Protein

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Genbank accession
YP_010582525.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,78
Protein sequence
MALVIHYTRNSDGTFNTQRYRDTPMNFVVNNIPDGVPVRVFIDEIGEDNDVTENFEALKENAIFHVVESAGGGAIKGAMKIFSVILKPLAKLLSPSVKGASSNLANSQAESPNNSLSDRNNKARPYERSYDICGTVQTIPNNLMSTYKVFNAAGRIIEYGYYDAGRGYLDIHPDGITDGDTRVSDITGTSVAVYSPYTSPNNTATPQVLVGDPIEQGLYLTVESNEVDGAVLKAPNGLGISFSYQSGYPSLSGSTGTIYDPSGGSDFSGVLEPNDTFTLVAAWTNTDVDLSGGGYQVISVSEGTVTFVVPSSLIGRWQQIVPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERVVANIAAANGMYKDNGKSKTLASVTAEIQYQLLDENSAPYGPIYTAQGTVSGRTPDYNGVTIYADLPVASRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMSPNTQAVQSLIRLARDPDVGGLDLTVKNMDKLLAVQKEIEDYFGDTQAGEFCYTFDDYKTTMQDIVSTIADAIFCTPYRKGADILLDFERPRIGPEMVFTHRSKTSEKWTRTFNDAQVFDSLKFSYIDPKTNTKEVITIPETGGLKTETYDSKGIRNYKQAFWAANRRHQKNTLKKISVSFSATEEGIFAIPNRAISVVKGSRMSTYDGYITAVNGLTVELSQPVKFTSGDDHSLVLKRRDGGVQSVKVTPGVHDRQVIMAEVPQEAIYTGNSALKTEFSFGNEARHNAQMILVYTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSDGFNSGFN
Physico‐chemical
properties
protein length:850 AA
molecular weight: 93596,26670 Da
isoelectric point:5,19175
aromaticity:0,09882
hydropathy:-0,38976

Domains

Domains [InterPro]
DC_0118
STR
1–684
DC_0118 DC_0808
NF040662
Unmapped
353–830
NF040662
YP_010582525.1
1 850
Architecture
STR
RBD
STR 1-684 | RBD 701-844 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010582525.1
1 850
Domain Start End Length (AA) Confidence
N-terminal 1 226 226 0,9866
Central domain 227 425 200 0,6124
C-terminal 426 850 424 0,1578
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-226
Central
227-425
C-terminal
426-850

