Protein

View in Explore
Genbank accession
WKM80518.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSRNVEEIFGAVVTAPHQIPYTYTATGGETFISLPFYPVTGFITINGGVQVPVDNYEIDGNTVNLGRALEADDVVYCLFDKILSPEDYENGIRIYKFQAVGNETSFTPDFTTYGVQTLYIDGKFQVPGVDYNYNSATGVVSFLNGSPTAGVWVVAEMSIKQNYLALSSDSGASLVGTSSGNTVQEVLNSHSGSFQTGVKLLSSNDLIVDKSVTPNQLYRWDGAFPKSVPPGSTPASTGGVGSGAWLSVGDATLRSDLKSSQDNLGDELVTVKQPGTGTVSRTVHDKMAERYTFEDFGAKGDWFTDDTDALNAAALFSQTTGNTIYGCAQKGYRFTSGIQLVNQTTNVSAKFEGAGRERCFLLPVGSMDAAIKIWGTGWGASGQGAVFGAVFKGFEIRANGLTGNALDIRRAGLWCDFSDLRITDPNGIGLYHEAIFDHSYRDIEVRSATGLGIKTYEPKPTDAQGFQENSFLEFHNVNVLSSNGKTTQWEIDGGDAFSFYKCKPSEGTLGIDIKGIAKGFTFYQTYCDGQTDNATIENIGIKVASGCHEINVYGGRFWNTKYAIDQGAGGCSIKGVNIAYDSPAGATVYHFLARNSIDRPLDFDPYMSIFNEGGVPNFYTYRAVDANQHSYTPTLSNVNIGSGFTFGAYNKFGNKTRVFVHTELGAGSSITGAIAITAPHISSVTSFVSGTLFDASDNKSYPIQGYIKSGEQGMTLTHSGGLVTDTLPFPLSAGDMIHLDGEYWS
Physico‐chemical
properties
protein length:745 AA
molecular weight: 80028,78550 Da
isoelectric point:4,87971
aromaticity:0,11678
hydropathy:-0,18966

Domains

Domains [InterPro]
DC_0063
STR
1–731
DC_0063
IPR040775
RBD
185–250
IPR040775 IPR011050
G3DSA:2.10.10.80
ATT
190–248
G3DSA:2.10.10.80 IPR012334
WKM80518.1
1 745
Architecture
STR
ATT
STR
STR 1-189 | ATT 190-248 | STR 249-731 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WKM80518.1
1 745
Domain Start End Length (AA) Confidence
N-terminal 1 306 306 0,9946
Central domain 307 613 308 0,9910
C-terminal 614 745 131 0,9872
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-306
Central
307-613
C-terminal
614-745

