Phage RBP Database

Genbank accession

XKB78978.1 [GenBank]

Protein name

tail fibers protein

RBP type

TF

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,94

Seq2Symm

C3 confidence 0,998

C3	0,998
C1	0,006
C6	0,002

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MDQEIKTVIQYPVGATEFDIPFDYLSRKFVRVSLVSDDNRRLLSNITEYRYVSKTRVKLLVDTSGFDRVEIRRFTSASERIVDFSDGSVLRAADLNVSQIQSAHIAEEARDAALMAMPQDDAGNLDARNRRIVRLAPGIDGTDAINKNQLDTTLGEAGGILSEIKGEKEQFYEYLEKFADDTTMIRGVTWVYNGGSAVGGETSIVINKPTAVFAVPYIEINGDRQEVGYQYDFNASTQTITLAKPLVAGDFLMAMTSESHLPLESLLAGTTGASSIGTKDGGNVQSALDNLGYYIVPESFGAKGDGVTDDTAAVQAAINAAKGKTLWLDASKMYICQNLVIPHAMTIAAGGRRQGGGLIPKGNSGPVVHSGDFILITSEQTVTLFNVTIDARGRPLTKVDGQRLNGLRQVDNTSGVYKSGFQLYNCNISGFSGLNIIGGASRSFGIIKDTQCESADLTCIRIQGVDWRIDHTYVGRSGTGHGIELLNESNVVSNCDSHSNKKSGVVYTQATGKTFFKLIACTLNSNGEHGVYIACPYMQPAGIIIVDNRFWNNSTSSDGVYSNITLSYGRGHIVVGNIHEAYQPADGSSSARAAYCVNLLNGARPAHMLDNYDPAYSYRTDFCNINVVDKINYNTHHIGSAKTFTVGVSSATSQAIGVFVDGESFPRASIGNGGIRFGKGDSAPAVGLGFDNNYPNHVVSFKGLAVLGAWDTSTFRVGGYRIWAGNGAGQLYFQYGADPTSQTDGKLFVGRTVSPPASSASSGNTGDIAIDSGFLYVCVAFNTWKRVALSTF

Physico‐chemical properties

protein length:	792 AA
molecular weight:	85041,12010 Da
isoelectric point:	5,83142
aromaticity:	0,09091
hydropathy:	-0,15303

Domain architecture

XKB78978.1

1 792 aa

ATT 2–127 · STR 293–612 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR005604
ATT

IPR005604 IPR011050

IPR012334
STR

IPR012334

XKB78978.1

1792 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0778
STR

DC_0778 DC_0520

DC_1893
STR

DC_1893

XKB78978.1

1792 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR005604	ATT	DC_0240	2	127	InterPro cluster	Bacteriophage T7 tail fibre protein-like, N-terminal domain	Central	Medium	Text match	1326 proteins / 1328 hits
IPR011050	STR	IPR011050	293	574	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012334	STR	IPR012334	298	612	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XKB78978.1

1 792 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	310	310	0,9918
Central domain	311	642	333	0,9833
C-terminal	643	792	149	0,8135

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage phiTH1 [NCBI] · taxon 3153334

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Klebsiella pneumoniae [NCBI] · taxon 573

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

XKB78978.1 [NCBI]

Genbank nucleotide accession

PP801331.1 [NCBI]

