Protein

View in Explore
Genbank accession
YP_009191789.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,95
Seq2Symm
C3 confidence 0,908
C3 0,908
C6 0,643
C1 0,003
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MATPRTVNTWPLNGVVREFDITFDYLSRNFIQVMLIGGDFKKLVLGTDYTFVTNTRIRTTLAYQTPYTAIEIRRVTSTTERLVEFQDASILHAQDLNIDALQVMHVAEEAREAATETIGVNGDGQLDARGRKIVNLGNAVDPQDALPLGQYLADKGGAAESAAAAAQSASNAATSASQAQSSNLAAALNASAAESARAAAVAAQGTATTEANRAKTEADRANTRANDSAASAGASATSAGQAAGSATNAANSATAAQQSASTAQTQLNLFQDQYWGVYASDPVTGPGGRPRVTGVFYFNSATGTHRVWNGTAWANAPQGPAGTPGTNGTNGATGPKGKDGSVPRRGWRVAYAATNKIRFFPYYTEQVRIRQNNAGSGEWPIIYQDESSATFTEYTLGQGTFTGLSNEVLYVLVPYGTNSANELSIAPITASEASPTFDPEYGWIRGGIYLSQKVPIFGAFMLVGGQFKDDDTTRGVVSTANQPPRSLSIRRSTNLTIPQAQSANIQQVSFICLSATVQGYSNVAVGLPNTGGGFYSTHVVQNTGTTTEVQIDGSLCAFPNGPLFSASIGLQHPFSAGGYNLKTKLINANVGDITANGAGPLGMNCSLNAMIFDRQ
Physico‐chemical
properties
protein length:615 AA
molecular weight: 64519,54400 Da
isoelectric point:5,85001
aromaticity:0,08130
hydropathy:-0,23317

Domains

View on InterPro
Domain architecture
YP_009191789.1
1 615 aa
ATT 3–128 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Taxonomy

Phage
Delftia phage IME-DE1 [NCBI] · taxon 1647385
Uroviricota Caudoviricetes Autographivirales Piedvirus Piedvirus IMEDE1
Host
Delftia sp. 670 [NCBI] · taxon 1537702
Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Delftia

Coding sequence (CDS)

Genbank protein accession
YP_009191789.1 [NCBI]
Genbank nucleotide accession
NC_028702.1 [NCBI]
CDS location
range 9339 -> 11186
strand +
CDS
ATGGCAACGCCACGCACTGTCAATACTTGGCCCCTGAACGGGGTCGTCCGGGAGTTCGACATTACGTTCGACTACCTCTCCCGTAACTTCATCCAGGTCATGTTGATCGGTGGAGACTTCAAGAAGCTGGTCCTGGGCACCGACTACACGTTCGTGACCAACACCCGCATTCGCACTACCCTCGCCTACCAGACGCCCTACACGGCCATCGAGATTCGCCGGGTGACTTCCACCACGGAACGTCTGGTGGAGTTCCAGGACGCATCCATCCTGCACGCACAGGACCTGAACATCGACGCGCTCCAAGTGATGCACGTTGCTGAGGAGGCCCGTGAGGCTGCTACCGAGACCATCGGGGTCAACGGGGACGGTCAACTGGATGCCCGTGGTCGCAAGATCGTGAACCTCGGGAACGCTGTGGACCCTCAGGATGCCCTGCCCCTCGGCCAGTATCTGGCTGACAAGGGAGGCGCTGCTGAGTCCGCTGCTGCCGCTGCCCAATCCGCTTCCAATGCGGCCACCAGTGCATCCCAGGCCCAGTCCAGCAACCTCGCTGCTGCCCTGAATGCAAGTGCTGCTGAGTCCGCTCGTGCAGCCGCTGTAGCTGCCCAGGGGACTGCCACGACCGAGGCCAACCGTGCGAAGACGGAAGCCGACCGGGCCAACACCCGTGCGAACGACTCCGCAGCCTCCGCAGGAGCCTCTGCAACGTCCGCAGGCCAAGCAGCAGGTTCTGCCACCAATGCGGCCAATAGCGCCACTGCGGCCCAGCAGAGTGCCTCCACGGCCCAAACCCAGTTGAACCTGTTTCAGGACCAATACTGGGGCGTGTACGCCTCGGACCCTGTGACAGGCCCTGGAGGTCGCCCACGGGTGACAGGCGTGTTCTACTTCAACAGTGCCACCGGAACCCATCGGGTCTGGAACGGGACTGCATGGGCGAATGCTCCTCAGGGTCCTGCGGGAACCCCCGGGACGAACGGGACCAATGGAGCTACCGGGCCAAAAGGTAAGGACGGCTCTGTTCCTCGCCGTGGATGGAGGGTCGCCTATGCGGCCACCAATAAGATTCGCTTCTTCCCGTACTACACGGAGCAAGTGCGTATCCGGCAGAACAACGCAGGCTCCGGTGAGTGGCCTATCATCTACCAAGATGAGTCCAGTGCAACCTTCACGGAATACACGCTGGGCCAGGGCACATTCACGGGTCTCTCCAACGAGGTCCTCTATGTGCTGGTTCCCTACGGGACCAATAGCGCCAACGAACTGAGCATCGCGCCGATCACCGCATCGGAGGCAAGCCCTACGTTTGACCCTGAGTACGGATGGATTCGTGGAGGCATCTACCTGAGCCAGAAGGTTCCGATCTTCGGTGCATTCATGCTGGTAGGTGGGCAGTTCAAGGACGACGACACCACTCGTGGGGTGGTCTCCACTGCAAACCAGCCTCCCCGTTCCTTGAGCATCCGCCGTTCGACCAACCTGACGATCCCTCAGGCTCAGTCCGCGAACATCCAGCAGGTGTCCTTCATCTGCCTGTCAGCTACTGTCCAAGGCTACAGTAACGTGGCCGTGGGCCTGCCGAACACTGGCGGTGGCTTCTACAGCACCCATGTGGTGCAGAACACGGGGACAACTACCGAGGTTCAAATCGACGGCTCCCTGTGTGCCTTCCCGAACGGACCTCTGTTCTCCGCATCCATTGGTCTCCAGCACCCCTTCAGTGCTGGTGGCTACAACCTGAAGACCAAGCTCATCAACGCCAACGTGGGTGATATCACGGCGAACGGCGCAGGCCCTCTGGGCATGAACTGTTCCCTGAACGCAATGATCTTCGACCGACAATAA

Genome Context

Tertiary structure

YP_009191789.1
ESMFold structure
Source ESMFold
pLDDT 70.3
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Isolation and genomic analysis of Delftia bacteriophage IME-DE1 Kang,H. 2020-11-19 — GenBank