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SW16-7
[NCBI] 		3062021 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Weltevreden
[NCBI] 		57743 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WKM80518.1 [NCBI]
Genbank nucleotide accession
OR228402.1 [NCBI]
CDS location
range 136161 -> 138398
strand -
CDS
ATGTCTAGAAATGTCGAAGAAATCTTTGGAGCGGTTGTAACAGCACCACACCAGATTCCATACACTTATACCGCAACTGGCGGAGAGACGTTTATCTCCCTCCCGTTCTACCCTGTTACAGGCTTCATCACCATCAATGGTGGAGTTCAAGTTCCTGTTGACAACTATGAAATCGATGGTAACACAGTCAACCTCGGTCGAGCGCTAGAGGCTGATGATGTAGTGTACTGTCTGTTTGACAAGATCCTGTCCCCAGAAGATTATGAAAACGGGATTCGAATCTACAAGTTTCAGGCTGTAGGTAACGAAACTTCCTTCACACCCGACTTCACCACATATGGCGTGCAGACCCTGTATATCGATGGTAAGTTCCAGGTTCCTGGGGTTGACTACAATTACAACAGCGCGACTGGTGTGGTGTCATTCCTGAATGGATCTCCGACTGCTGGTGTTTGGGTTGTGGCTGAGATGTCCATTAAACAGAATTACCTGGCGCTCTCTTCCGATAGTGGAGCCAGCTTGGTGGGGACTTCTTCAGGTAACACCGTTCAAGAAGTTCTTAATTCACATTCTGGCTCTTTCCAGACTGGGGTAAAACTCCTTAGTTCTAATGACTTAATCGTGGATAAGTCTGTTACTCCGAACCAACTTTATCGTTGGGATGGGGCGTTTCCTAAATCAGTACCACCAGGGTCAACACCTGCTTCAACAGGTGGTGTAGGCTCAGGTGCATGGTTGAGTGTTGGTGATGCAACTCTTAGAAGTGATCTTAAAAGTTCTCAAGATAATCTTGGAGATGAACTGGTAACTGTAAAACAACCAGGCACTGGAACTGTATCCAGAACGGTTCACGATAAGATGGCTGAACGATACACATTCGAGGATTTTGGCGCGAAAGGTGACTGGTTTACTGATGATACAGATGCGTTAAATGCTGCCGCGCTGTTCTCGCAGACAACAGGCAATACTATTTACGGTTGCGCCCAAAAGGGATACAGATTCACTTCTGGCATTCAATTAGTAAATCAAACAACCAACGTCTCGGCAAAATTCGAGGGTGCTGGACGTGAGCGTTGTTTCCTGTTGCCAGTGGGATCAATGGATGCCGCAATAAAAATTTGGGGGACTGGATGGGGTGCTTCTGGACAGGGTGCGGTGTTCGGGGCGGTGTTTAAAGGTTTCGAAATACGAGCTAATGGACTCACCGGGAACGCTCTGGATATCAGACGTGCAGGTTTGTGGTGTGATTTTTCAGATCTAAGGATAACAGACCCTAATGGAATAGGGTTGTACCACGAAGCCATCTTTGATCACAGTTACCGTGATATAGAAGTGCGTTCGGCAACTGGTTTGGGGATTAAAACCTATGAGCCTAAACCTACTGATGCACAGGGGTTTCAGGAGAATAGTTTCCTAGAGTTTCATAACGTCAACGTACTATCATCAAACGGAAAAACAACGCAATGGGAAATTGATGGTGGTGATGCGTTCAGTTTTTATAAATGCAAACCATCTGAAGGTACATTAGGAATCGATATAAAAGGAATTGCCAAGGGTTTTACTTTCTACCAGACATACTGTGATGGACAAACAGATAACGCCACTATAGAAAATATTGGTATTAAAGTTGCATCTGGGTGCCATGAGATTAACGTATATGGCGGTCGTTTCTGGAATACTAAATATGCTATAGACCAGGGCGCTGGCGGTTGTTCAATTAAAGGTGTAAACATCGCATATGATTCCCCGGCTGGTGCAACTGTTTACCATTTTCTCGCGAGAAATAGCATTGACCGCCCTCTTGATTTCGACCCATACATGAGTATCTTTAATGAAGGTGGCGTGCCAAACTTTTACACTTACCGCGCTGTTGACGCCAATCAACACAGTTACACTCCTACATTATCTAATGTTAACATAGGATCGGGTTTTACATTCGGCGCATACAATAAGTTCGGAAACAAAACAAGGGTTTTTGTTCACACTGAGTTGGGTGCTGGAAGTTCTATTACAGGAGCCATAGCTATTACGGCTCCACATATCTCGTCAGTAACATCCTTTGTTAGTGGTACTCTTTTTGATGCGTCTGACAATAAATCATATCCTATTCAGGGCTACATAAAATCAGGAGAGCAGGGCATGACGCTAACTCACTCAGGGGGGCTGGTAACAGATACACTACCTTTCCCACTGTCCGCTGGTGATATGATTCACCTTGACGGTGAATACTGGAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
088992796cccbbab57ef8d1adc2dc20ca80b5dae8e3960360678ab2557dac30c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7872
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
SW16-7, a novel Ackermannviridae bacteriophage with highly effective lytic activity targets Salmonella enterica serovar Weltevreden Xu,J., Li,J., Yan,Y. and Li,X. — — GenBank