CDS location

range 2834 -> 5212
strand -

CDS

ATGGATCAAGAAATTAAAACAGTCATTCAGTACCCAGTAGGGGCCACTGAGTTCGACATCCCGTTCGACTACCTGTCCCGCAAGTTCGTCCGAGTGTCACTGGTGTCAGACGACAACCGCAGACTACTGAGCAACATCACTGAGTACCGCTACGTGTCTAAGACCAGAGTGAAGCTCCTTGTGGATACATCTGGGTTCGACCGTGTGGAAATCCGACGGTTCACCTCAGCGTCTGAGCGAATCGTTGACTTCAGTGATGGCTCGGTTCTGCGCGCTGCTGACCTTAACGTATCTCAGATACAGTCGGCACATATCGCAGAGGAAGCACGTGATGCGGCACTCATGGCCATGCCTCAGGATGATGCGGGTAACCTTGATGCTCGAAATCGTAGAATAGTACGGTTGGCTCCGGGTATCGACGGTACGGACGCAATCAACAAGAACCAGCTTGATACAACGCTTGGTGAGGCTGGCGGAATCCTCTCAGAGATAAAGGGTGAAAAGGAACAGTTCTACGAGTACCTTGAGAAATTCGCAGACGATACCACGATGATTCGTGGAGTGACTTGGGTCTACAACGGGGGCTCGGCAGTCGGTGGCGAGACGTCTATCGTAATCAATAAACCGACAGCCGTGTTTGCTGTACCGTACATTGAGATAAACGGTGACAGACAAGAGGTTGGCTATCAGTACGACTTCAACGCCAGTACCCAGACAATCACTTTAGCGAAGCCGTTGGTGGCTGGTGACTTCCTGATGGCCATGACCTCTGAGTCGCATCTGCCACTGGAGTCGCTTCTTGCTGGAACAACTGGTGCATCTTCGATTGGTACCAAGGATGGTGGTAACGTACAATCTGCGCTGGATAACCTTGGGTACTACATCGTTCCAGAGTCGTTTGGTGCTAAGGGTGACGGTGTGACAGATGATACCGCAGCAGTCCAAGCAGCTATAAATGCAGCTAAAGGCAAGACTCTGTGGCTAGACGCATCTAAGATGTACATTTGTCAGAACTTGGTCATACCACATGCGATGACTATTGCGGCAGGAGGTCGCAGGCAGGGAGGCGGTCTGATTCCTAAAGGTAACTCAGGTCCTGTAGTACACTCCGGGGACTTCATCTTGATTACCTCCGAGCAGACCGTGACATTGTTCAACGTTACGATTGATGCCCGAGGTCGTCCACTGACTAAGGTAGACGGTCAACGCCTGAACGGTCTACGACAGGTTGATAATACCTCTGGTGTCTACAAGTCTGGTTTCCAGCTGTATAACTGCAACATCTCAGGATTCTCTGGGCTCAACATCATTGGTGGCGCTTCTCGCTCCTTTGGTATCATTAAGGACACTCAGTGTGAATCTGCCGACCTGACCTGTATTCGTATCCAAGGCGTTGATTGGCGAATCGACCATACCTATGTTGGGCGTAGTGGGACTGGTCACGGCATTGAGTTGCTTAACGAGTCAAACGTGGTGTCTAACTGTGATTCACATTCCAACAAGAAGTCTGGTGTTGTGTACACGCAGGCAACCGGGAAGACCTTCTTTAAGCTCATCGCCTGTACGCTGAACTCTAACGGAGAACACGGCGTTTACATTGCGTGTCCGTACATGCAACCTGCTGGTATCATCATTGTTGATAACCGCTTCTGGAACAACTCAACGTCTTCAGACGGAGTCTATAGCAACATCACGCTTAGCTACGGTCGAGGGCACATTGTTGTTGGCAACATCCACGAGGCGTACCAACCAGCAGACGGCAGCAGCTCGGCAAGGGCAGCTTACTGTGTTAACCTGCTGAACGGTGCCCGTCCGGCTCACATGCTTGACAACTACGACCCGGCGTATTCCTATCGGACCGACTTCTGCAACATTAACGTCGTCGATAAGATTAACTACAATACCCACCACATTGGTAGCGCCAAGACGTTCACCGTGGGCGTCTCGTCAGCCACCTCTCAGGCTATTGGCGTATTTGTTGACGGGGAGTCATTCCCGAGAGCGTCCATTGGTAACGGCGGAATCCGGTTCGGTAAGGGTGACTCTGCGCCAGCTGTAGGGCTTGGCTTCGACAACAACTATCCGAACCACGTGGTATCGTTCAAGGGCCTTGCTGTTCTCGGGGCTTGGGACACCAGTACATTCAGGGTCGGTGGGTATCGAATCTGGGCAGGCAACGGGGCAGGTCAGCTGTACTTCCAGTATGGTGCGGACCCTACGAGCCAGACGGACGGCAAACTGTTCGTTGGGCGCACTGTGTCGCCACCAGCTTCTTCTGCATCTTCTGGTAACACAGGGGATATCGCCATCGACTCAGGGTTCCTTTATGTGTGCGTAGCGTTCAACACATGGAAACGGGTTGCACTTTCTACGTTCTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)