Phage RBP Database

Genbank accession

XMN81927.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,89

Seq2Symm

C1 confidence 0,966

C1	0,966
C3	0,005
I	0,002

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MALIYHYTRNEDGTFNVVRYRDNPMNFVVNNVPDGVPIRIFIDEICEDNDVTEDFDALKEDAIFYIVESAGGGVVKGVMKIFSVILKPLAKLLSPSAKGLSSNFANSQADSPNNSLTDRNNKPRPYERSYDICGTVQTVPNNLMTTYKIFNDTGRIIEYGYYDAGRGHLDIKAEDVTDGDTRVQDIDGSSVAIYAPYTSPNNTSTPQLQIGEVIDQQLYTTIESNEIDGITLRAPNDLGVTFSGETAVVTLSGTTGRITETAGGVDFTEDFSVGDIANLNAWTTNTVNIGDHYTVTSVSETVIELDVSSRLLSWSSASGNPIRGSDGENSIRPTDTLDKTLTDWVSINRSTVERIVVNIAAPNGMYKDNGSKLTMSATAEVQYQALDESGAPFGPIYTATGTITGRSSDYNGVTIYGYLPTASRVRVRARRTSDTDRGFNGTVSDEIVYANLYGQSVDTTPHYGNRTTVHSARKQTPRATEVRQPQLRMIATEMVFKYLGGGVFDTVMTPNKQAVQSLIRLARDPVVGGLDLSVANMDALLETQEEVESYFGSSDAGEFCYTFDDYKTTMQEIVTIIAEAIFCTPYRKGADILLDFERPRLGPEMVFTHRSKVKTSEKWSRTFNDPQVFDSLKFSYIDPVTNVKETISIPETGGLKTETYDSKGVRNKKQAYWLAHRRHQKNILRKVNVSFTATEEGIFARPNRPISVVKGSRMATYDGYITSVDGLTVHLSSPVQFTAGEPHSLVLKTRDGGAQSIPVIEGPDNRSVIMLSVPQEAIYTGNSALKTEFSFGSDGRHAAQMIMVSTVEPSDDRTVRITGFNYDADYYKYDGVSPFGRAFSDGFSNGFS

Physico‐chemical properties

protein length:	848 AA
molecular weight:	93316,80080 Da
isoelectric point:	5,00032
aromaticity:	0,09080
hydropathy:	-0,36804

Domain architecture

XMN81927.1

1 848 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

NF040662
Unmapped

NF040662

XMN81927.1

1848 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0118
STR

DC_0118 DC_0808

XMN81927.1

1848 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
NF040662	Unmapped	-	350	828	NCBIfam	host specificity factor TipJ family phage tail protein	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XMN81927.1

1 848 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	226	226	0,9869
Central domain	227	425	200	0,5037
C-terminal	426	848	422	0,1770

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Salmonella phage W5_chr3 [NCBI] · taxon 3385020

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Salmonella typhimurium [NCBI] · taxon 90371

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

XMN81927.1 [NCBI]

Genbank nucleotide accession

PP996006.1 [NCBI]