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Shemara
[NCBI] 		2596714 Uroviricota > Caudoviricetes > Sarkviridae > Cornellvirus > Cornellvirus shemara
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010582525.1 [NCBI]
Genbank nucleotide accession
NC_069152.1 [NCBI]
CDS location
range 19494 -> 22046
strand +
CDS
TTGGCGCTAGTAATCCACTATACCCGCAATAGCGACGGCACTTTTAACACTCAAAGATATCGGGATACCCCGATGAACTTCGTTGTCAATAATATACCGGATGGTGTGCCGGTGCGCGTCTTTATTGATGAGATAGGTGAAGATAACGATGTTACTGAGAATTTCGAAGCATTGAAAGAAAATGCAATCTTTCATGTTGTCGAGTCCGCAGGCGGCGGGGCAATTAAAGGTGCCATGAAGATTTTCAGTGTTATTTTAAAACCACTGGCAAAGCTTCTCTCTCCTTCAGTAAAAGGCGCGTCGTCCAATCTCGCCAACTCGCAAGCAGAATCACCCAACAATAGTCTTTCTGACCGTAATAATAAAGCGCGCCCCTATGAGCGGAGTTATGACATTTGCGGAACTGTGCAAACTATACCCAATAACCTCATGTCAACTTATAAGGTGTTTAACGCCGCGGGGCGTATTATAGAGTACGGATACTACGATGCAGGTAGAGGTTATCTTGACATACACCCTGACGGTATAACAGACGGTGACACTCGTGTGTCAGATATTACCGGAACATCAGTTGCCGTCTATTCTCCGTACACGTCGCCAAATAACACGGCAACACCACAAGTACTGGTCGGGGACCCAATAGAGCAGGGGTTATACCTGACAGTCGAATCTAACGAAGTTGACGGAGCTGTTCTGAAAGCGCCAAACGGGCTAGGTATATCTTTTTCTTACCAGTCTGGATACCCTTCGTTATCCGGTTCCACCGGCACGATATACGACCCGTCAGGAGGGTCTGACTTTTCCGGTGTTCTAGAACCAAATGACACCTTTACTCTTGTAGCCGCATGGACCAATACGGATGTAGACCTGTCAGGCGGAGGCTATCAGGTAATTAGTGTTTCCGAAGGAACTGTCACTTTTGTGGTCCCCAGCAGTCTTATAGGCAGGTGGCAGCAAATCGTACCTGGTTCTTTTTTTCGCGGAGACGGCGAGGCATCTTTACAGCCGGATAACACTTACGAAAAAACGTTAACGGATTGGGTATCTATAAACCGTACTGAGGTGGAACGTGTTGTCGCTAACATAGCCGCGGCAAACGGGATGTACAAAGATAACGGCAAGTCTAAAACATTGGCTTCTGTTACGGCAGAAATACAATACCAACTTCTTGACGAAAATAGTGCGCCTTACGGACCGATTTATACCGCACAAGGAACAGTTTCCGGGCGTACGCCTGATTATAACGGCGTGACTATATACGCAGATTTGCCAGTAGCATCTCGTGTTCGCGTCCGGGCCAGAAGAGTAACAGACCTCGATTTTAATTTCGAAGGGTCAGTGGTAGACGAGATAACTTACGTAAATCTATATGGCCAGACCCGCGATAACACCCCGCACTACGGCAACAGAACTACGGTGCACTCAATGCGTAAGCAGACGCCGCGCGCTGCCGAAGTTAAGCAACCTCAGTTGCGCATGATTGCTACCGAGATGGTGTATAAATATCTCGGTAACGGAGTGTTTGAAGATACGATGTCGCCTAATACCCAGGCAGTGCAGTCGTTGATTCGCCTCGCCAGGGACCCGGACGTCGGGGGGCTTGATTTAACCGTAAAGAATATGGATAAGTTGCTTGCTGTTCAAAAGGAAATAGAAGATTACTTCGGCGACACGCAAGCCGGAGAATTCTGTTACACATTCGACGACTATAAAACAACGATGCAAGATATCGTCAGCACTATCGCCGACGCTATTTTCTGCACGCCTTACCGTAAAGGTGCTGACATCCTGCTTGATTTTGAGAGGCCTCGTATCGGGCCGGAAATGGTATTTACGCATCGCAGCAAGACCTCCGAAAAATGGACCCGAACTTTCAATGATGCGCAGGTTTTTGACAGTTTAAAATTCTCTTACATAGACCCGAAAACTAACACTAAAGAGGTAATAACAATTCCTGAAACAGGTGGTTTGAAGACTGAAACATACGATTCTAAGGGTATTCGTAACTACAAACAGGCTTTCTGGGCCGCAAACAGACGGCACCAGAAAAACACTCTTAAAAAGATTTCTGTATCGTTTAGCGCCACAGAAGAAGGGATATTTGCGATACCAAACAGGGCTATTAGCGTAGTGAAAGGTTCCCGGATGTCTACGTATGACGGTTACATAACGGCGGTAAATGGCCTTACGGTGGAGCTGTCACAGCCTGTTAAATTTACATCAGGAGACGACCACTCTCTTGTTCTTAAACGACGAGACGGTGGCGTTCAAAGTGTTAAAGTCACACCCGGGGTGCACGACAGGCAGGTGATTATGGCGGAAGTCCCGCAAGAGGCGATATACACCGGCAACAGCGCTTTAAAAACTGAGTTTTCATTTGGTAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTATACGGTAGACCCTGGCGACGACCGAACAGTTAAAATAACGGGGTTTAACTATGATAAGGACTTCTACAAATTTGATAATGTGCCTCCTTTTGGTCGTGCATTTTCAGACGGTTTCAATAGCGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
adfb667d0cf024457819338aafa522ac28f0bf60d185227f6c795e5e542c53de
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7951
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Salmonella enterica Siphophage Shemara Chung,M., Xie,Y., Newkirk,H., Liu,M., Gill,J.J. and Ramsey,J. 2020 32029558 GenBank