Protein

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UniProt accession
A0A8S5NCX5 [UniProt]
Protein name
Pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MDFDKIKQNILNSSETSTSESENIAGSELHEEFEINNFLPEFEPLKISGKNLAQQYVSAFNTGMNIYQCLNYLQGYVYTLVTAMNETIEAWNTVVPLLEQATKEWTDEEFDYKWSILKPQVIELVTNLTIETFNKAWEDLKPVVIKLAQDTTDAEFKKQWDILKPQVITLVEETTTNKFNEEWEKLKPTIIQLSTNTTIEQFNRSWTELKPQVIELAQTTTNTKFDEKWTELRPQLIELAQTTTSDKFHEKWTELQPTLTETVNNLAKTQTTTTFNAEWTKLKPQIIELSQTTTSTKFDEKWTELQPTLNTTVENLVNTNLEAFKSTLWQEVTKNESFPFLLPENFGAVGDGQTDDHTAFNLCFAKASETNKNVLLSTKTYLIGRILRATGGFSIIGLNTNIVVNDNDFLTQTQNITFKNIFFLNKAPSNNVRFLIYKARDTYFDNCEFIDIGSIYGELLENTIKTQLLNNCRLLNTSIYNKKQGVTPSENKVYVVNNTLLLNTNNICHSFWCDKSGSKIYFNNCSFNSEFTKFNVTMFPTVDDMIFNNCSFNVKNTLGLIGLLTVGTDTYIGFNKCNINAKSIVNNSLNNYLYLNIKDSVINVDKIMDNSQECSLWLENNQMDIKPIINSGTGKVNLVEIQQKYSNTTQNVFPWIGEIPSTCVNNVIINNNDGAYYVTTENEDKTIIKLDYYTSLLANYTPNAPYYEVQILLPSLDLTGYELNLSSMNCNLFALKNDSYELIDYVHLYLDDTTVSTIINEQGEFEHTEITLKLLQAYAKLKTDTAVAGIMNIDTSFTFIFEKTS
Physico‐chemical
properties
protein length:805 AA
molecular weight: 92105,69060 Da
isoelectric point:4,67537
aromaticity:0,10807
hydropathy:-0,33193

Domains

Domains [InterPro]
DC_1178
STR
172–789
DC_1178
IPR012334
STR
342–532
IPR012334
IPR011050
STR
344–605
IPR011050
A0A8S5NCX5
1 805
Architecture
STR
STR 172-789 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A8S5NCX5
1 805
Domain Start End Length (AA) Confidence
N-terminal 1 357 357 0,9942
Central domain 358 634 278 0,9344
C-terminal 635 805 170 0,9377
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-357
Central
358-634
C-terminal
635-805

