Phage RBP Database

Genbank accession

QPX73301.1 [GenBank]

Protein name

central tail fiber J

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,81

TF

Evidence RBPdetect2

Probability 0,98

Seq2Symm

C3 confidence 0,845 truncated

C3	0,845
C1	0,029
C7-C9	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MIKNMITGSKGGSSKPHTPVEMEDNLISINRIRILLAVSDGEVDPDFSLKDLYFDDVPVMNHDGSLNFQNVKAEFRPGTQTQDYIQGFTDTASEITVARDLTAATPYIISVTNKNLSAIRIKILMPRGFTQEDNGDLTGVRVEYAVDMAIDGAEYNEVLHDVIEGKTMSGYDRSRRIDLPAFNERVLLRVRRLTDSTSARVTDLIKMQSYAEVVDAKFRYPLTGLVYVEFDSELFPNALPNISIKKKWKIINVPSNYDPISRTYSGSWDGTWKKAWSNNPAFVLYDLITNQRYGLDQRELGIALDKWSIYECAQYCDQMVPDGKGGTEPRYLCDVVIQSQVEAYQLVRDICSIFRGMSFWNGESLSIVIDKPRDASYIFTNDNVVNGDFSYTFASEKSMYTQCNVTFDDEQNMYQQDVEGVFETEAALRFGYNSTSITAIGCTRRSEANRRGRWILKTNVKSTTVNFATGLEGMIPTIGDVIVVSDNFWSSALTLNLSGRVMEVSGLQVFTPFKVDARAGDRILVNKPDGKPVGRTIARVSDDGKTLTLNTTFGFDVQPDTIFAIERTDIAQQRYVVTGITKGDGDEEFTYNITAVEYDPNKYDEIDYGVNIDDRPTSIVQPDILPAPQNVKIESYSRVVQGASVETMHVSWDKVEYASLYEMQWRKDNGNWNNTPRTANKETEVEGIYAGNYHVRVRSVAANGSASGWSAIVSAGLTGKVGEPEKPINLTASDNEVFGIRVKWGMPEGSGDTAYIELHQAPNGADGHPIVDEATLLTLIPFPQYEYWHSILPAGHVVWYKARAVDKIGNVSDWTDFVRGMASDDTSIITDHIKVDIENSDGYKWLQENAIKANDKIHSTAESVIENALANDKDVRRMRVENGKRKAEFLQSLKLIADETEARVTQVTQMSAQFDEKLTAQNSELREVIANSTETISQRIDQLTATFESEIDGVKQDIKAQITDVNQAITNEAEARASADRALSTQIGDTQSAVNQKLDSWVNADSVGAMYGVKLGLRYNGQEYSAGMALSLVGDGSGVKSQFLFDAGRFAIINNQQSGGFTLPFVVENNQVFINSLLVKNGSIGNAQIADQINSNNWSSGAAGWMINKNGYAEFNQITVRGTVYANAGSFTGNVYATDGWFRGAVYAEKIEGDVAKAVVLGFNGSVHIPAVNYNRHLVIPYVGIHGYTYSGGVWGGGTVWVDSTYGGRLANVQATAMHGGSSGYVLLPAGNATTLSYGGNLNHANAVPILTVLLFKA

Physico‐chemical properties

protein length:	1258 AA
molecular weight:	138813,56160 Da
isoelectric point:	4,96394
aromaticity:	0,09380
hydropathy:	-0,30405

Domain architecture

QPX73301.1

1 1258 aa

ATT 92–216 · ATT 339–490 · STR 625–719 · RBD 993–1130 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171 IPR015406

IPR055385
ATT

IPR055385 IPR032876 IPR036116

IPR013783
STR

IPR013783

IPR003961
STR

IPR003961

QPX73301.1

11258 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0014
STR

DC_0014

QPX73301.1

11258 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	3	875	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	92	216	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	339	490	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR036116	STR	IPR036116	625	714	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR013783	STR	IPR013783	626	719	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR003961	STR	DC_0003	626	715	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR015406	RBD	DC_0135	993	1130	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QPX73301.1

1 1258 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	500	500	0,8341
Central domain	501	1026	527	0,0918
C-terminal	1027	1258	231	0,4627

Note: Constraints were applied during segmentation.
Fixed 48 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Citrobacter phage vB_CfrD_Supreme284 [NCBI] · taxon 2777349

