGAAATCGAACACGACCGTCATTGCGCGACAGGATGTGCAATTCACCGGAAACGTCACCATTGGCGCGGCGGTAACGGGTGTTCTTGTCACCGATCTGTTCATTGACGGTGACATAATCCTGACGAATGCCGGTGATTTCGTCGAATTTCGTGACGTAACCGTTGATAACATCACGGCTACGGGAAATAACCCCGGTGTTTACGTTTTCGACCGTGTGAACGTCGCGGTTGATGTTTCCATAGCCGGAACGGGCGTGGGTGAGTTCATTTTTCGGGGTGGTATCGGTCAGGCCGATTTCACCAACAACTCACCGGGTGTAATGGTTGTCACTGACAAGGATCGCACCGGCAATATCAGTCACATGAACGGTTATGTCATCCTGCGTGATATCGGTACGATTTTGTCGCTCGATTCGATGGCTGATGACACTGCAAATGCTGGTCTTGTCGTCATGTCGTGCAGCACTTTCGACATTGTCACCGGTTTTTACGGTTCGGTGACAAAAACTGGCGCTTGCCGTTATGCGTTTCAGGATTTCGCCCGTGAAAATGAAAATGTAACTCCGCTGACAGGTCCGAAATTCATCGTCTCGAATGGTCGCGACGTGCACGGGAATTATAACCCTCAGTTCTACACGTTGCCGAACGGTCAAACGTTGAATTCCCATTTCAACGGAATCGATAACGCGATTCAGGCGCTTCAGGAATCGTCACCGGGTGGTAAACTTGTTCCGGTAGACTTCGGCTTCAGCTTCACGAACGGTTGGAATGCTGGTGAAACGCTCGGCGCGCATGTCATCACCCGTGAAACGATCATGCCGCTTGATTTCAACGGTTCGTTGTTCGCAACCGATAGTTCGGTTCTCGACGCAACCTTGAACATCATGGTCGGCGCGTCGGTCGTTGGAACCGTGACGATTGTTGACGGTGAAGCAACTTTCACAAGTTCGCAATTCAACCTTGACGCAGGTCAGGTCATCCGTGTCGTTGCGGTCGAAGAAGGAACGTTTGATTACGCTGCGCTGACCCTTGTCGGTCATCGTGAAGTCGTTTACGTTACCTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)