Taxonomy

  Name Taxonomy ID Lineage
Phage Podoviridae sp. ctTZV6
[NCBI] 		2826556 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAD92080.1 [NCBI]
Genbank nucleotide accession
BK015127 [NCBI]
CDS location
range 8936 -> 11353
strand +
CDS
ATGGATTTTGATAAAATAAAACAAAATATTTTAAATTCAAGTGAAACATCTACAAGTGAAAGCGAAAATATAGCTGGTTCAGAACTCCATGAAGAATTTGAGATCAATAACTTTTTACCCGAATTCGAACCTTTAAAGATAAGTGGGAAAAATTTAGCACAACAATATGTTAGTGCGTTTAATACAGGTATGAATATTTACCAATGTTTAAATTACTTACAAGGTTATGTTTATACATTGGTAACGGCAATGAATGAAACAATTGAAGCATGGAACACAGTCGTGCCACTATTAGAACAAGCCACAAAAGAATGGACTGACGAAGAGTTTGACTATAAATGGTCAATTCTAAAACCACAAGTTATTGAGCTTGTGACAAACTTAACAATTGAAACATTCAATAAGGCATGGGAAGACTTAAAACCGGTTGTTATTAAATTGGCACAGGATACAACAGACGCCGAATTTAAAAAACAATGGGATATTTTAAAACCGCAAGTTATTACACTGGTGGAAGAAACAACAACAAATAAATTTAATGAGGAATGGGAAAAATTAAAACCGACTATTATACAATTATCAACAAATACAACAATTGAACAATTTAATAGATCATGGACCGAATTAAAACCACAGGTTATTGAGTTAGCTCAAACTACAACTAACACTAAGTTCGACGAGAAATGGACGGAATTACGTCCACAATTAATTGAACTAGCACAAACGACAACGAGTGATAAGTTTCACGAAAAATGGACAGAATTACAGCCGACGTTAACAGAAACTGTTAATAATTTAGCTAAAACACAAACAACTACTACATTTAATGCAGAATGGACTAAGTTAAAACCACAAATTATTGAACTTTCACAAACAACAACTAGCACGAAATTCGACGAAAAATGGACGGAATTACAACCAACATTAAACACAACCGTTGAAAATCTAGTTAATACAAATTTAGAAGCATTTAAAAGTACATTGTGGCAAGAGGTCACTAAGAATGAAAGTTTTCCATTTCTACTACCCGAGAATTTTGGTGCTGTGGGAGATGGTCAAACGGATGATCATACAGCTTTTAATTTATGCTTTGCGAAAGCAAGCGAAACAAATAAAAATGTTTTATTAAGTACTAAAACATATTTAATTGGTAGAATTTTACGTGCTACCGGTGGTTTTAGTATTATAGGATTAAACACTAACATTGTTGTAAATGATAATGATTTTTTAACTCAAACACAAAATATTACTTTTAAAAATATATTTTTTCTTAATAAAGCACCTTCAAATAACGTTAGATTTTTAATTTATAAAGCACGTGATACTTATTTCGATAACTGTGAATTTATTGATATAGGTTCTATTTATGGTGAATTATTAGAAAATACTATAAAAACACAATTATTAAATAACTGTAGGTTATTAAACACATCTATTTATAATAAAAAACAAGGTGTTACACCATCAGAAAATAAAGTTTATGTAGTAAACAACACACTTCTTCTTAATACTAATAATATATGTCACTCTTTTTGGTGTGATAAAAGTGGAAGTAAAATTTATTTTAATAATTGTAGTTTTAATTCAGAGTTTACTAAATTTAATGTTACCATGTTCCCAACAGTTGACGATATGATATTTAATAATTGTAGTTTTAATGTTAAAAATACATTAGGTTTAATTGGCTTGTTAACAGTTGGTACGGATACTTATATTGGTTTTAATAAGTGTAATATTAATGCAAAGTCAATTGTTAATAATAGTTTAAATAACTATTTATATTTAAATATTAAAGATAGTGTTATTAATGTTGATAAAATAATGGATAATAGTCAAGAATGTAGTTTATGGTTAGAAAACAATCAAATGGATATTAAACCTATTATTAATAGTGGCACAGGTAAAGTAAATTTAGTTGAGATTCAACAAAAGTATAGTAATACCACTCAAAATGTTTTTCCATGGATCGGTGAAATACCATCCACTTGTGTAAACAATGTTATAATAAATAACAATGACGGTGCATATTATGTAACTACAGAAAATGAAGATAAAACAATTATTAAATTGGATTATTATACTAGTTTATTGGCTAATTACACACCAAATGCACCTTATTATGAAGTTCAAATATTATTACCTAGTTTAGATTTAACAGGGTATGAACTTAATTTATCATCTATGAATTGTAATTTATTCGCGCTAAAAAATGATAGTTATGAATTAATTGACTATGTGCATTTATATTTAGATGACACTACTGTATCGACTATTATTAATGAACAGGGAGAATTTGAGCACACAGAAATCACATTAAAACTTTTACAGGCCTATGCTAAACTTAAAACAGATACAGCAGTAGCCGGTATAATGAATATTGACACAAGTTTTACATTTATTTTTGAAAAAACTAGCTAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0016829 lyase activity Molecular Function IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
77023265d852d2d5c30ad9ba33b6c6fb13c15666f609d6bcfe58f048148a16da
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6933
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50