Uroviricota Caudoviricetes Drexlerviridae Tlsvirus Citrobacter phage vB_CfrD_Supreme284

Host

Citrobacter freundii [NCBI] · taxon 546

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii

Genbank protein accession

QPX73301.1 [NCBI]

Genbank nucleotide accession

MW021750.1 [NCBI]

CDS location

range 16296 -> 20072
strand +

CDS

ATGATCAAAAATATGATAACTGGCAGTAAGGGCGGTTCTTCAAAGCCTCATACACCTGTTGAAATGGAAGATAACCTAATTTCAATTAACAGGATCAGAATTCTTTTAGCTGTTTCTGATGGTGAAGTTGATCCAGACTTTTCATTGAAAGATTTATATTTTGATGACGTTCCGGTTATGAATCATGATGGTTCACTAAACTTTCAGAATGTTAAGGCAGAATTCAGACCAGGGACGCAAACGCAGGATTATATTCAGGGGTTTACTGATACAGCCAGCGAAATTACAGTTGCTCGCGATCTGACAGCCGCAACGCCTTATATTATTTCCGTGACTAATAAAAACCTTTCCGCGATCCGTATTAAAATTTTAATGCCGCGAGGGTTTACGCAGGAGGATAACGGAGATTTAACAGGCGTTCGCGTTGAATATGCAGTTGATATGGCTATTGATGGCGCTGAATATAACGAGGTTTTGCATGATGTGATCGAAGGTAAAACAATGAGCGGTTACGACAGAAGCCGCAGAATTGATTTACCTGCTTTCAATGAGCGTGTTTTATTGCGCGTTCGTCGCCTGACAGACAGCACGTCAGCGAGAGTTACCGATCTGATTAAAATGCAAAGCTATGCGGAAGTTGTAGACGCTAAATTTCGTTACCCATTGACTGGTTTAGTATATGTTGAGTTTGACAGCGAATTATTCCCTAATGCGTTGCCGAATATCAGCATTAAGAAAAAATGGAAAATCATTAATGTTCCGTCAAATTATGATCCTATTTCCCGCACTTATTCAGGGTCATGGGATGGAACATGGAAAAAGGCATGGAGTAATAACCCTGCTTTTGTTCTGTATGATTTGATTACCAATCAGCGTTACGGACTCGATCAAAGAGAATTAGGCATCGCGCTTGATAAATGGAGCATTTACGAATGTGCGCAGTATTGCGATCAGATGGTTCCAGACGGTAAAGGCGGAACAGAGCCGCGCTATCTTTGCGACGTTGTGATCCAGAGCCAGGTAGAAGCGTATCAGCTTGTGCGTGATATTTGTTCAATCTTCCGTGGAATGAGCTTTTGGAATGGTGAGAGCCTTTCAATCGTGATCGATAAGCCTCGCGATGCGTCATACATCTTTACTAATGACAACGTGGTTAACGGCGATTTCAGCTACACGTTTGCCAGCGAGAAAAGCATGTACACGCAATGCAACGTGACTTTCGACGACGAACAAAACATGTATCAACAGGACGTTGAGGGTGTTTTTGAAACAGAGGCAGCGTTACGTTTTGGATATAACAGTACGTCAATAACTGCCATTGGATGCACTCGACGCAGTGAGGCTAATCGCCGTGGTCGCTGGATTCTAAAAACCAACGTTAAGAGCACAACAGTTAACTTTGCTACTGGCCTGGAAGGTATGATCCCAACAATAGGTGATGTTATTGTTGTATCTGATAACTTCTGGTCAAGTGCTCTAACGCTGAATCTATCAGGTCGCGTGATGGAGGTTAGCGGGTTGCAGGTGTTCACGCCGTTTAAGGTTGACGCAAGAGCAGGTGATCGCATTCTGGTAAATAAGCCAGATGGTAAGCCAGTTGGTCGAACCATTGCGCGTGTAAGTGATGACGGCAAAACGCTAACGCTAAACACGACATTTGGCTTTGACGTTCAGCCGGATACCATTTTTGCAATTGAGCGAACAGATATTGCACAGCAACGATATGTTGTAACCGGAATCACTAAGGGTGACGGTGATGAAGAATTTACCTACAACATAACGGCTGTTGAATACGATCCTAACAAATACGATGAAATTGATTATGGCGTAAACATTGATGACCGTCCGACTTCAATCGTGCAGCCTGACATTTTGCCAGCACCGCAAAACGTCAAGATCGAATCTTATTCGCGAGTTGTTCAGGGTGCGAGCGTGGAAACAATGCACGTTTCATGGGATAAGGTTGAATATGCAAGCCTTTATGAAATGCAGTGGAGAAAAGACAATGGCAACTGGAACAACACGCCGCGCACAGCCAACAAGGAAACGGAAGTTGAAGGTATTTACGCAGGAAACTATCACGTAAGGGTTAGATCTGTTGCAGCTAATGGTTCAGCGTCTGGATGGTCAGCAATTGTTAGCGCCGGATTAACTGGCAAAGTTGGCGAGCCAGAAAAGCCGATTAACCTTACAGCGTCTGACAATGAGGTTTTCGGCATTCGCGTAAAATGGGGTATGCCGGAGGGTTCTGGTGATACAGCTTACATAGAGTTGCATCAAGCGCCGAACGGTGCTGATGGTCATCCTATTGTTGATGAAGCAACGCTATTAACGCTGATACCGTTCCCGCAATATGAGTATTGGCATTCAATACTGCCAGCGGGTCATGTTGTCTGGTACAAGGCAAGGGCAGTTGACAAAATCGGGAATGTGTCTGATTGGACTGACTTTGTGCGCGGCATGGCTTCCGACGATACGAGCATTATCACGGATCATATTAAGGTCGATATTGAAAATTCTGATGGATATAAGTGGTTACAGGAAAACGCAATAAAGGCCAATGATAAGATCCACAGCACAGCGGAATCAGTGATTGAAAACGCATTAGCGAATGATAAAGATGTGCGACGTATGCGAGTTGAAAACGGCAAGCGTAAAGCGGAGTTCTTGCAATCGCTGAAACTCATTGCAGACGAAACAGAAGCAAGGGTAACGCAGGTCACTCAAATGAGTGCGCAATTTGACGAGAAATTAACGGCTCAAAATAGCGAATTGAGAGAGGTAATTGCTAACAGCACTGAAACCATTAGCCAAAGGATTGATCAGCTTACAGCTACGTTTGAGAGCGAAATTGATGGTGTTAAGCAGGATATCAAAGCACAGATAACTGATGTTAACCAAGCAATCACCAATGAAGCGGAAGCGCGAGCGTCAGCGGATAGGGCGTTATCAACTCAAATTGGTGATACCCAATCAGCGGTTAACCAGAAACTTGATTCTTGGGTTAATGCCGATAGCGTAGGCGCGATGTACGGCGTTAAGTTGGGGTTACGTTACAACGGGCAGGAATATAGCGCGGGTATGGCTCTTTCCCTTGTTGGTGACGGATCAGGAGTTAAATCACAATTCCTGTTTGATGCTGGACGATTTGCGATCATAAACAACCAACAGAGCGGAGGTTTTACACTACCGTTTGTTGTTGAGAATAATCAGGTGTTTATCAACAGCTTACTTGTGAAAAATGGCTCTATTGGTAACGCTCAGATTGCGGATCAGATTAACTCTAACAACTGGAGCAGCGGCGCGGCTGGATGGATGATTAATAAGAATGGTTATGCTGAATTTAACCAGATAACGGTAAGGGGTACAGTGTACGCAAACGCCGGATCATTCACTGGTAACGTTTACGCTACTGATGGTTGGTTTAGGGGTGCTGTTTACGCTGAAAAAATCGAGGGCGACGTTGCAAAGGCTGTTGTGCTTGGGTTTAACGGATCGGTTCACATTCCGGCAGTAAACTACAACAGACACCTTGTGATCCCTTATGTTGGTATTCACGGGTACACATATTCAGGTGGTGTATGGGGCGGCGGTACTGTTTGGGTTGATTCAACATATGGCGGTCGCCTTGCTAACGTTCAGGCAACTGCAATGCATGGCGGATCAAGTGGTTATGTTCTGTTGCCAGCAGGTAACGCAACTACGCTTTCATATGGTGGAAATCTAAACCACGCAAACGCAGTACCGATCTTAACAGTTCTGCTATTCAAAGCATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)