Protein

View in Explore
Genbank accession
YP_010582525.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MALVIHYTRNSDGTFNTQRYRDTPMNFVVNNIPDGVPVRVFIDEIGEDNDVTENFEALKENAIFHVVESAGGGAIKGAMKIFSVILKPLAKLLSPSVKGASSNLANSQAESPNNSLSDRNNKARPYERSYDICGTVQTIPNNLMSTYKVFNAAGRIIEYGYYDAGRGYLDIHPDGITDGDTRVSDITGTSVAVYSPYTSPNNTATPQVLVGDPIEQGLYLTVESNEVDGAVLKAPNGLGISFSYQSGYPSLSGSTGTIYDPSGGSDFSGVLEPNDTFTLVAAWTNTDVDLSGGGYQVISVSEGTVTFVVPSSLIGRWQQIVPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERVVANIAAANGMYKDNGKSKTLASVTAEIQYQLLDENSAPYGPIYTAQGTVSGRTPDYNGVTIYADLPVASRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMSPNTQAVQSLIRLARDPDVGGLDLTVKNMDKLLAVQKEIEDYFGDTQAGEFCYTFDDYKTTMQDIVSTIADAIFCTPYRKGADILLDFERPRIGPEMVFTHRSKTSEKWTRTFNDAQVFDSLKFSYIDPKTNTKEVITIPETGGLKTETYDSKGIRNYKQAFWAANRRHQKNTLKKISVSFSATEEGIFAIPNRAISVVKGSRMSTYDGYITAVNGLTVELSQPVKFTSGDDHSLVLKRRDGGVQSVKVTPGVHDRQVIMAEVPQEAIYTGNSALKTEFSFGNEARHNAQMILVYTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSDGFNSGFN
Physico‐chemical
properties
protein length:850 AA
molecular weight: 93596,26670 Da
isoelectric point:5,19175
aromaticity:0,09882
hydropathy:-0,38976

Domains

View on InterPro
Domain architecture
YP_010582525.1
1 850 aa
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_010582525.1
1 850 aa
Domain Start End Length (AA) Confidence
N-terminal 1 226 226 0,9866
Central domain 227 425 200 0,6124
C-terminal 426 850 424 0,1578
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Salmonella phage Shemara [NCBI] · taxon 2596714
Uroviricota Caudoviricetes Sarkviridae Cornellvirus Cornellvirus shemara
Host
Salmonella enterica [NCBI] · taxon 28901
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Coding sequence (CDS)

