Phage RBP Database

Genbank accession

XUK81938.1 [GenBank]

Protein name

tail fiber protein

RBP type

TSP

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,58

TF

Evidence RBPdetect2

Probability 0,54

Protein sequence

MAVAYPTIPIPDLEDAETVLSDDFLVVNQTDGTRKAKIDDVVNDLSITKIVYFTEGGYLKSKKDFAYDPETKRYYTWNGDYPKIILPDSTVEGAGGVSAKAWSVFGELAATSSGRIVDYGSIGGQLDMDLEVADTFKVRLTSNTTISFENQTEGLEGVARTITVCITQTSGGNKVYWPDNVKWAYGRDPILTFTAGATDIFKLETYDNGLTWYGALIIAGAI

Physico‐chemical properties

protein length:	222 AA
molecular weight:	24232,85470 Da
isoelectric point:	4,40686
aromaticity:	0,11261
hydropathy:	-0,13468

Domain architecture

XUK81938.1

1 222 aa

ATT 47–104 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.10.10.80
ATT

G3DSA:2.10.10.80

IPR040775
RBD

IPR040775

XUK81938.1

1222 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1864
STR

DC_1864

XUK81938.1

1222 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	47	104	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR040775	RBD	DC_0821	51	104	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XUK81938.1

1 222 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	206	206	0,7805
Central domain	207	211	6	0,0043
C-terminal	212	222	10	0,9807

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Escherichia phage NHEP1 [NCBI] · taxon 3420447

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Escherichia coli [NCBI] · taxon 562

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

XUK81938.1 [NCBI]

Genbank nucleotide accession

PQ511146.1 [NCBI]

CDS location

range 127678 -> 128346
strand -

CDS

ATGGCTGTAGCTTATCCTACAATACCAATCCCAGATCTTGAAGATGCAGAAACAGTCTTGAGTGATGACTTCTTGGTTGTCAACCAGACTGACGGGACAAGAAAGGCTAAGATTGATGATGTTGTCAATGATCTTAGCATTACTAAAATAGTTTATTTCACAGAGGGCGGTTATCTTAAGAGCAAGAAGGACTTTGCTTATGACCCAGAGACCAAGCGATACTACACGTGGAACGGGGATTACCCTAAAATAATCCTCCCAGACTCTACTGTAGAGGGTGCTGGGGGTGTGTCTGCAAAAGCCTGGTCTGTTTTTGGGGAGCTTGCTGCAACTTCTTCTGGCAGAATAGTTGATTACGGATCTATTGGTGGTCAGCTTGATATGGATCTTGAAGTTGCGGACACTTTTAAAGTTCGACTAACTTCAAATACCACAATCTCTTTTGAAAATCAGACAGAAGGTCTTGAAGGGGTAGCGAGAACTATAACCGTATGCATTACTCAGACCTCTGGCGGTAACAAAGTCTATTGGCCTGATAATGTTAAATGGGCATACGGAAGAGATCCTATCCTAACATTTACAGCTGGTGCAACAGATATTTTCAAGTTAGAAACCTACGACAACGGGCTAACTTGGTACGGGGCACTGATTATAGCAGGAGCTATCTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)