Protein

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Genbank accession
YP_009191789.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MATPRTVNTWPLNGVVREFDITFDYLSRNFIQVMLIGGDFKKLVLGTDYTFVTNTRIRTTLAYQTPYTAIEIRRVTSTTERLVEFQDASILHAQDLNIDALQVMHVAEEAREAATETIGVNGDGQLDARGRKIVNLGNAVDPQDALPLGQYLADKGGAAESAAAAAQSASNAATSASQAQSSNLAAALNASAAESARAAAVAAQGTATTEANRAKTEADRANTRANDSAASAGASATSAGQAAGSATNAANSATAAQQSASTAQTQLNLFQDQYWGVYASDPVTGPGGRPRVTGVFYFNSATGTHRVWNGTAWANAPQGPAGTPGTNGTNGATGPKGKDGSVPRRGWRVAYAATNKIRFFPYYTEQVRIRQNNAGSGEWPIIYQDESSATFTEYTLGQGTFTGLSNEVLYVLVPYGTNSANELSIAPITASEASPTFDPEYGWIRGGIYLSQKVPIFGAFMLVGGQFKDDDTTRGVVSTANQPPRSLSIRRSTNLTIPQAQSANIQQVSFICLSATVQGYSNVAVGLPNTGGGFYSTHVVQNTGTTTEVQIDGSLCAFPNGPLFSASIGLQHPFSAGGYNLKTKLINANVGDITANGAGPLGMNCSLNAMIFDRQ
Physico‐chemical
properties
protein length:615 AA
molecular weight: 64519,54400 Da
isoelectric point:5,85001
aromaticity:0,08130
hydropathy:-0,23317

Domains

Domains [InterPro]
DC_0044
STR
1–609
DC_0044
IPR005604
ATT
3–128
IPR005604
YP_009191789.1
1 615
Architecture
ATT
STR
ATT 1-128 | STR 129-609 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Delftia phage IME-DE1
[NCBI] 		1647385 Uroviricota > Caudoviricetes > Autographivirales > Piedvirus > Piedvirus IMEDE1
Host Delftia sp. 670
[NCBI] 		1537702 Bacteria > Proteobacteria > Betaproteobacteria > Burkholderiales > Comamonadaceae > Delftia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009191789.1 [NCBI]
Genbank nucleotide accession
NC_028702.1 [NCBI]
CDS location
range 9339 -> 11186
strand +
CDS
ATGGCAACGCCACGCACTGTCAATACTTGGCCCCTGAACGGGGTCGTCCGGGAGTTCGACATTACGTTCGACTACCTCTCCCGTAACTTCATCCAGGTCATGTTGATCGGTGGAGACTTCAAGAAGCTGGTCCTGGGCACCGACTACACGTTCGTGACCAACACCCGCATTCGCACTACCCTCGCCTACCAGACGCCCTACACGGCCATCGAGATTCGCCGGGTGACTTCCACCACGGAACGTCTGGTGGAGTTCCAGGACGCATCCATCCTGCACGCACAGGACCTGAACATCGACGCGCTCCAAGTGATGCACGTTGCTGAGGAGGCCCGTGAGGCTGCTACCGAGACCATCGGGGTCAACGGGGACGGTCAACTGGATGCCCGTGGTCGCAAGATCGTGAACCTCGGGAACGCTGTGGACCCTCAGGATGCCCTGCCCCTCGGCCAGTATCTGGCTGACAAGGGAGGCGCTGCTGAGTCCGCTGCTGCCGCTGCCCAATCCGCTTCCAATGCGGCCACCAGTGCATCCCAGGCCCAGTCCAGCAACCTCGCTGCTGCCCTGAATGCAAGTGCTGCTGAGTCCGCTCGTGCAGCCGCTGTAGCTGCCCAGGGGACTGCCACGACCGAGGCCAACCGTGCGAAGACGGAAGCCGACCGGGCCAACACCCGTGCGAACGACTCCGCAGCCTCCGCAGGAGCCTCTGCAACGTCCGCAGGCCAAGCAGCAGGTTCTGCCACCAATGCGGCCAATAGCGCCACTGCGGCCCAGCAGAGTGCCTCCACGGCCCAAACCCAGTTGAACCTGTTTCAGGACCAATACTGGGGCGTGTACGCCTCGGACCCTGTGACAGGCCCTGGAGGTCGCCCACGGGTGACAGGCGTGTTCTACTTCAACAGTGCCACCGGAACCCATCGGGTCTGGAACGGGACTGCATGGGCGAATGCTCCTCAGGGTCCTGCGGGAACCCCCGGGACGAACGGGACCAATGGAGCTACCGGGCCAAAAGGTAAGGACGGCTCTGTTCCTCGCCGTGGATGGAGGGTCGCCTATGCGGCCACCAATAAGATTCGCTTCTTCCCGTACTACACGGAGCAAGTGCGTATCCGGCAGAACAACGCAGGCTCCGGTGAGTGGCCTATCATCTACCAAGATGAGTCCAGTGCAACCTTCACGGAATACACGCTGGGCCAGGGCACATTCACGGGTCTCTCCAACGAGGTCCTCTATGTGCTGGTTCCCTACGGGACCAATAGCGCCAACGAACTGAGCATCGCGCCGATCACCGCATCGGAGGCAAGCCCTACGTTTGACCCTGAGTACGGATGGATTCGTGGAGGCATCTACCTGAGCCAGAAGGTTCCGATCTTCGGTGCATTCATGCTGGTAGGTGGGCAGTTCAAGGACGACGACACCACTCGTGGGGTGGTCTCCACTGCAAACCAGCCTCCCCGTTCCTTGAGCATCCGCCGTTCGACCAACCTGACGATCCCTCAGGCTCAGTCCGCGAACATCCAGCAGGTGTCCTTCATCTGCCTGTCAGCTACTGTCCAAGGCTACAGTAACGTGGCCGTGGGCCTGCCGAACACTGGCGGTGGCTTCTACAGCACCCATGTGGTGCAGAACACGGGGACAACTACCGAGGTTCAAATCGACGGCTCCCTGTGTGCCTTCCCGAACGGACCTCTGTTCTCCGCATCCATTGGTCTCCAGCACCCCTTCAGTGCTGGTGGCTACAACCTGAAGACCAAGCTCATCAACGCCAACGTGGGTGATATCACGGCGAACGGCGCAGGCCCTCTGGGCATGAACTGTTCCCTGAACGCAATGATCTTCGACCGACAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a16239f91ce5a2af9d5204222ca41550df7f48210998cad10d90877c90305146
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7032
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and genomic analysis of Delftia bacteriophage IME-DE1 Kang,H. 2020-11-19 — GenBank