Genbank protein accession
YP_010582525.1 [NCBI]
Genbank nucleotide accession
NC_069152.1 [NCBI]
CDS location
range 19494 -> 22046
strand +
CDS
TTGGCGCTAGTAATCCACTATACCCGCAATAGCGACGGCACTTTTAACACTCAAAGATATCGGGATACCCCGATGAACTTCGTTGTCAATAATATACCGGATGGTGTGCCGGTGCGCGTCTTTATTGATGAGATAGGTGAAGATAACGATGTTACTGAGAATTTCGAAGCATTGAAAGAAAATGCAATCTTTCATGTTGTCGAGTCCGCAGGCGGCGGGGCAATTAAAGGTGCCATGAAGATTTTCAGTGTTATTTTAAAACCACTGGCAAAGCTTCTCTCTCCTTCAGTAAAAGGCGCGTCGTCCAATCTCGCCAACTCGCAAGCAGAATCACCCAACAATAGTCTTTCTGACCGTAATAATAAAGCGCGCCCCTATGAGCGGAGTTATGACATTTGCGGAACTGTGCAAACTATACCCAATAACCTCATGTCAACTTATAAGGTGTTTAACGCCGCGGGGCGTATTATAGAGTACGGATACTACGATGCAGGTAGAGGTTATCTTGACATACACCCTGACGGTATAACAGACGGTGACACTCGTGTGTCAGATATTACCGGAACATCAGTTGCCGTCTATTCTCCGTACACGTCGCCAAATAACACGGCAACACCACAAGTACTGGTCGGGGACCCAATAGAGCAGGGGTTATACCTGACAGTCGAATCTAACGAAGTTGACGGAGCTGTTCTGAAAGCGCCAAACGGGCTAGGTATATCTTTTTCTTACCAGTCTGGATACCCTTCGTTATCCGGTTCCACCGGCACGATATACGACCCGTCAGGAGGGTCTGACTTTTCCGGTGTTCTAGAACCAAATGACACCTTTACTCTTGTAGCCGCATGGACCAATACGGATGTAGACCTGTCAGGCGGAGGCTATCAGGTAATTAGTGTTTCCGAAGGAACTGTCACTTTTGTGGTCCCCAGCAGTCTTATAGGCAGGTGGCAGCAAATCGTACCTGGTTCTTTTTTTCGCGGAGACGGCGAGGCATCTTTACAGCCGGATAACACTTACGAAAAAACGTTAACGGATTGGGTATCTATAAACCGTACTGAGGTGGAACGTGTTGTCGCTAACATAGCCGCGGCAAACGGGATGTACAAAGATAACGGCAAGTCTAAAACATTGGCTTCTGTTACGGCAGAAATACAATACCAACTTCTTGACGAAAATAGTGCGCCTTACGGACCGATTTATACCGCACAAGGAACAGTTTCCGGGCGTACGCCTGATTATAACGGCGTGACTATATACGCAGATTTGCCAGTAGCATCTCGTGTTCGCGTCCGGGCCAGAAGAGTAACAGACCTCGATTTTAATTTCGAAGGGTCAGTGGTAGACGAGATAACTTACGTAAATCTATATGGCCAGACCCGCGATAACACCCCGCACTACGGCAACAGAACTACGGTGCACTCAATGCGTAAGCAGACGCCGCGCGCTGCCGAAGTTAAGCAACCTCAGTTGCGCATGATTGCTACCGAGATGGTGTATAAATATCTCGGTAACGGAGTGTTTGAAGATACGATGTCGCCTAATACCCAGGCAGTGCAGTCGTTGATTCGCCTCGCCAGGGACCCGGACGTCGGGGGGCTTGATTTAACCGTAAAGAATATGGATAAGTTGCTTGCTGTTCAAAAGGAAATAGAAGATTACTTCGGCGACACGCAAGCCGGAGAATTCTGTTACACATTCGACGACTATAAAACAACGATGCAAGATATCGTCAGCACTATCGCCGACGCTATTTTCTGCACGCCTTACCGTAAAGGTGCTGACATCCTGCTTGATTTTGAGAGGCCTCGTATCGGGCCGGAAATGGTATTTACGCATCGCAGCAAGACCTCCGAAAAATGGACCCGAACTTTCAATGATGCGCAGGTTTTTGACAGTTTAAAATTCTCTTACATAGACCCGAAAACTAACACTAAAGAGGTAATAACAATTCCTGAAACAGGTGGTTTGAAGACTGAAACATACGATTCTAAGGGTATTCGTAACTACAAACAGGCTTTCTGGGCCGCAAACAGACGGCACCAGAAAAACACTCTTAAAAAGATTTCTGTATCGTTTAGCGCCACAGAAGAAGGGATATTTGCGATACCAAACAGGGCTATTAGCGTAGTGAAAGGTTCCCGGATGTCTACGTATGACGGTTACATAACGGCGGTAAATGGCCTTACGGTGGAGCTGTCACAGCCTGTTAAATTTACATCAGGAGACGACCACTCTCTTGTTCTTAAACGACGAGACGGTGGCGTTCAAAGTGTTAAAGTCACACCCGGGGTGCACGACAGGCAGGTGATTATGGCGGAAGTCCCGCAAGAGGCGATATACACCGGCAACAGCGCTTTAAAAACTGAGTTTTCATTTGGTAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTATACGGTAGACCCTGGCGACGACCGAACAGTTAAAATAACGGGGTTTAACTATGATAAGGACTTCTACAAATTTGATAATGTGCCTCCTTTTGGTCGTGCATTTTCAGACGGTTTCAATAGCGGTTTTAACTAA

Genome Context

Tertiary structure

YP_010582525.1
ESMFold structure
Source ESMFold
pLDDT 79.5
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Salmonella enterica Siphophage Shemara Chung,M., Xie,Y., Newkirk,H., Liu,M., Gill,J.J. and Ramsey,J. 2020 32029558 GenBank