Protein

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Genbank accession
YP_010662485.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MPVSNTPIQTASTSSDAGSLSAIVNAVITRLSQTVIQSNLNETQVGTLADLDTDVKSSIVGAINDLVSKFDSGELVATYIGQLQDLNTSVKSNVVAAINEVNNKVGDIGELETEETSNVVAAINEIFAVVQGLGDIDSGEIFNQLNARVVKTGDTMSGVLNILSGVPSADTPLLGLGWNTLLPSWKVYLDSAESYAMFAFDKTTGLVQGRRQTLDKNGNLTVSGTLRTGSGTALFDTDGSIIGTAWAAVGGSANAISSINAKFAGYFQSTGGTITGKLVENIGFTGNEVTFRDLKYGNATFRSWEEIVDSTENYVLRSHNKISDTVIQTALKLGLNGNMEIAGTFKSGGGLTVGTATMGTDGGITGTAWNAFGSSPDAISAIQNYVSGRLAAFVGFPGGGTTGQALVKASNTANDFTWGGPFAPVVHTHVISDTTGLQSALDLKANAANAALTGNPTAPTPTLGDNDTSIATTAFVQAAIGSMGKRSLTISTAAPSGGVDGDVWFQTEV
Physico‐chemical
properties
protein length:509 AA
molecular weight: 52352,53920 Da
isoelectric point:4,48308
aromaticity:0,06483
hydropathy:0,04833

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RL38J1
[NCBI] 		2663232 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010662485.1 [NCBI]
Genbank nucleotide accession
NC_070888 [NCBI]
CDS location
range 64438 -> 65967
strand +
CDS
ATGCCCGTAAGCAACACACCAATTCAAACGGCTTCTACGAGTTCTGATGCTGGTTCTCTTTCGGCTATCGTCAATGCTGTCATCACTCGGTTGTCTCAGACTGTCATCCAGTCGAACCTGAACGAAACACAGGTCGGAACACTGGCTGATCTCGACACTGACGTCAAGTCGAGTATCGTAGGTGCCATCAACGATCTCGTGAGCAAGTTCGACTCCGGTGAACTCGTTGCTACCTACATCGGCCAGCTTCAGGATCTAAACACTTCTGTCAAGTCTAACGTCGTAGCTGCAATCAACGAAGTCAACAACAAAGTCGGTGACATCGGTGAACTCGAGACTGAAGAGACCAGCAACGTCGTAGCTGCCATCAACGAGATCTTTGCGGTGGTTCAAGGTCTCGGAGACATCGACAGCGGCGAAATCTTCAACCAGTTGAATGCACGTGTCGTCAAGACCGGTGATACGATGTCTGGAGTGCTCAACATCCTCTCTGGTGTTCCGAGTGCAGATACTCCACTTCTCGGTCTCGGATGGAACACTCTCCTTCCTTCTTGGAAAGTGTATCTGGACTCCGCTGAGTCGTACGCTATGTTCGCATTCGACAAGACGACTGGTCTGGTTCAAGGACGTCGTCAGACTCTCGACAAGAACGGTAACCTCACTGTCTCTGGTACTCTCCGAACTGGCAGTGGCACAGCTCTCTTCGACACCGATGGTTCGATCATCGGTACTGCATGGGCTGCGGTCGGTGGATCTGCGAATGCCATCTCTTCGATCAACGCGAAATTCGCTGGCTACTTCCAGTCGACCGGCGGAACGATCACCGGCAAGCTCGTTGAGAACATCGGCTTCACTGGCAACGAAGTAACGTTCAGAGATCTGAAGTACGGCAACGCAACTTTCCGTAGCTGGGAAGAGATCGTCGATTCTACAGAGAACTACGTTCTTCGCTCTCACAACAAAATCAGCGACACTGTCATTCAGACTGCTCTGAAGCTCGGCTTGAACGGCAACATGGAAATTGCAGGTACGTTTAAATCCGGCGGAGGCTTGACTGTCGGCACTGCTACGATGGGCACGGACGGCGGCATCACTGGTACTGCATGGAATGCTTTTGGTTCGTCTCCTGATGCTATCAGCGCGATCCAGAATTACGTCTCTGGTCGACTTGCTGCTTTTGTTGGTTTCCCTGGTGGTGGAACGACTGGACAAGCTCTCGTCAAAGCTTCGAACACTGCAAATGACTTCACATGGGGTGGACCGTTTGCTCCTGTCGTTCACACTCATGTCATTTCAGACACGACTGGTCTCCAGTCTGCTCTGGACTTGAAAGCGAACGCTGCAAACGCTGCACTCACTGGCAATCCGACAGCTCCGACTCCGACTCTCGGTGACAACGATACGTCCATCGCGACGACTGCTTTCGTTCAGGCAGCTATCGGCAGCATGGGCAAGCGAAGCCTCACGATCTCGACTGCTGCTCCATCTGGTGGAGTCGACGGAGATGTCTGGTTCCAGACGGAGGTGTGA

Tertiary structure

PDB ID
9fcbc60e69a14596e89f3ad80e0584bbd8d2974c50019dad8cb1bae6a8486d31
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6869
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage vB_RLeM_RL38JI Gunathilake,D., Bhat,S., Yost,C.K. and Hynes,M.F. 2022-09-15 — GenBank