Phage RBP Database

Genbank accession

QIW87627.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 0,96

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,48

Seq2Symm

C3 confidence 0,475

C3	0,475
C1	0,008
D3	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MVLRPIMVGGVPGCANIPGSGECQCWPEWTSDNAYIFGDVVQQGGVLYEARRDIPPGTPFLAADWAPYIPGATEIPPHNENSTYQQYQAVTFNDKLYTAGSLLSPGPFNPADWQEISVEGLVEVADSPTIAFGGDGSAGDPLTASVKLDPDPDNLITETANGLILTADNIPFPDPSQILISEGVTLRVDYVTGNDADADGTLAKPFATIAAAVGASDAGDMIEIYPGTYNGNFAPKSNTTVIARQDVQFTGNVTIGAAVTGVLVTDLFIDGDIILTNAGDFVEFRDVTVDNITATGNNPGVYVFDRVNVAVDVSIAGTGVGEFIFRGGIGQADFTNNSPGVMVVTDKDRTGNISHMNGYVILRDIGTILSLDSMADDTANAGLVVMSCSTFDIVTGFYGSVTKTGACRYAFQDFARENENVTPLTGPKFIVSNGRDVHGNYNPQFYTLPNGQTLNSHFNGIDNAIQALQESSPGGKLVPVDFGFSFTNGWNAGETLGAHVITRETIMPLDFNGSLFATDSSVLDATLNIMVGASVVGTVTIVDGEATFTSSQFNLDAGQVIRVVAVEEGTFDYAALTLVGHREVVYVT

Physico‐chemical properties

protein length:	588 AA
molecular weight:	62027,25080 Da
isoelectric point:	4,06066
aromaticity:	0,09014
hydropathy:	0,05816

Domain architecture

QIW87627.1

1 588 aa

STR 27–115 · STR 183–399 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.10.10.90
STR

G3DSA:2.10.10.90 IPR011050

cd12215
STR

cd12215 IPR012334

IPR012334
STR

IPR012334

IPR011459
Unmapped

IPR011459

QIW87627.1

1588 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1512
ATT

DC_1512 DC_1915

QIW87627.1

1588 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	27	115	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
cd12215	STR	DC_0226	27	51	InterPro cluster	ChiC_BD	Central	Low	Positional only	1 proteins / 1 hits
IPR011050	STR	IPR011050	183	389	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012334	STR	IPR012334	185	399	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR012334	STR	IPR012334	188	399	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011459	Unmapped	-	191	233	InterPro	Domain of unknown function DUF1565	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QIW87627.1

1 588 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	233	233	0,9654
Central domain	234	442	210	0,9509
C-terminal	443	588	145	0,8751

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Agrobacterium phage OLIVR4 [NCBI] · taxon 2723772

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Rhizogenic Agrobacterium biovar 1 [NCBI] · taxon 1183400

Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium

Genbank protein accession

QIW87627.1 [NCBI]

Genbank nucleotide accession

MT234341.1 [NCBI]

CDS location

range 50595 -> 52361
strand +

CDS

ATGGTTCTTCGTCCTATTATGGTCGGCGGTGTTCCGGGTTGCGCTAATATCCCCGGCAGCGGAGAATGCCAGTGCTGGCCCGAATGGACGTCGGATAACGCCTATATTTTCGGTGATGTCGTGCAGCAAGGCGGCGTCCTCTACGAAGCGCGCCGCGATATTCCGCCCGGTACGCCGTTTCTCGCTGCCGATTGGGCACCCTATATTCCCGGTGCCACGGAAATCCCCCCGCACAACGAAAATTCCACCTATCAACAGTATCAGGCGGTGACGTTCAATGACAAACTTTATACGGCGGGGTCACTCCTGTCGCCCGGTCCGTTTAACCCTGCCGATTGGCAGGAAATTTCCGTCGAAGGTCTTGTCGAAGTCGCCGACAGTCCGACGATAGCGTTCGGCGGCGATGGTTCGGCTGGCGATCCGCTTACCGCTTCCGTAAAGCTTGACCCTGACCCGGATAATCTGATTACCGAAACGGCAAACGGTCTCATCCTGACGGCTGATAATATCCCGTTCCCCGATCCTTCGCAGATTTTGATTTCCGAAGGCGTGACGCTGCGTGTCGATTATGTCACGGGTAACGATGCTGACGCCGACGGAACGCTTGCAAAACCTTTCGCGACCATTGCGGCAGCGGTCGGCGCTTCCGATGCTGGCGACATGATCGAAATCTACCCCGGCACGTATAACGGCAACTTTGCGCCGAAATCGAACACGACCGTCATTGCGCGACAGGATGTGCAATTCACCGGAAACGTCACCATTGGCGCGGCGGTAACGGGTGTTCTTGTCACCGATCTGTTCATTGACGGTGACATAATCCTGACGAATGCCGGTGATTTCGTCGAATTTCGTGACGTAACCGTTGATAACATCACGGCTACGGGAAATAACCCCGGTGTTTACGTTTTCGACCGTGTGAACGTCGCGGTTGATGTTTCCATAGCCGGAACGGGCGTGGGTGAGTTCATTTTTCGGGGTGGTATCGGTCAGGCCGATTTCACCAACAACTCACCGGGTGTAATGGTTGTCACTGACAAGGATCGCACCGGCAATATCAGTCACATGAACGGTTATGTCATCCTGCGTGATATCGGTACGATTTTGTCGCTCGATTCGATGGCTGATGACACTGCAAATGCTGGTCTTGTCGTCATGTCGTGCAGCACTTTCGACATTGTCACCGGTTTTTACGGTTCGGTGACAAAAACTGGCGCTTGCCGTTATGCGTTTCAGGATTTCGCCCGTGAAAATGAAAATGTAACTCCGCTGACAGGTCCGAAATTCATCGTCTCGAATGGTCGCGACGTGCACGGGAATTATAACCCTCAGTTCTACACGTTGCCGAACGGTCAAACGTTGAATTCCCATTTCAACGGAATCGATAACGCGATTCAGGCGCTTCAGGAATCGTCACCGGGTGGTAAACTTGTTCCGGTAGACTTCGGCTTCAGCTTCACGAACGGTTGGAATGCTGGTGAAACGCTCGGCGCGCATGTCATCACCCGTGAAACGATCATGCCGCTTGATTTCAACGGTTCGTTGTTCGCAACCGATAGTTCGGTTCTCGACGCAACCTTGAACATCATGGTCGGCGCGTCGGTCGTTGGAACCGTGACGATTGTTGACGGTGAAGCAACTTTCACAAGTTCGCAATTCAACCTTGACGCAGGTCAGGTCATCCGTGTCGTTGCGGTCGAAGAAGGAACGTTTGATTACGCTGCGCTGACCCTTGTCGGTCATCGTGAAGTCGTTTACGTTACCTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)