Phage RBP Database

UniProt accession

A0AAE9BP15 [UniProt]

Protein name

Pectin lyase

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,99

Seq2Symm

C3 confidence 1,000

C3	1,000
D3	0,013
C1	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MALNFPISPSVGEEFAASNGVTYEWDGAKWDSITAFPSGGSSGGGSTGISEAPNDGQQYGRQNQSWTVIVPNSGGGSGEGASGYTNVRDLGAVGNGSTDDTTAINNALQLGGSVYFPAGTYLVTSTITVENKGLHMYGDGQASRIVFDPASEGDDFLRLLYNDGTPNPNQAYAISNLVIHAKTNKACGTGVKLHFTGGSTLVGVVNKLTFTNVDIGSEFASDADSGYFKKALHLLNSAGVVGTNLNIYTNSKTKVEYGVTDSVGIDIENSMAGHAMIRTLYLNNFYIQRYHTGIRAYSSAGTSYNSLESLYLSQGELLASKAMRMERISAVTVIGIHSDVRDYFLDSSNDYGDIHYASTIRICGSDIRANRVDSEDTTTQDYLIKIKGQQTMITGNSIFSFKNTEGVIQTGGSNSNQINTVITGNHFSGNGNSGFNVLNTAAGSREITFGGNTLEAFGGNTNPITNVVGSELLVYGQRSGNTV

Physico‐chemical properties

protein length:	483 AA
molecular weight:	51027,42770 Da
isoelectric point:	5,04698
aromaticity:	0,08903
hydropathy:	-0,25466

Domain architecture

A0AAE9BP15

1 483 aa

ATT 48–70 · STR 79–474 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:6.20.230.10
ATT

G3DSA:6.20.230.10 IPR012334

IPR011050
STR

IPR011050

IPR024535
ENZ

IPR024535

A0AAE9BP15

1483 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0582
STR

DC_0582

A0AAE9BP15

1483 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:6.20.230.10	ATT	G3DSA:6.20.230.10	48	70	Merged direct domain	G3DSA:6.20.230.10	N-terminal	Low	Positional only	46 proteins / 46 hits
IPR012334	STR	IPR012334	79	474	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	79	470	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR024535	ENZ	DC_0410	85	306	InterPro cluster	Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain	Central	High	Text match	420 proteins / 426 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

A0AAE9BP15

1 483 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	99	99	0,9707
Central domain	100	472	374	0,9893
C-terminal	473	483	10	0,4086

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Synechococcus T7-like virus S-TIP28 [NCBI] · taxon 1332140

Uroviricota Caudoviricetes Autographivirales Tiranvirus Tiranvirus STIP28

Host

Synechococcus sp. CC9605 [NCBI] · taxon 110662

Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. CC9605

No CDS data available.

	Description	Category	Evidence (source)
GO:0098015	virus tail	Cellular Component	IEA:UniProtKB-KW (UniProt)
GO:0016829	lyase activity	Molecular Function	IEA:UniProtKB-KW (UniProt)
GO:0098994	symbiont entry into host cell via disruption of host cell envelope	Biological Process	IEA:UniProtKB-KW (UniProt)
GO:0098996	symbiont entry into host cell via disruption of host cell glycocalyx	Biological Process	IEA:UniProtKB-KW (UniProt)

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Gene Ontology

Tertiary structure

Predicted Aligned Error (PAE)