CDS location

range 40467 -> 43013
strand -

CDS

TTGGCGCTGATATACCACTACACAAGAAACGAGGATGGTACTTTTAACGTGGTTCGATACCGCGACAACCCTATGAATTTTGTAGTAAATAATGTGCCTGATGGGGTTCCTATTCGCATATTTATCGATGAAATATGTGAAGATAACGACGTAACAGAAGATTTTGATGCGTTAAAAGAAGATGCAATCTTTTATATTGTTGAGTCTGCGGGGGGTGGCGTTGTAAAAGGGGTAATGAAAATATTCAGCGTCATCCTTAAACCACTTGCAAAGCTTTTAAGCCCATCGGCAAAAGGCTTATCTTCTAATTTTGCAAACTCGCAGGCGGACTCGCCAAACAATAGCCTTACAGACCGCAACAATAAGCCACGACCATATGAGCGCAGTTATGACATATGTGGCACGGTACAAACCGTACCGAATAATCTTATGACAACGTACAAAATATTCAATGATACGGGCCGCATCATTGAATATGGGTATTATGACGCCGGGAGAGGTCATCTCGATATAAAAGCGGAAGATGTTACCGATGGGGACACGCGGGTGCAGGATATTGACGGGTCGTCCGTCGCGATATACGCCCCGTACACATCACCTAATAACACATCAACACCACAGTTACAGATAGGAGAGGTTATAGACCAGCAGTTGTACACCACTATAGAGTCCAACGAGATAGACGGCATAACGCTTAGGGCCCCAAATGATTTAGGCGTAACATTCAGCGGAGAGACGGCAGTAGTTACGTTGTCGGGGACAACAGGAAGAATAACAGAAACTGCCGGTGGGGTTGACTTCACAGAAGATTTTTCTGTAGGCGATATCGCTAACTTAAATGCCTGGACAACTAACACCGTTAATATAGGAGACCATTACACCGTAACATCGGTGTCAGAAACAGTTATTGAACTGGATGTATCATCGAGGCTATTGTCTTGGTCGAGCGCAAGCGGCAACCCTATCAGGGGGAGCGACGGTGAAAACAGTATCAGACCAACGGACACGCTAGATAAAACATTAACGGACTGGGTGTCTATAAATAGGAGTACCGTAGAGCGTATAGTGGTTAATATCGCCGCGCCAAATGGTATGTATAAAGATAATGGCAGCAAATTAACGATGTCTGCAACCGCCGAGGTGCAATATCAGGCCCTGGATGAGAGTGGAGCGCCGTTCGGGCCCATATACACCGCCACGGGAACAATAACAGGTCGTAGCTCAGATTATAATGGAGTTACGATATATGGCTATCTACCGACCGCGTCCCGTGTCCGGGTTAGAGCGCGTCGCACATCAGACACCGATAGAGGTTTTAATGGCACCGTTTCGGACGAAATTGTATACGCTAACCTGTACGGTCAGTCTGTGGACACAACCCCACACTATGGTAATAGAACAACAGTACATTCGGCGCGAAAACAAACCCCCAGGGCGACGGAAGTTAGGCAACCACAGCTACGTATGATTGCCACCGAAATGGTATTCAAATACTTGGGGGGTGGAGTTTTTGATACGGTAATGACACCAAATAAACAAGCTGTTCAGTCTCTTATTCGGCTAGCTAGGGACCCGGTAGTTGGTGGTCTTGATTTATCTGTAGCTAATATGGATGCGCTTTTAGAGACTCAAGAAGAAGTCGAGTCGTATTTCGGTTCTTCTGACGCTGGTGAGTTTTGCTACACGTTCGATGATTATAAGACCACAATGCAGGAAATAGTTACCATTATTGCCGAGGCTATATTCTGCACTCCATATCGAAAAGGTGCGGATATACTTTTAGATTTTGAACGTCCGCGATTAGGGCCGGAGATGGTGTTTACCCACCGCAGTAAAGTAAAAACGTCTGAGAAATGGTCACGAACATTCAATGACCCCCAGGTTTTTGACAGCCTTAAATTCTCGTACATAGACCCCGTAACAAACGTTAAGGAGACAATATCTATCCCTGAAACAGGAGGTTTAAAGACCGAGACGTACGACTCTAAAGGGGTTCGCAATAAAAAACAAGCATACTGGCTGGCGCACAGACGGCATCAAAAAAATATCTTACGCAAAGTTAACGTATCATTCACCGCAACCGAAGAAGGTATTTTTGCACGACCAAACCGCCCGATATCTGTGGTTAAAGGCTCGCGCATGGCTACTTATGATGGCTATATAACTTCAGTAGACGGTTTAACGGTTCACTTGTCGTCGCCAGTACAGTTTACCGCAGGGGAACCACATTCGCTGGTACTGAAAACTCGCGATGGTGGCGCGCAAAGCATTCCGGTAATAGAAGGGCCTGACAATCGTTCTGTAATAATGCTTTCAGTACCGCAGGAAGCCATCTATACTGGTAACAGCGCGCTGAAGACAGAATTTTCCTTCGGCAGCGATGGCCGCCATGCGGCGCAAATGATTATGGTCAGCACCGTAGAACCGAGCGACGATAGAACCGTGCGCATCACTGGGTTCAATTACGATGCCGATTACTACAAATACGATGGCGTTTCGCCATTTGGCCGCGCGTTTAGCGACGGATTCAGCAACGGTTTTAGTTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)